feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 4 76 -1 73 LSC 0.000000 0 0 26 10 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_001 igs trnH|psbA trnH-psbA 77 340 0 264 LSC 0.076851 76 58 99 13 no 1.000000 16 1.000000 0.076153 0.943182 77.000000 psbA gene psbA psbA 341 1402 -1 1062 LSC 0.007478 39 0 30 51 no 0.875000 15 0.933333 0.007478 1.000000 51.600000 IGS_002 igs psbA|trnK psbA-trnK 1403 1697 0 295 LSC 0.038070 42 62 242 55 no 1.000000 16 1.000000 0.034754 0.966102 75.600000 trnK_part2 tRNA trnK trnK 1698 1732 -1 35 LSC 0.000000 0 0 13 20 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 matK gene matK matK 2045 3625 -1 1581 LSC 0.020662 156 6 23 18 no 1.000000 16 1.000000 0.020726 0.996205 66.900000 IGS_005 igs matK|trnK matK-trnK 3626 4294 0 669 LSC 0.023642 76 19 25 38 no 1.000000 16 1.000000 0.023666 1.000000 72.100000 trnK_part1 tRNA trnK trnK 4295 4331 -1 37 LSC 0.000000 0 0 39 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_006 igs trnK|rps16 trnK-rps16 4332 5042 0 711 LSC 0.055935 154 290 76 6 yes 1.000000 16 1.000000 0.052558 0.971871 83.200000 rps16 gene rps16 rps16 5043 5351 -1 309 LSC 0.051957 80 95 4 17 no 1.000000 16 1.000000 0.053303 1.000000 78.600000 IGS_007 igs rps16|trnQ rps16-trnQ 5352 5650 0 299 LSC 0.054247 67 28 28 75 no 1.000000 16 1.000000 0.053085 1.000000 80.600000 trnQ tRNA trnQ trnQ 5651 5722 -1 72 LSC 0.001736 1 0 7 3 no 0.062500 2 0.500000 0.001736 1.000000 22.700000 IGS_008 igs trnQ|psbK trnQ-psbK 5723 6065 0 343 LSC 0.045845 57 7 79 24 no 1.000000 16 1.000000 0.043597 0.997085 75.700000 psbK gene psbK psbK 6066 6251 1 186 LSC 0.012052 13 0 10 3 no 0.437500 9 0.777778 0.012052 1.000000 41.300000 IGS_009 igs psbK|psbI psbK-psbI 6252 6657 0 406 LSC 0.060280 79 47 3 115 no 1.000000 16 1.000000 0.051942 0.975369 79.900000 psbI gene psbI psbI 6658 6768 1 111 LSC 0.003378 3 0 60 4 no 0.187500 4 0.750000 0.003378 1.000000 27.500000 IGS_010 igs psbI|trnS psbI-trnS 6769 6855 0 87 LSC 0.035057 12 0 171 136 no 0.500000 12 0.666667 0.035057 1.000000 66.600000 trnS tRNA trnS trnS 6856 6943 1 88 LSC 0.001420 1 0 3 48 no 0.062500 2 0.500000 0.001420 1.000000 22.200000 IGS_011 igs trnS|trnG trnS-trnG 6944 7631 0 688 LSC 0.047265 128 143 91 35 yes 1.000000 16 1.000000 0.043014 0.981105 84.900000 trnG_part1 tRNA trnG trnG 7632 7654 1 23 LSC 0.000000 0 0 15 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 trnG_part2 tRNA trnG trnG 8375 8423 1 49 LSC 0.000000 0 0 27 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_014 igs trnG|trnR trnG-trnR 8424 8565 0 142 LSC 0.085171 43 33 76 88 yes 1.000000 16 1.000000 0.084260 1.000000 83.800000 trnR tRNA trnR trnR 8566 8637 1 72 LSC 0.000000 0 2 4 16 no 0.000000 2 0.000000 0.000000 1.000000 22.400000 IGS_015 igs trnR|atpA trnR-atpA 8638 8942 0 305 LSC 0.074478 73 77 76 1 yes 1.000000 16 1.000000 0.069581 0.993443 77.800000 atpA gene atpA atpA 8943 10463 -1 1521 LSC 0.010930 69 0 0 23 no 1.000000 16 1.000000 0.010930 1.000000 54.300000 IGS_016 igs atpA|atpF atpA-atpF 10464 10539 0 76 LSC 0.037887 10 3 13 35 no 0.437500 11 0.636364 0.036371 1.000000 62.300000 atpF gene atpF atpF 10540 11814 -1 1275 LSC 0.016568 102 27 12 32 no 1.000000 16 1.000000 0.016588 0.996078 64.600000 IGS_017 igs atpF|atpH atpF-atpH 11815 12301 0 487 LSC 0.038798 87 51 152 15 no 1.000000 16 1.000000 0.036992 0.965092 77.400000 atpH gene atpH atpH 12302 12547 -1 246 LSC 0.007215 5 0 5 47 no 0.187500 6 0.500000 0.007215 1.000000 28.400000 IGS_018 igs atpH|atpI atpH-atpI 12548 13042 0 495 LSC 0.035753 72 29 65 57 no 0.875000 15 0.933333 0.036087 0.997980 78.100000 atpI gene atpI atpI 13043 13792 -1 750 LSC 0.007811 26 0 14 54 no 0.875000 15 0.933333 0.007812 1.000000 50.300000 IGS_019 igs atpI|rps2 atpI-rps2 13793 14037 0 245 LSC 0.049946 55 8 171 209 yes 1.000000 16 1.000000 0.048561 1.000000 89.200000 rps2 gene rps2 rps2 14038 14748 -1 711 LSC 0.007290 26 0 24 19 no 0.750000 14 0.857143 0.007291 1.000000 48.300000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 14749 14956 0 208 LSC 0.027644 30 8 20 40 no 0.750000 14 0.857143 0.027882 1.000000 63.900000 rpoC2 gene rpoC2 rpoC2 14957 19117 -1 4161 LSC 0.012328 240 38 12 96 no 1.000000 16 1.000000 0.012209 0.997356 53.500000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 19118 19298 0 181 LSC 0.013957 11 8 4 64 no 0.750000 14 0.857143 0.013577 0.972376 51.600000 rpoC1 gene rpoC1 rpoC1 19299 22122 -1 2824 LSC 0.011247 134 31 11 12 no 1.000000 16 1.000000 0.011102 1.000000 54.100000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 22123 22148 0 26 LSC 0.017949 2 0 235 50 no 0.000000 3 0.000000 0.017949 1.000000 40.200000 rpoB gene rpoB rpoB 22149 25367 -1 3219 LSC 0.007608 109 0 9 35 no 1.000000 16 1.000000 0.007609 1.000000 48.600000 IGS_023 igs rpoB|trnC rpoB-trnC 25368 26406 0 1039 LSC 0.027822 122 126 6 79 no 1.000000 16 1.000000 0.027081 0.999038 75.100000 trnC tRNA trnC trnC 26407 26477 1 71 LSC 0.000000 0 0 28 8 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_024 igs trnC|ycf6 trnC-ycf6 26478 27083 0 606 LSC 0.029886 78 64 99 174 no 0.875000 15 0.933333 0.027940 0.996700 80.400000 ycf6 gene ycf6 ycf6 27084 27173 1 90 LSC 0.004167 3 0 20 84 no 0.125000 3 0.666667 0.004167 1.000000 28.600000 IGS_025 igs ycf6|psbM ycf6-psbM 27174 27728 0 555 LSC 0.026469 63 67 110 96 no 1.000000 16 1.000000 0.027678 0.963964 79.100000 psbM gene psbM psbM 27729 27833 -1 105 LSC 0.004444 2 0 8 9 no 0.125000 4 0.500000 0.004447 1.000000 26.100000 IGS_026 igs psbM|trnD psbM-trnD 27834 28879 0 1046 LSC 0.029955 136 185 8 82 no 1.000000 16 1.000000 0.028470 0.965583 74.900000 trnD tRNA trnD trnD 28880 28953 -1 74 LSC 0.000000 0 0 11 8 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_027 igs trnD|trnY trnD-trnY 28954 29367 0 414 LSC 0.040447 70 25 85 118 yes 1.000000 16 1.000000 0.041055 0.990338 82.600000 trnY tRNA trnY trnY 29368 29451 -1 84 LSC 0.001488 1 0 1 34 no 0.062500 2 0.500000 0.001488 1.000000 22.200000 IGS_028 igs trnY|trnE trnY-trnE 29452 29510 0 59 LSC 0.017797 2 0 85 79 no 0.125000 4 0.500000 0.017797 1.000000 39.300000 trnE tRNA trnE trnE 29511 29583 -1 73 LSC 0.000000 0 0 20 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_029 igs trnE|trnT trnE-trnT 29584 30416 0 833 LSC 0.033278 122 89 93 95 yes 1.000000 16 1.000000 0.032126 0.989196 83.600000 trnT tRNA trnT trnT 30417 30488 1 72 LSC 0.000000 0 1 5 23 no 0.000000 2 0.000000 0.000000 1.000000 20.800000 IGS_030 igs trnT|psbD trnT-psbD 30489 31702 0 1214 LSC 0.028482 156 60 77 275 no 1.000000 16 1.000000 0.028078 0.991763 80.600000 psbD gene psbD psbD 31703 32764 1 1062 LSC 0.003460 17 0 117 117 no 0.500000 11 0.727273 0.003460 1.000000 46.700000 psbC gene psbC psbC 32748 34133 1 1386 LSC 0.004786 33 6 300 23 no 0.750000 14 0.857143 0.004790 1.000000 46.400000 IGS_032 igs psbC|trnS psbC-trnS 34134 34313 0 180 LSC 0.035126 29 19 300 115 no 1.000000 16 1.000000 0.035041 1.000000 80.200000 trnS tRNA trnS trnS 34314 34397 1 84 LSC 0.002976 2 0 6 31 no 0.125000 3 0.666667 0.002976 1.000000 25.900000 IGS_033 igs trnS|ycf9 trnS-ycf9 34398 34741 0 344 LSC 0.017442 31 18 90 170 no 0.875000 15 0.933333 0.017526 1.000000 68.100000 ycf9 gene ycf9 ycf9 34742 34930 1 189 LSC 0.003307 2 0 67 27 no 0.062500 3 0.333333 0.003307 1.000000 24.800000 IGS_034 igs ycf9|trnG ycf9-trnG 34931 35420 0 490 LSC 0.034333 70 57 18 77 no 1.000000 16 1.000000 0.033816 1.000000 76.600000 IGS_035 igs trnG|trnfM trnG-trnfM 35492 35639 0 148 LSC 0.021445 14 29 92 105 no 0.562500 12 0.750000 0.022564 0.972973 62.400000 trnfM tRNA trnfM trnfM 35640 35713 -1 74 LSC 0.000000 0 0 41 31 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_036 igs trnfM|rps14 trnfM-rps14 35714 35873 0 160 LSC 0.015000 10 0 115 42 no 0.437500 10 0.700000 0.015000 1.000000 44.700000 rps14 gene rps14 rps14 35874 36176 -1 303 LSC 0.010011 14 0 40 34 no 0.625000 12 0.833333 0.010011 1.000000 43.400000 IGS_037 igs rps14|psaB rps14-psaB 36177 36309 0 133 LSC 0.028303 13 8 96 300 no 0.437500 9 0.777778 0.028200 1.000000 65.200000 psaB gene psaB psaB 36310 38514 -1 2205 LSC 0.003915 40 0 6 300 no 1.000000 16 1.000000 0.003915 1.000000 46.800000 IGS_038 igs psaB|psaA psaB-psaA 38515 38539 0 25 LSC 0.000000 0 0 167 300 no 0.000000 1 0.000000 0.000000 1.000000 31.300000 psaA gene psaA psaA 38540 40792 -1 2253 LSC 0.003521 41 0 192 38 no 0.875000 15 0.933333 0.003521 1.000000 46.500000 IGS_039 igs psaA|ycf3 psaA-ycf3 40793 41498 0 706 LSC 0.026525 75 72 119 23 no 1.000000 16 1.000000 0.025063 0.985836 75.500000 ycf3 gene ycf3 ycf3 41499 42687 -1 1189 LSC 0.012371 69 32 5 98 no 1.000000 16 1.000000 0.011690 0.998318 60.100000 IGS_040 igs ycf3|trnS ycf3-trnS 42688 43772 0 1085 LSC 0.010037 59 35 260 115 no 0.875000 15 0.933333 0.009655 0.998157 65.200000 trnS tRNA trnS trnS 43773 43859 1 87 LSC 0.007184 5 0 110 28 no 0.312500 6 0.833333 0.007184 1.000000 37.100000 IGS_041 igs trnS|rps4 trnS-rps4 43860 44139 0 280 LSC 0.020158 27 19 197 114 no 0.875000 15 0.933333 0.019442 1.000000 70.900000 rps4 gene rps4 rps4 44140 44745 -1 606 LSC 0.007660 25 0 69 18 no 0.875000 15 0.933333 0.007660 1.000000 51.400000 IGS_042 igs rps4|trnT rps4-trnT 44746 45215 0 470 LSC 0.041748 57 164 215 167 yes 1.000000 16 1.000000 0.040292 0.823404 83.400000 trnT tRNA trnT trnT 45216 45288 -1 73 LSC 0.000000 0 0 16 94 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_043 igs trnT|trnL trnT-trnL 45289 46117 0 829 LSC 0.027690 109 98 89 105 yes 1.000000 16 1.000000 0.026727 0.983112 80.700000 trnL_part1 tRNA trnL trnL 46118 46152 1 35 LSC 0.000000 0 0 70 70 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 trnL_part2 tRNA trnL trnL 46474 46523 1 50 LSC 0.000000 0 0 113 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_046 igs trnL|trnF trnL-trnF 46524 46869 0 346 LSC 0.046945 58 4 163 80 no 0.875000 15 0.933333 0.045814 0.997110 77.100000 trnF tRNA trnF trnF 46870 46942 1 73 LSC 0.000000 0 0 12 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_047 igs trnF|ndhJ trnF-ndhJ 46943 47625 0 683 LSC 0.037693 99 226 85 294 yes 1.000000 16 1.000000 0.029681 0.893119 81.000000 ndhJ gene ndhJ ndhJ 47626 48102 -1 477 LSC 0.006761 20 0 32 29 no 1.000000 16 1.000000 0.006761 1.000000 51.600000 IGS_048 igs ndhJ|psbG ndhJ-psbG 48103 48204 0 102 LSC 0.013562 7 0 29 31 no 0.375000 8 0.750000 0.013562 1.000000 42.600000 psbG gene psbG psbG 48205 48882 -1 678 LSC 0.008727 32 0 19 27 no 1.000000 16 1.000000 0.008728 1.000000 55.000000 IGS_049 igs psbG|ndhC psbG-ndhC 48883 48951 0 69 LSC 0.028999 8 12 31 69 no 0.312500 9 0.555556 0.029976 1.000000 57.900000 ndhC gene ndhC ndhC 48952 49314 -1 363 LSC 0.009871 18 0 2 29 no 0.750000 14 0.857143 0.009871 1.000000 44.900000 IGS_050 igs ndhC|trnV ndhC-trnV 49315 50180 0 866 LSC 0.042025 142 215 75 116 yes 1.000000 16 1.000000 0.042653 0.991917 86.000000 trnV_part2 tRNA trnV trnV 50181 50215 -1 35 LSC 0.000000 0 0 5 81 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 trnV_part1 tRNA trnV trnV 50828 50866 -1 39 LSC 0.000000 0 0 95 71 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 IGS_053 igs trnV|trnM trnV-trnM 50867 51051 0 185 LSC 0.015766 13 8 134 94 no 0.625000 12 0.833333 0.015952 0.994595 58.600000 trnM tRNA trnM trnM 51052 51124 1 73 LSC 0.003425 2 0 30 21 no 0.125000 3 0.666667 0.003425 1.000000 27.600000 IGS_054 igs trnM|atpE trnM-atpE 51125 51266 0 142 LSC 0.030047 20 9 103 36 no 0.875000 15 0.933333 0.030910 1.000000 69.600000 atpE gene atpE atpE 51267 51665 -1 399 LSC 0.012030 16 0 14 300 no 0.437500 10 0.700000 0.012030 1.000000 40.500000 atpB gene atpB atpB 51662 53158 -1 1497 LSC 0.006335 43 0 37 2 no 0.875000 15 0.933333 0.006335 1.000000 48.000000 IGS_056 igs atpB|rbcL atpB-rbcL 53159 53964 0 806 LSC 0.026449 86 135 21 300 no 1.000000 16 1.000000 0.025920 0.990074 75.300000 rbcL gene rbcL rbcL 53965 55404 1 1440 LSC 0.005700 42 3 87 44 no 1.000000 16 1.000000 0.005691 1.000000 53.500000 IGS_057 igs rbcL|accD rbcL-accD 55405 56096 0 692 LSC 0.030823 88 46 4 23 no 1.000000 16 1.000000 0.030109 0.986994 76.100000 accD gene accD accD 56097 57560 1 1464 LSC 0.019537 124 122 18 14 no 1.000000 16 1.000000 0.019284 1.000000 70.100000 IGS_058 igs accD|psaI accD-psaI 57561 58244 0 684 LSC 0.027394 83 259 11 27 no 1.000000 16 1.000000 0.027504 0.980994 74.300000 psaI gene psaI psaI 58245 58358 1 114 LSC 0.006433 5 0 83 63 no 0.187500 5 0.600000 0.006433 1.000000 35.400000 IGS_059 igs psaI|ycf4 psaI-ycf4 58359 58778 0 420 LSC 0.021726 49 9 86 118 no 1.000000 16 1.000000 0.022095 0.983333 70.800000 ycf4 gene ycf4 ycf4 58779 59333 1 555 LSC 0.005736 17 6 32 2 no 0.687500 13 0.846154 0.005751 1.000000 44.800000 IGS_060 igs ycf4|ycf10/cemA ycf4-ycf10/cemA 59334 59783 0 450 LSC 0.027897 59 87 87 15 no 1.000000 16 1.000000 0.027422 1.000000 72.400000 ycf10/cemA gene ycf10/cemA ycf10/cemA 59784 60473 1 690 LSC 0.010531 32 0 3 16 no 0.875000 15 0.933333 0.010531 1.000000 52.200000 IGS_061 igs ycf10/cemA|petA ycf10/cemA-petA 60474 60703 0 230 LSC 0.019384 17 17 102 14 no 0.750000 14 0.857143 0.020026 0.973913 57.100000 petA gene petA petA 60704 61666 1 963 LSC 0.006222 33 0 99 20 no 0.750000 14 0.857143 0.006223 1.000000 47.600000 IGS_062 igs petA|psbJ petA-psbJ 61667 62630 0 964 LSC 0.030546 123 48 259 64 no 1.000000 16 1.000000 0.029794 0.989627 80.500000 psbJ gene psbJ psbJ 62631 62753 -1 123 LSC 0.006301 3 0 27 41 no 0.125000 4 0.500000 0.006301 1.000000 29.000000 IGS_063 igs psbJ|psbL psbJ-psbL 62754 62896 0 143 LSC 0.013112 10 0 58 45 no 0.437500 10 0.700000 0.013112 1.000000 45.000000 psbL gene psbL psbL 62897 63013 -1 117 LSC 0.004131 3 0 35 48 no 0.062500 3 0.333333 0.004131 1.000000 27.600000 IGS_064 igs psbL|psbF psbL-psbF 63014 63034 0 21 LSC 0.005952 1 0 71 27 no 0.062500 2 0.500000 0.005952 1.000000 30.600000 psbF gene psbF psbF 63035 63154 -1 120 LSC 0.001944 1 0 92 3 no 0.000000 2 0.000000 0.001944 1.000000 20.900000 IGS_065 igs psbF|psbE psbF-psbE 63155 63163 0 9 LSC 0.072222 2 0 92 180 no 0.062500 3 0.333333 NA 1.000000 61.800000 psbE gene psbE psbE 63164 63415 -1 252 LSC 0.002414 4 0 5 70 no 0.187500 5 0.600000 0.002414 1.000000 25.700000 IGS_066 igs psbE|ORF31 psbE-ORF31 63416 64363 0 948 LSC 0.035752 131 343 71 14 no 1.000000 16 1.000000 0.033517 0.995781 78.600000 ORF31 gene ORF31 ORF31 64364 64459 1 96 LSC 0.014410 4 0 17 15 no 0.062500 4 0.250000 0.014410 1.000000 32.700000 IGS_067 igs ORF31|petG ORF31-petG 64460 64647 0 188 LSC 0.015603 12 12 39 26 no 0.437500 10 0.700000 0.015820 0.994681 49.900000 petG gene petG petG 64648 64761 1 114 LSC 0.003143 2 0 88 37 no 0.062500 3 0.333333 0.003143 1.000000 26.300000 IGS_068 igs petG|trnW petG-trnW 64762 64893 0 132 LSC 0.026326 20 9 87 78 no 1.000000 16 1.000000 0.026794 1.000000 73.600000 trnW tRNA trnW trnW 64894 64967 -1 74 LSC 0.001689 1 0 27 4 no 0.062500 2 0.500000 0.001689 1.000000 22.700000 IGS_069 igs trnW|trnP trnW-trnP 64968 65155 0 188 LSC 0.030275 24 2 101 171 no 0.875000 15 0.933333 0.030333 1.000000 70.200000 trnP tRNA trnP trnP 65156 65229 -1 74 LSC 0.000000 0 0 9 97 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_070 igs trnP|psaJ trnP-psaJ 65230 65568 0 339 LSC 0.041317 59 98 83 93 no 1.000000 16 1.000000 0.039423 0.988201 80.700000 psaJ gene psaJ psaJ 65569 65703 1 135 LSC 0.006420 3 0 31 7 no 0.125000 5 0.400000 0.006420 1.000000 27.300000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 65704 66126 0 423 LSC 0.048314 80 38 7 24 no 1.000000 16 1.000000 0.045625 0.992908 80.600000 rpl33 gene rpl33 rpl33 66127 66327 1 201 LSC 0.010240 8 0 13 2 no 0.375000 10 0.600000 0.010240 1.000000 35.500000 IGS_072 igs rpl33|rps18 rpl33-rps18 66328 66560 0 233 LSC 0.038061 28 25 9 18 no 0.875000 15 0.933333 0.036504 0.935622 69.200000 rps18 gene rps18 rps18 66561 66866 1 306 LSC 0.003922 7 0 8 4 no 0.375000 9 0.666667 0.003922 1.000000 30.800000 IGS_073 igs rps18|rpl20 rps18-rpl20 66867 67161 0 295 LSC 0.038005 45 29 24 6 no 1.000000 16 1.000000 0.037218 0.972881 72.700000 rpl20 gene rpl20 rpl20 67162 67515 -1 354 LSC 0.009769 16 0 26 33 no 0.625000 13 0.769231 0.009773 1.000000 43.600000 IGS_074 igs rpl20|rps12 rpl20-rps12 67516 68279 0 764 LSC 0.016503 61 25 53 36 no 1.000000 16 1.000000 0.016678 0.992147 67.600000 rps12_part1 gene rps12 rps12 68280 68393 -1 114 LSC 0.007456 5 0 13 3 no 0.250000 6 0.666667 0.007456 1.000000 32.500000 IGS_075 igs rps12|clpP rps12-clpP 68394 68584 0 191 LSC 0.049149 33 32 44 5 no 0.875000 15 0.933333 0.050869 0.931937 73.700000 clpP gene clpP clpP 68585 70658 -1 2074 LSC 0.027219 225 114 11 61 no 1.000000 16 1.000000 0.025876 0.983124 73.700000 IGS_076 igs clpP|psbB clpP-psbB 70659 71116 0 458 LSC 0.019574 36 33 45 60 no 0.812500 14 0.928571 0.015631 0.982533 64.400000 psbB gene psbB psbB 71117 72643 1 1527 LSC 0.006330 46 0 90 1 no 0.875000 15 0.933333 0.006330 1.000000 48.000000 IGS_077 igs psbB|psbT psbB-psbT 72644 72833 0 190 LSC 0.020263 20 5 116 82 no 0.687500 13 0.846154 0.020361 1.000000 62.600000 psbT gene psbT psbT 72834 72935 1 102 LSC 0.004739 3 0 41 8 no 0.187500 4 0.750000 0.004739 1.000000 28.700000 IGS_078 igs psbT|psbN psbT-psbN 72936 73000 0 65 LSC 0.018590 7 0 19 213 no 0.375000 8 0.750000 0.018590 1.000000 48.100000 psbN gene psbN psbN 73001 73132 -1 132 LSC 0.001894 2 0 39 81 no 0.125000 3 0.666667 0.001894 1.000000 26.800000 IGS_079 igs psbN|psbH psbN-psbH 73133 73236 0 104 LSC 0.009455 7 0 171 3 no 0.312500 7 0.714286 0.009455 1.000000 37.500000 psbH gene psbH psbH 73237 73458 1 222 LSC 0.014565 21 0 22 2 no 0.687500 13 0.846154 0.014565 1.000000 50.200000 IGS_080 igs psbH|petB psbH-petB 73459 73596 0 138 LSC 0.013285 12 4 69 23 no 0.625000 12 0.833333 0.013680 0.971014 51.500000 petB gene petB petB 73597 75033 1 1437 LSC 0.011667 81 29 78 1 no 1.000000 16 1.000000 0.011544 1.000000 58.600000 IGS_081 igs petB|petD petB-petD 75034 75230 0 197 LSC 0.017936 17 9 66 24 no 0.687500 13 0.846154 0.017952 1.000000 57.900000 petD gene petD petD 75231 76432 1 1202 LSC 0.016255 78 15 41 11 no 0.875000 15 0.933333 0.016080 1.000000 59.200000 IGS_082 igs petD|rpoA petD-rpoA 76433 76585 0 153 LSC 0.027832 15 5 36 7 no 0.500000 10 0.800000 0.027527 1.000000 57.500000 rpoA gene rpoA rpoA 76586 77593 -1 1008 LSC 0.011223 51 6 3 8 no 1.000000 16 1.000000 0.011130 1.000000 56.100000 IGS_083 igs rpoA|rps11 rpoA-rps11 77594 77662 0 69 LSC 0.018841 4 0 136 117 no 0.125000 6 0.333333 0.018841 1.000000 45.600000 rps11 gene rps11 rps11 77663 78079 -1 417 LSC 0.007954 19 0 21 12 no 0.500000 10 0.800000 0.007954 1.000000 40.700000 IGS_084 igs rps11|rpl36 rps11-rpl36 78080 78191 0 112 LSC 0.029145 16 18 63 27 no 1.000000 16 1.000000 0.022326 0.982143 70.500000 rpl36 gene rpl36 rpl36 78192 78305 -1 114 LSC 0.017325 6 0 20 27 no 0.187500 7 0.428571 0.017325 1.000000 38.100000 IGS_085 igs rpl36|rps8 rpl36-rps8 78306 78592 0 287 LSC 0.023312 36 17 17 44 no 1.000000 16 1.000000 0.023538 0.968641 66.800000 rps8 gene rps8 rps8 78593 78997 -1 405 LSC 0.013827 26 0 26 79 no 0.812500 14 0.928571 0.013827 1.000000 52.400000 IGS_086 igs rps8|rpl14 rps8-rpl14 78998 79217 0 220 LSC 0.027725 27 30 58 9 no 1.000000 16 1.000000 0.027081 1.000000 69.100000 rpl14 gene rpl14 rpl14 79218 79586 -1 369 LSC 0.005736 13 0 4 28 no 0.375000 8 0.750000 0.005736 1.000000 34.500000 IGS_087 igs rpl14|rpl16 rpl14-rpl16 79587 79719 0 133 LSC 0.027663 12 56 89 2 no 0.750000 14 0.857143 0.025066 0.947368 60.400000 rpl16 gene rpl16 rpl16 79720 81242 -1 1523 LSC 0.025793 157 100 5 57 no 1.000000 16 1.000000 0.022957 0.978989 73.500000 IGS_088 igs rpl16|rps3 rpl16-rps3 81243 81416 0 174 LSC 0.034729 24 1 32 6 no 1.000000 16 1.000000 0.032635 0.994253 66.600000 rps3 gene rps3 rps3 81417 82073 -1 657 LSC 0.008904 29 0 7 34 no 0.562500 12 0.750000 0.008904 1.000000 45.600000 rpl22 gene rpl22 rpl22 82058 82540 -1 483 LSC 0.016028 38 0 46 17 no 1.000000 16 1.000000 0.016028 1.000000 59.600000 IGS_090 igs rpl22|rps19 rpl22-rps19 82541 82594 0 54 LSC 0.048148 6 3 7 102 no 0.375000 9 0.666667 0.048221 1.000000 66.600000 rps19 gene rps19 rps19 82595 82873 -1 279 LSC 0.004898 7 0 19 135 no 0.250000 7 0.571429 0.004898 1.000000 30.200000 IGS_091 igs rps19|rpl2 rps19-rpl2 82874 82934 0 61 IRb 0.002049 1 4 56 74 no 0.125000 4 0.500000 0.002158 0.950820 32.700000 rpl2 gene rpl2 rpl2 82935 84441 -1 1507 IRb 0.002334 18 4 117 300 no 0.500000 11 0.727273 0.002340 0.997346 45.900000 IGS_092 igs rpl2|rpl23 rpl2-rpl23 84442 84459 0 18 IRb 0.006944 1 0 300 300 no 0.062500 2 0.500000 NA 1.000000 45.000000 rpl23 gene rpl23 rpl23 84460 84741 -1 282 IRb 0.000000 0 5 300 300 no 0.062500 2 0.500000 0.000000 1.000000 37.100000 IGS_093 igs rpl23|trnI rpl23-trnI 84742 84909 0 168 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_094 igs trnI|ycf2 trnI-ycf2 84984 85071 0 88 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 85072 91890 1 6819 IRb 0.002907 101 42 300 293 no 1.000000 16 1.000000 0.002908 0.998240 56.400000 IGS_095 igs ycf2|orf77 ycf2-orf77 91891 92026 0 136 IRb 0.001838 2 3 300 157 no 0.125000 3 0.666667 0.001841 1.000000 38.200000 orf77 gene orf77 orf77 92027 92248 1 222 IRb 0.002815 2 2 300 300 no 0.125000 4 0.500000 0.002818 1.000000 39.600000 IGS_096 igs orf77|trnL orf77-trnL 92249 92797 0 549 IRb 0.002262 9 12 64 225 no 0.500000 10 0.800000 0.002236 1.000000 43.900000 IGS_097 igs trnL|ndhB trnL-ndhB 92879 93460 0 582 IRb 0.004253 9 28 127 300 no 0.437500 10 0.700000 0.004309 1.000000 52.000000 ndhB gene ndhB ndhB 93461 95315 -1 1855 IRb 0.001298 12 6 60 300 no 0.750000 14 0.857143 0.001290 1.000000 44.600000 IGS_098 igs ndhB|rps7 ndhB-rps7 95316 95995 0 680 IRb 0.003407 9 7 300 300 no 0.375000 10 0.600000 0.003416 1.000000 51.500000 rps7 gene rps7 rps7 95996 96463 -1 468 IRb 0.000000 0 0 76 182 no 0.000000 1 0.000000 0.000000 1.000000 27.900000 IGS_099 igs rps7|trnV rps7-trnV 96464 99225 0 2762 IRb 0.003932 47 194 300 127 no 0.875000 15 0.933333 0.003899 0.998190 58.200000 IGS_100 igs trnV|rrn16S trnV-rrn16S 99298 99528 0 231 IRb 0.003247 3 0 167 300 no 0.125000 4 0.500000 0.003247 1.000000 36.700000 rrn16S rRNA rrn16S rrn16S 99529 101019 1 1491 IRb 0.000168 2 0 175 300 no 0.125000 3 0.666667 0.000168 1.000000 40.700000 IGS_101 igs rrn16S|trnI rrn16S-trnI 101020 101244 0 225 IRb 0.000556 1 1 300 300 no 0.125000 4 0.500000 0.000556 1.000000 37.400000 trnI_part1 tRNA trnI trnI 101245 101281 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 102232 102266 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_104 igs trnI|trnA trnI-trnA 102267 102330 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 102331 102368 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 103169 103203 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_107 igs trnA|rrn23S trnA-rrn23S 103204 103355 0 152 IRb 0.000822 1 0 300 300 no 0.062500 2 0.500000 0.000822 1.000000 36.100000 rrn23S rRNA rrn23S rrn23S 103356 106165 1 2810 IRb 0.000205 3 1 300 300 no 0.125000 5 0.400000 0.000205 1.000000 39.900000 IGS_108 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 106166 106263 0 98 IRb 0.000000 0 0 300 220 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 106264 106366 1 103 IRb 0.000000 0 0 300 117 no 0.000000 1 0.000000 0.000000 1.000000 27.500000 IGS_109 igs rrn4.5S|rrn5s rrn4.5S-rrn5s 106367 106613 0 247 IRb 0.005972 6 5 300 159 no 0.250000 6 0.666667 0.005999 1.000000 43.600000 rrn5s rRNA rrn5s rrn5s 106614 106734 1 121 IRb 0.000000 0 0 2 38 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_110 igs rrn5s|trnR rrn5s-trnR 106735 106977 0 243 IRb 0.001989 3 11 123 83 no 0.187500 6 0.500000 0.002041 0.995885 36.300000 trnR tRNA trnR trnR 106978 107051 1 74 IRb 0.000000 0 0 204 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_111 igs trnR|trnN trnR-trnN 107052 107685 0 634 IRb 0.005770 19 3 278 82 no 0.750000 14 0.857143 0.005754 0.998423 52.100000 trnN tRNA trnN trnN 107686 107757 -1 72 IRb 0.000000 0 0 122 10 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_112 igs trnN|ycf1 trnN-ycf1 107758 108077 0 320 IRb 0.004063 4 0 194 300 no 0.125000 4 0.500000 0.004063 1.000000 39.500000 ycf1 gene ycf1 ycf1 108078 109037 1 960 IRb 0.002457 14 83 56 5 no 0.812500 14 0.928571 0.002458 1.000000 49.600000 ndhF gene ndhF ndhF 108999 111239 -1 2241 SSC 0.013377 141 7 45 28 no 1.000000 16 1.000000 0.013323 1.000000 58.600000 IGS_114 igs ndhF|rpl32 ndhF-rpl32 111240 112081 0 842 SSC 0.047419 144 73 8 130 yes 1.000000 16 1.000000 0.043450 0.990499 83.600000 rpl32 gene rpl32 rpl32 112082 112240 1 159 SSC 0.009591 9 0 1 9 no 0.250000 6 0.666667 0.009591 1.000000 34.900000 IGS_115 igs rpl32|trnL rpl32-trnL 112241 113005 0 765 SSC 0.065820 185 294 28 49 yes 1.000000 16 1.000000 0.061857 0.983007 85.300000 IGS_116 igs trnL|ycf5 trnL-ycf5 113086 113204 0 119 SSC 0.026303 15 6 30 56 no 0.812500 14 0.928571 0.025437 1.000000 66.600000 ycf5 gene ycf5 ycf5 113205 114227 1 1023 SSC 0.022209 105 48 46 7 no 1.000000 16 1.000000 0.022178 0.967742 71.300000 IGS_117 igs ycf5|ndhD ycf5-ndhD 114228 114446 0 219 SSC 0.045129 42 16 90 3 no 1.000000 16 1.000000 0.045840 0.990868 76.300000 ndhD gene ndhD ndhD 114447 115967 -1 1521 SSC 0.015083 102 0 11 2 no 1.000000 16 1.000000 0.015073 1.000000 59.000000 IGS_118 igs ndhD|psaC ndhD-psaC 115968 116120 0 153 SSC 0.024527 14 24 24 201 no 1.000000 16 1.000000 0.026423 0.908497 64.700000 psaC gene psaC psaC 116121 116366 -1 246 SSC 0.004505 8 0 9 48 no 0.125000 4 0.500000 0.004505 1.000000 27.900000 IGS_119 igs psaC|ndhE psaC-ndhE 116367 116611 0 245 SSC 0.039984 36 18 44 60 no 1.000000 16 1.000000 0.039837 1.000000 77.300000 ndhE gene ndhE ndhE 116612 116917 -1 306 SSC 0.007625 13 0 7 15 no 0.562500 11 0.818182 0.007625 1.000000 38.700000 IGS_120 igs ndhE|ndhG ndhE-ndhG 116918 117169 0 252 SSC 0.049036 52 12 128 24 no 0.875000 15 0.933333 0.048798 1.000000 77.400000 ndhG gene ndhG ndhG 117170 117700 -1 531 SSC 0.012508 31 0 9 7 no 0.875000 15 0.933333 0.012508 1.000000 53.400000 IGS_121 igs ndhG|ndhI ndhG-ndhI 117701 118029 0 329 SSC 0.041125 59 33 48 3 no 1.000000 16 1.000000 0.040549 0.996960 75.300000 ndhI gene ndhI ndhI 118030 118533 -1 504 SSC 0.011483 25 9 6 11 no 0.875000 15 0.933333 0.011212 1.000000 53.400000 IGS_122 igs ndhI|ndhA ndhI-ndhA 118534 118617 0 84 SSC 0.030556 10 0 95 18 no 0.500000 10 0.800000 0.030556 1.000000 55.700000 ndhA gene ndhA ndhA 118618 120792 -1 2175 SSC 0.020039 198 73 9 34 no 1.000000 16 1.000000 0.019660 0.994943 67.400000 IGS_123 igs ndhA|ndhH ndhA-ndhH 120793 120793 0 1 SSC 0.000000 0 0 20 33 no 0.000000 1 0.000000 NA 1.000000 20.200000 ndhH gene ndhH ndhH 120794 121975 -1 1182 SSC 0.007658 46 6 21 46 no 1.000000 16 1.000000 0.007603 1.000000 54.300000 IGS_124 igs ndhH|rps15 ndhH-rps15 121976 122082 0 107 SSC 0.022508 11 10 15 27 no 0.500000 11 0.727273 0.016494 0.953271 56.400000 rps15 gene rps15 rps15 122083 122349 -1 267 SSC 0.010081 11 0 37 41 no 0.500000 12 0.666667 0.010081 1.000000 40.600000 IGS_125 igs rps15|ycf1 rps15-ycf1 122350 122681 0 332 SSC 0.045818 63 30 56 4 no 1.000000 16 1.000000 0.040912 0.996988 77.300000 ycf1 gene ycf1 ycf1 122682 127847 -1 5166 SSC 0.043949 873 314 0 56 yes 1.000000 16 1.000000 0.043397 0.983159 75.300000 IGS_126 igs ycf1|trnN ycf1-trnN 127848 128167 0 320 IRa 0.004063 4 0 300 194 no 0.125000 4 0.500000 0.004063 1.000000 39.500000 trnN tRNA trnN trnN 128168 128239 1 72 IRa 0.000000 0 0 10 122 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_127 igs trnN|trnR trnN-trnR 128240 128873 0 634 IRa 0.006585 20 3 82 300 no 0.750000 14 0.857143 0.006597 0.998423 52.700000 trnR tRNA trnR trnR 128874 128947 -1 74 IRa 0.000000 0 0 9 300 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_128 igs trnR|rrn5S trnR-rrn5S 128948 129190 0 243 IRa 0.000000 0 13 83 123 no 0.062500 5 0.200000 0.000000 1.000000 32.200000 rrn5S rRNA rrn5S rrn5S 129191 129311 -1 121 IRa 0.000000 0 0 300 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_129 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 129312 129558 0 247 IRa 0.005972 6 5 300 300 no 0.250000 6 0.666667 0.005999 1.000000 46.700000 rrn4.5S rRNA rrn4.5S rrn4.5S 129559 129661 -1 103 IRa 0.000000 0 0 117 300 no 0.000000 1 0.000000 0.000000 1.000000 27.500000 IGS_130 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 129662 129759 0 98 IRa 0.000000 0 0 220 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 129760 132569 -1 2810 IRa 0.000205 3 1 300 300 no 0.125000 5 0.400000 0.000205 1.000000 39.900000 IGS_131 igs rrn23S|trnA rrn23S-trnA 132570 132721 0 152 IRa 0.000822 1 0 300 300 no 0.062500 2 0.500000 0.000822 1.000000 36.100000 trnA_part2 tRNA trnA trnA 132722 132756 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 133557 133594 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_134 igs trnA|trnI trnA-trnI 133595 133658 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 133659 133693 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 134644 134680 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_137 igs trnI|rrn16S trnI-rrn16S 134681 134905 0 225 IRa 0.000556 1 2 300 300 no 0.125000 4 0.500000 0.000556 1.000000 38.000000 rrn16S rRNA rrn16S rrn16S 134906 136396 -1 1491 IRa 0.000168 2 0 300 175 no 0.125000 3 0.666667 0.000168 1.000000 40.700000 IGS_138 igs rrn16S|trnV rrn16S-trnV 136397 136627 0 231 IRa 0.003247 3 0 300 167 no 0.125000 4 0.500000 0.003247 1.000000 36.700000 IGS_139 igs trnV|rps12 trnV-rps12 136700 138613 0 1914 IRa 0.005090 40 194 127 300 no 0.875000 15 0.933333 0.005076 0.997388 60.900000 rps12_part2 gene rps12 rps12 138614 139408 1 795 IRa 0.001226 6 0 204 300 no 0.312500 7 0.714286 0.001226 1.000000 47.400000 IGS_140 igs rps12|rps7 rps12-rps7 139409 139461 0 53 IRa 0.000000 0 0 129 300 no 0.000000 1 0.000000 0.000000 1.000000 28.400000 rps7 gene rps7 rps7 139462 139929 1 468 IRa 0.000000 0 0 182 76 no 0.000000 1 0.000000 0.000000 1.000000 27.900000 IGS_141 igs rps7|ndhB rps7-ndhB 139930 140609 0 680 IRa 0.003407 9 7 300 300 no 0.375000 10 0.600000 0.003416 1.000000 51.500000 ndhB gene ndhB ndhB 140610 142464 1 1855 IRa 0.001294 12 6 300 60 no 0.750000 14 0.857143 0.001294 1.000000 44.600000 IGS_142 igs ndhB|trnL ndhB-trnL 142465 143046 0 582 IRa 0.004253 9 28 300 127 no 0.437500 10 0.700000 0.004309 1.000000 52.000000 IGS_143 igs trnL|orf77 trnL-orf77 143128 143676 0 549 IRa 0.002262 9 12 225 64 no 0.500000 10 0.800000 0.002236 1.000000 43.900000 orf77 gene orf77 orf77 143677 143898 -1 222 IRa 0.002815 2 2 300 300 no 0.125000 4 0.500000 0.002818 1.000000 39.600000 IGS_144 igs orf77|ycf2 orf77-ycf2 143899 144034 0 136 IRa 0.001838 2 3 157 300 no 0.125000 3 0.666667 0.001841 1.000000 38.200000 ycf2 gene ycf2 ycf2 144035 150853 -1 6819 IRa 0.002677 98 42 293 300 no 1.000000 16 1.000000 0.002677 0.998240 56.200000 IGS_145 igs ycf2|trnI ycf2-trnI 150854 150941 0 88 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_146 igs trnI|rpl23 trnI-rpl23 151016 151183 0 168 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 151184 151465 1 282 IRa 0.000000 0 5 300 300 no 0.062500 2 0.500000 0.000000 1.000000 37.100000 IGS_147 igs rpl23|rpl2 rpl23-rpl2 151466 151483 0 18 IRa 0.006944 1 0 300 300 no 0.062500 2 0.500000 NA 1.000000 45.000000 rpl2 gene rpl2 rpl2 151484 152990 1 1507 IRa 0.002334 18 7 300 117 no 0.500000 11 0.727273 0.002344 0.995355 46.100000 IGS_148 igs rpl2|trnH rpl2-trnH 152991 3 0 177 IRa 0.006403 6 3 74 83 no 0.500000 10 0.800000 0.006427 1.000000 42.900000