primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score rps16-trnQ-UUG_p1 rps16-trnQ-UUG 1 AAGTCGCACGTTGCTTTCTA GAGGTTCGAATCCTTCCGTC 20 20 45.0 55.0 58.1 58.1 8.1 16.9 0.215425 5713 6992 1242-1353 1.000000 83.0 rps16-trnQ-UUG_p2 rps16-trnQ-UUG 2 TCATGTCCTTCAAGTCGCAC GAGGTTCGAATCCTTCCGTC 20 20 50.0 55.0 58.2 58.1 0.0 16.9 0.280333 5713 6992 1253-1364 1.000000 82.4 rps16-trnQ-UUG_p3 rps16-trnQ-UUG 3 AAGTCGCACGTTGCTTTCTA TTCGGAGGTTCGAATCCTTC 20 20 45.0 50.0 58.1 57.3 8.1 16.9 0.806797 5713 6992 1246-1357 1.000000 78.2 rps16-trnQ-UUG_p4 rps16-trnQ-UUG 4 AAGTCGCACGTTGCTTTCTA TAAGGCAACGGGTTTTGGTC 20 20 45.0 50.0 58.1 58.7 8.1 0.0 0.818817 5713 6992 1272-1383 1.000000 78.1 rps16-trnQ-UUG_p5 rps16-trnQ-UUG 5 ATCATGTCCTTCAAGTCGCA GAGGTTCGAATCCTTCCGTC 20 20 45.0 55.0 57.2 58.1 0.0 16.9 0.844354 5713 6992 1254-1365 1.000000 77.9 psbI-trnS-GCU_p1 psbI-trnS-GCU 1 CTTATCTAACGATCCGGGCC ATTGGGAGAGATGGCTGAGT 20 20 55.0 50.0 57.6 58.1 0.0 0.0 0.474855 8163 8277 250-254 1.000000 77.5 psbI-trnS-GCU_p2 psbI-trnS-GCU 2 CTTATCTAACGATCCGGGCC GGGTTCGAATCCCTCTCTCT 20 20 55.0 55.0 57.6 58.2 0.0 17.2 0.582336 8163 8277 181-185 1.000000 77.1 psbI-trnS-GCU_p3 psbI-trnS-GCU 3 CTTATCTAACGATCCGGGCC GTGGACTAAAGCGGCAGATT 20 20 55.0 50.0 57.6 58.3 0.0 1.4 0.626341 8163 8277 232-236 1.000000 76.4 psbI-trnS-GCU_p4 psbI-trnS-GCU 4 CTTATCTAACGATCCGGGCC TGGACTAAAGCGGCAGATTG 20 20 55.0 50.0 57.6 58.3 0.0 1.4 0.627569 8163 8277 231-235 1.000000 76.3 psbI-trnS-GCU_p5 psbI-trnS-GCU 5 CTTATCTAACGATCCGGGCC TTCGAATCCCTCTCTCTCCG 20 20 55.0 55.0 57.6 58.3 0.0 0.0 0.683870 8163 8277 178-182 1.000000 76.3 trnS-GCU-trnG-UCC_p1 trnS-GCU-trnG-UCC 1 GATCAGAGGGAACGGAGAGA ACGAATCGCACTTTTACCACT 20 21 55.0 42.9 57.9 58.2 0.0 1.2 1.297305 8366 9697 531-1466 1.000000 74.8 trnS-GCU-trnG-UCC_p2 trnS-GCU-trnG-UCC 2 AAGTGATCAGAGGGAACGGA ACGAATCGCACTTTTACCACT 20 21 50.0 42.9 58.1 58.2 0.0 1.2 1.298670 8366 9697 535-1470 1.000000 74.8 trnS-GCU-trnG-UCC_p3 trnS-GCU-trnG-UCC 3 ATCAGAGGGAACGGAGAGAG ACGAATCGCACTTTTACCACT 20 21 55.0 42.9 57.9 58.2 0.0 1.2 1.303153 8366 9697 530-1465 1.000000 74.7 trnS-GCU-trnG-UCC_p4 trnS-GCU-trnG-UCC 4 GATCAGAGGGAACGGAGAGA ACGAATCGCACTTTTACCAC 20 20 55.0 45.0 57.9 56.8 0.0 1.2 1.304330 8366 9697 530-1466 1.000000 74.7 trnS-GCU-trnG-UCC_p5 trnS-GCU-trnG-UCC 5 AAGTGATCAGAGGGAACGGA ACGAATCGCACTTTTACCAC 20 20 50.0 45.0 58.1 56.8 0.0 1.2 1.305695 8366 9697 534-1470 1.000000 74.7 atpF-atpH_p1 atpF-atpH 1 ATTAAACCCGAAACTCCCGG ATTTATGGACTGGTCGTGGC 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.156700 13736 14234 621-622 1.000000 79.3 atpF-atpH_p2 atpF-atpH 2 CAGTGGCCTAAGGAAACGAA ATTTATGGACTGGTCGTGGC 20 20 50.0 50.0 57.8 58.0 3.3 0.0 0.217299 13736 14234 593-594 1.000000 78.8 atpF-atpH_p3 atpF-atpH 3 ATTAAACCCGAAACTCCCGG TCGTGGCATTAGCGCTTTTA 20 20 50.0 45.0 57.9 58.3 0.0 18.7 0.390245 13736 14234 608-609 1.000000 77.4 atpF-atpH_p4 atpF-atpH 4 CAGTGGCCTAAGGAAACGAA TCGTGGCATTAGCGCTTTTA 20 20 50.0 45.0 57.8 58.3 3.3 18.7 0.450844 13736 14234 580-581 1.000000 76.9 atpF-atpH_p5 atpF-atpH 5 ATTAAACCCGAAACTCCCGG CGTGGCATTAGCGCTTTTAT 20 20 50.0 45.0 57.9 57.2 0.0 18.7 0.874150 13736 14234 607-608 1.000000 73.5 rpoC1_p1 rpoC1 1 GGCACCGGTATCGTCTAATC TTGCTCGTTCGAGAACTACG 20 20 55.0 50.0 57.9 58.0 6.9 23.5 0.101993 21184 23971 1848-2939 1.000000 79.7 rpoC1_p2 rpoC1 2 GCACCGGTATCGTCTAATCG TTGCTCGTTCGAGAACTACG 20 20 55.0 50.0 58.3 58.0 6.9 23.5 0.357271 21184 23971 1847-2938 1.000000 77.7 rpoC1_p3 rpoC1 3 GGCACCGGTATCGTCTAATC GCTCGTTCGAGAACTACGAT 20 20 55.0 50.0 57.9 57.5 6.9 23.5 0.517035 21184 23971 1847-2937 1.000000 76.4 rpoC1_p4 rpoC1 4 TTGGATAGACCCGTCTTCCC TTGCTCGTTCGAGAACTACG 20 20 55.0 50.0 58.5 58.0 16.6 23.5 0.547489 21184 23971 1871-2962 1.000000 76.1 rpoC1_p5 rpoC1 5 GCACCGGTATCGTCTAATCG GCTCGTTCGAGAACTACGAT 20 20 55.0 50.0 58.3 57.5 6.9 23.5 0.772312 21184 23971 1846-2936 1.000000 74.4 rpoB-trnC-GCA_p1 rpoB-trnC-GCA 1 CGCCAAGCCCTGATTAATGA TAAAGGATTTGCAGTCCCCC 20 20 50.0 50.0 58.3 57.5 0.0 14.6 0.845966 27220 28473 1385-1394 1.000000 75.1 rpoB-trnC-GCA_p2 rpoB-trnC-GCA 2 TCCCTCATTTCCATTCCGGA TAAAGGATTTGCAGTCCCCC 20 20 50.0 50.0 58.4 57.5 0.0 14.6 0.934514 27220 28473 1313-1322 1.000000 74.5 rpoB-trnC-GCA_p3 rpoB-trnC-GCA 3 TTCCCTCATTTCCATTCCGG TAAAGGATTTGCAGTCCCCC 20 20 50.0 50.0 57.6 57.5 0.0 14.6 0.960477 27220 28473 1314-1323 1.000000 74.3 rpoB-trnC-GCA_p4 rpoB-trnC-GCA 4 CGCCAAGCCCTGATTAATGA TTTGTTGATCAGGCGACACC 20 20 50.0 50.0 58.3 58.8 0.0 0.0 1.086040 27220 28473 1422-1431 1.000000 73.1 rpoB-trnC-GCA_p5 rpoB-trnC-GCA 5 CGCCAAGCCCTGATTAATGA GACACCCGGATTTGAACTGG 20 20 50.0 55.0 58.3 58.8 0.0 0.7 1.155591 27220 28473 1408-1417 1.000000 72.6 trnC-GCA-petN_p1 trnC-GCA-petN 1 GGGGGACTGCAAATCCTTTA TTAAAGCAGCCCAAGCAAGA 20 20 50.0 45.0 57.5 58.0 14.7 0.0 0.531149 28545 29426 963-966 1.000000 77.1 trnC-GCA-petN_p2 trnC-GCA-petN 2 GGGGGACTGCAAATCCTTTA AGCAATTAGTAGTGCCCAGC 20 20 50.0 50.0 57.5 58.0 14.7 4.7 0.569228 28545 29426 1040-1043 1.000000 76.7 trnC-GCA-petN_p3 trnC-GCA-petN 3 GGGGGACTGCAAATCCTTTA AGTCCACTCCTTCCCCATAC 20 20 50.0 55.0 57.5 58.1 14.7 0.0 0.644164 28545 29426 1015-1018 1.000000 76.1 trnC-GCA-petN_p4 trnC-GCA-petN 4 GGGGGACTGCAAATCCTTTA GTCCACTCCTTCCCCATACT 20 20 50.0 55.0 57.5 58.1 14.7 0.0 0.644164 28545 29426 1014-1017 1.000000 76.1 trnC-GCA-petN_p5 trnC-GCA-petN 5 GGGGGACTGCAAATCCTTTA GAGTCCACTCCTTCCCCATA 20 20 50.0 55.0 57.5 57.8 14.7 0.0 0.701352 28545 29426 1016-1019 1.000000 75.6 ndhC-trnV-UAC_p1 ndhC-trnV-UAC 1 GGTCCTTCACTAATCGGAGC AGAAGGTCTACGGTTCGAGT 20 20 55.0 50.0 57.8 57.8 0.0 0.0 0.423885 50967 52629 112-1809 1.000000 78.7 ndhC-trnV-UAC_p2 ndhC-trnV-UAC 2 GGTCCTTCACTAATCGGAGC AGCCCAATGCAACAAAATGC 20 20 55.0 45.0 57.8 58.5 0.0 0.0 0.700661 50967 52629 113-1891 1.000000 76.4 ndhC-trnV-UAC_p3 ndhC-trnV-UAC 3 GGTCCTTCACTAATCGGAGC GAAGGTCTACGGTTCGAGTC 20 20 55.0 55.0 57.8 57.5 0.0 0.0 0.767657 50967 52629 113-1808 1.000000 75.9 ndhC-trnV-UAC_p4 ndhC-trnV-UAC 4 GGTCCTTCACTAATCGGAGC GTTCGAGTCCGTATAGCCCT 20 20 55.0 55.0 57.8 58.7 0.0 0.0 0.909951 50967 52629 112-1797 1.000000 74.8 ndhC-trnV-UAC_p5 ndhC-trnV-UAC 5 GGTCCTTCACTAATCGGAGC GAAAGAGCCCAATGCAACAA 20 20 55.0 45.0 57.8 57.2 0.0 0.0 1.044732 50967 52629 113-1896 1.000000 73.6 psaI-ycf4_p1 psaI-ycf4 1 GCGATTGCAATGGCTTCTTT ACTTGCTTTTCGAGACCCTG 20 20 45.0 50.0 58.0 58.1 31.7 0.0 0.116194 60385 60732 113-462 1.000000 80.7 psaI-ycf4_p2 psaI-ycf4 2 GCGATTGCAATGGCTTCTTT CTTGCTTTTCGAGACCCTGT 20 20 45.0 50.0 58.0 58.1 31.7 0.0 0.116194 60385 60732 112-461 1.000000 80.7 psaI-ycf4_p3 psaI-ycf4 3 TTTTGTCCCTTTAGTGGGCC ACTTGCTTTTCGAGACCCTG 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.119702 60385 60732 114-493 1.000000 80.6 psaI-ycf4_p4 psaI-ycf4 4 TTTTGTCCCTTTAGTGGGCC CTTGCTTTTCGAGACCCTGT 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.119702 60385 60732 113-492 1.000000 80.6 psaI-ycf4_p5 psaI-ycf4 5 GTGGGCCTAGTATTTCCTGC CTTGCTTTTCGAGACCCTGT 20 20 55.0 50.0 58.0 58.1 4.5 0.0 0.147061 60385 60732 113-479 1.000000 80.4 petA-psbJ_p1 petA-psbJ 1 GGCATCCGTTATTTTGGCAC CCGGATTGGGTTCATCTCTG 20 20 50.0 55.0 58.1 58.0 0.0 0.0 0.119715 63941 64988 113-1156 1.000000 80.6 petA-psbJ_p2 petA-psbJ 2 GGCCTTTTGTTCTTCTTGGC CCGGATTGGGTTCATCTCTG 20 20 50.0 55.0 57.8 58.0 0.0 0.0 0.195812 63941 64988 113-1173 1.000000 79.9 petA-psbJ_p3 petA-psbJ 3 GGCATCCGTTATTTTGGCAC TCCGGATTGGGTTCATCTCT 20 20 50.0 50.0 58.1 58.1 0.0 0.0 0.199182 63941 64988 112-1157 1.000000 79.9 petA-psbJ_p4 petA-psbJ 4 GGCCTTTTGTTCTTCTTGGC TCCGGATTGGGTTCATCTCT 20 20 50.0 50.0 57.8 58.1 0.0 0.0 0.275279 63941 64988 112-1174 1.000000 79.3 petA-psbJ_p5 petA-psbJ 5 TGTTCTTCTTGGCATCCGTT CCGGATTGGGTTCATCTCTG 20 20 45.0 55.0 57.7 58.0 0.0 0.0 0.311310 63941 64988 113-1166 1.000000 79.0 psbE-petL_p1 psbE-petL 1 CAACCCGCAATGAATAGGGA AGCAGCCAATAGAAAACCGA 20 20 50.0 45.0 57.9 57.5 6.4 0.0 0.541273 65758 66718 113-1107 1.000000 80.0 psbE-petL_p2 psbE-petL 2 ACTGACGAATAACCAACCCG AGCAGCCAATAGAAAACCGA 20 20 50.0 45.0 57.9 57.5 0.0 0.0 0.578888 65758 66718 115-1120 1.000000 79.7 psbE-petL_p3 psbE-petL 3 ACGAATAACCAACCCGCAAT AGCAGCCAATAGAAAACCGA 20 20 45.0 45.0 58.2 57.5 0.0 0.0 0.660959 65758 66718 114-1116 1.000000 79.1 psbE-petL_p4 psbE-petL 4 CGAATAACCAACCCGCAATG AGCAGCCAATAGAAAACCGA 20 20 50.0 45.0 57.8 57.5 0.0 0.0 0.677289 65758 66718 113-1115 1.000000 78.9 psbE-petL_p5 psbE-petL 5 ACCAACCCGCAATGAATAGG AGCAGCCAATAGAAAACCGA 20 20 50.0 45.0 58.2 57.5 0.0 0.0 0.727231 65758 66718 114-1109 1.000000 78.5 ycf2_p1 ycf2 1 TTCTATAGGAACTGGGCGGT ATCGGTCTATTTTCGGCGTC 20 20 50.0 50.0 57.8 58.2 0.0 6.8 0.320916 92419 92538 114-251 1.000000 84.0 ycf2_p2 ycf2 2 TCTATAGGAACTGGGCGGTC ATCGGTCTATTTTCGGCGTC 20 20 55.0 50.0 58.3 58.2 0.0 6.8 0.449948 92419 92538 113-250 1.000000 83.0 ycf2_p3 ycf2 3 TTCTATAGGAACTGGGCGGT AATCGGTCTATTTTCGGCGT 20 20 50.0 45.0 57.8 57.7 0.0 6.8 0.474763 92419 92538 113-252 1.000000 82.7 ycf2_p4 ycf2 4 TTCTATAGGAACTGGGCGGT CGGTCTATTTTCGGCGTCAT 20 20 50.0 50.0 57.8 58.4 0.0 6.8 0.602508 92419 92538 113-249 1.000000 81.8 ycf2_p5 ycf2 5 TCTATAGGAACTGGGCGGTC AATCGGTCTATTTTCGGCGT 20 20 55.0 45.0 58.3 57.7 0.0 6.8 0.603796 92419 92538 112-251 1.000000 81.7 ndhF-rpl32_p1 ndhF-rpl32 1 TGTTGCTGTCGGAATAAGCA ACTGACTTTGCTAAAGAAAAAGCT 20 24 45.0 33.3 57.8 57.5 7.1 13.3 4.634189 113292 114282 116-1209 1.000000 44.7 ndhF-rpl32_p2 ndhF-rpl32 2 TGTTGCTGTCGGAATAAGCA ACTGACTTTGCTAAAGAAAAAGC 20 23 45.0 34.8 57.8 56.2 7.1 13.3 4.970056 113292 114282 116-1209 1.000000 42.0 ndhF-rpl32_p3 ndhF-rpl32 3 TGCTGTCGGAATAAGCAGAA ACTGACTTTGCTAAAGAAAAAGCT 20 24 45.0 33.3 57.2 57.5 7.1 13.3 5.217430 113292 114282 116-1206 1.000000 41.8 ndhF-rpl32_p4 ndhF-rpl32 4 TTGCTGTCGGAATAAGCAGA ACTGACTTTGCTAAAGAAAAAGCT 20 24 45.0 33.3 57.2 57.5 10.1 13.3 5.217430 113292 114282 117-1207 1.000000 41.8 ndhF-rpl32_p5 ndhF-rpl32 5 TGTTGCTGTCGGAATAAGCA CTGACTTTGCTAAAGAAAAAGCT 20 23 45.0 34.8 57.8 55.9 7.1 13.3 5.229486 113292 114282 115-1208 1.000000 41.8 ccsA_p1 ccsA 1 GTGAAATCGGTAGACACGCT GGATTCTGGACCACGAGAAC 20 20 50.0 55.0 58.0 58.0 0.0 0.0 0.019370 115544 116515 114-1482 1.000000 81.4 ccsA_p2 ccsA 2 TGAAATCGGTAGACACGCTG GGATTCTGGACCACGAGAAC 20 20 50.0 55.0 58.0 58.0 0.0 0.0 0.020741 115544 116515 113-1481 1.000000 81.4 ccsA_p3 ccsA 3 GAGTGGCGGCATACTGTAAA GGATTCTGGACCACGAGAAC 20 20 50.0 55.0 58.0 58.0 17.2 0.0 0.030082 115544 116515 113-1422 1.000000 81.3 ccsA_p4 ccsA 4 GTGAAATCGGTAGACACGCT TTCTCGATGGCTTCTCTTGC 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.023566 115544 116515 114-1706 1.000000 81.2 ccsA_p5 ccsA 5 TGAAATCGGTAGACACGCTG TTCTCGATGGCTTCTCTTGC 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.024937 115544 116515 113-1705 1.000000 81.2 ccsA-ndhD_p1 ccsA-ndhD 1 CGAATTCGTCACTTGTAGCG TCGCTATCAGTTGACAAGGT 20 20 50.0 45.0 57.3 56.6 19.7 0.0 2.098320 116516 116737 112-395 1.000000 66.5 ccsA-ndhD_p2 ccsA-ndhD 2 CGAATTCGTCACTTGTAGCG TTCGCTATCAGTTGACAAGGT 20 21 50.0 42.9 57.3 57.3 19.7 0.0 2.356500 116516 116737 113-396 1.000000 64.4 ccsA-ndhD_p3 ccsA-ndhD 3 ATTCGTCACTTGTAGCGTCT TCGCTATCAGTTGACAAGGT 20 20 45.0 45.0 57.0 56.6 0.0 0.0 2.431571 116516 116737 114-392 1.000000 63.9 ccsA-ndhD_p4 ccsA-ndhD 4 CGAATTCGTCACTTGTAGCG TCAGTTGACAAGGTACAAGCT 20 21 50.0 42.9 57.3 57.2 19.7 0.0 2.516687 116516 116737 113-389 1.000000 63.2 ccsA-ndhD_p5 ccsA-ndhD 5 CGAATTCGTCACTTGTAGCG TTTCGCTATCAGTTGACAAGGT 20 22 50.0 40.9 57.3 58.0 19.7 0.0 2.681349 116516 116737 114-397 1.000000 61.8 ndhG-ndhI_p1 ndhG-ndhI 1 ACTCCATCTCCAACAGTCCA AGCAGCAAGGTACATTGGTC 20 20 50.0 50.0 58.0 58.2 0.0 20.9 0.203642 120030 120409 115-1169 1.000000 79.6 ndhG-ndhI_p2 ndhG-ndhI 2 ACTCCATCTCCAACAGTCCA GAGCAGCAAGGTACATTGGT 20 20 50.0 50.0 58.0 58.2 0.0 18.4 0.203642 120030 120409 114-1170 1.000000 79.6 ndhG-ndhI_p3 ndhG-ndhI 3 ACTCCATCTCCAACAGTCCA AACAATACGAGCAGCAAGGT 20 20 50.0 45.0 58.0 57.8 0.0 0.0 0.215031 120030 120409 114-1178 1.000000 79.5 ndhG-ndhI_p4 ndhG-ndhI 4 ACTCCATCTCCAACAGTCCA ACCCCCTTGATTCAAGAACG 20 20 50.0 50.0 58.0 57.8 0.0 24.7 0.230400 120030 120409 115-711 0.800000 72.0 ndhG-ndhI_p5 ndhG-ndhI 5 ACTCCATCTCCAACAGTCCA CCCCTTGATTCAAGAACGGT 20 20 50.0 50.0 58.0 57.8 0.0 24.7 0.230400 120030 120409 114-709 0.800000 72.0 ycf1_p1 ycf1 1 AGAAAAGGATAGGTGTGGTGA CCATTTCCAACGCTGAAACA 21 20 42.9 45.0 56.3 57.2 0.0 0.0 3.524819 127054 127173 114-256 1.000000 53.9 ycf1_p2 ycf1 2 AAGAAAAGGATAGGTGTGGTGA CCATTTCCAACGCTGAAACA 22 20 40.9 45.0 57.0 57.2 0.0 0.0 3.785088 127054 127173 115-257 1.000000 51.8 ycf1_p3 ycf1 3 AGAAAAGGATAGGTGTGGTGA TCCATTTCCAACGCTGAAAC 21 20 42.9 45.0 56.3 56.9 0.0 0.0 3.811180 127054 127173 114-257 1.000000 51.6 ycf1_p4 ycf1 4 AGAAAAGGATAGGTGTGGTGA CCATTTCCAACGCTGAAACAA 21 21 42.9 42.9 56.3 57.9 0.0 0.0 3.824388 127054 127173 115-256 1.000000 51.5 ycf1_p5 ycf1 5 AGAAAAGGATAGGTGTGGTGAT CCATTTCCAACGCTGAAACA 22 20 40.9 45.0 56.8 57.2 0.0 0.0 3.998559 127054 127173 114-256 1.000000 50.1