feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 8 81 -1 74 LSC 0.013514 1 0 300 21 no 1.000000 2 1.000000 NA 1.000000 46.800000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 82 527 0 446 LSC 0.022277 9 42 46 300 no 1.000000 2 1.000000 NA 0.905830 60.100000 psbA gene psbA psbA 528 1589 -1 1062 LSC 0.001883 2 0 0 3 no 1.000000 2 1.000000 NA 1.000000 44.800000 IGS_002 igs psbA|trnK-UUU psbA-trnK-UUU 1590 1851 0 262 LSC 0.019084 5 0 119 67 no 1.000000 2 1.000000 NA 1.000000 53.500000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1852 1886 -1 35 LSC 0.000000 0 0 36 32 no 0.000000 1 0.000000 NA 1.000000 21.100000 matK gene matK matK 2211 3710 -1 1500 LSC 0.024000 36 0 42 3 no 1.000000 2 1.000000 NA 1.000000 57.800000 IGS_005 igs matK|trnK-UUU matK-trnK-UUU 3711 4432 0 722 LSC 0.015257 11 1 4 53 no 1.000000 2 1.000000 NA 0.998615 53.000000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4433 4469 -1 37 LSC 0.000000 0 0 164 16 no 0.000000 1 0.000000 NA 1.000000 20.000000 IGS_006 igs trnK-UUU|rps16 trnK-UUU-rps16 4470 5623 0 1154 LSC 0.031542 27 298 201 37 no 1.000000 2 1.000000 NA 0.741768 62.600000 rps16 gene rps16 rps16 5624 6782 -1 1159 LSC 0.017331 20 5 1 95 no 1.000000 2 1.000000 NA 0.995686 54.200000 IGS_007 igs rps16|trnQ-UUG rps16-trnQ-UUG 6783 7937 0 1155 LSC 0.082126 51 534 143 101 no 1.000000 2 1.000000 NA 0.537662 73.600000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 7938 8009 -1 72 LSC 0.000000 0 0 43 29 no 0.000000 1 0.000000 NA 1.000000 20.900000 IGS_008 igs trnQ-UUG|psbK trnQ-UUG-psbK 8010 8676 0 667 LSC 0.071301 40 106 115 198 yes 1.000000 2 1.000000 NA 0.841079 84.200000 psbK gene psbK psbK 8677 8862 1 186 LSC 0.000000 0 0 64 12 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_009 igs psbK|psbI psbK-psbI 8863 9277 0 415 LSC 0.034826 14 13 250 29 no 1.000000 2 1.000000 NA 0.968675 65.000000 psbI gene psbI psbI 9278 9388 1 111 LSC 0.018018 2 0 110 8 no 1.000000 2 1.000000 NA 1.000000 48.500000 IGS_010 igs psbI|trnS-GCU psbI-trnS-GCU 9389 9628 0 240 LSC 0.107692 7 175 29 0 no 1.000000 2 1.000000 NA 0.270833 54.500000 trnS-GCU tRNA trnS-GCU trnS-GCU 9629 9716 -1 88 LSC 0.011364 1 0 10 30 no 1.000000 2 1.000000 NA 1.000000 44.800000 IGS_011 igs trnS-GCU|trnT-CGU trnS-GCU-trnT-CGU 9717 10680 0 964 LSC 0.064516 48 220 87 42 no 1.000000 2 1.000000 NA 0.771784 75.500000 trnT-CGU_part1 tRNA trnT-CGU trnT-CGU 10681 10715 1 35 LSC 0.000000 0 0 53 7 no 0.000000 1 0.000000 NA 1.000000 19.300000 trnT-CGU_part2 tRNA trnT-CGU trnT-CGU 11414 11456 1 43 LSC 0.000000 0 0 69 18 no 0.000000 1 0.000000 NA 1.000000 20.100000 IGS_014 igs trnT-CGU|trnR-UCU trnT-CGU-trnR-UCU 11457 11902 0 446 LSC 0.034913 14 45 112 26 no 1.000000 2 1.000000 NA 0.899103 65.500000 trnR-UCU tRNA trnR-UCU trnR-UCU 11903 11974 1 72 LSC 0.013889 1 0 38 98 no 1.000000 2 1.000000 NA 1.000000 48.300000 IGS_015 igs trnR-UCU|atpA trnR-UCU-atpA 11975 12322 0 348 LSC 0.081818 27 18 45 146 yes 1.000000 2 1.000000 NA 0.948276 78.900000 atpA gene atpA atpA 12323 13855 -1 1533 LSC 0.008480 13 0 4 208 no 1.000000 2 1.000000 NA 1.000000 48.900000 IGS_016 igs atpA|atpF atpA-atpF 13856 13919 0 64 LSC 0.000000 0 0 47 144 no 0.000000 1 0.000000 NA 1.000000 22.300000 atpF gene atpF atpF 13920 15219 -1 1300 LSC 0.009479 12 34 111 64 no 1.000000 2 1.000000 NA 0.973846 56.500000 IGS_017 igs atpF|atpH atpF-atpH 15220 15685 0 466 LSC 0.032895 15 10 91 300 no 1.000000 2 1.000000 NA 0.978541 68.700000 atpH gene atpH atpH 15686 15931 -1 246 LSC 0.000000 0 0 23 224 no 0.000000 1 0.000000 NA 1.000000 20.500000 IGS_018 igs atpH|atpI atpH-atpI 15932 17245 0 1314 LSC 0.020985 26 75 269 300 no 1.000000 2 1.000000 NA 0.942922 75.300000 atpI gene atpI atpI 17246 17989 -1 744 LSC 0.005376 4 0 38 79 no 1.000000 2 1.000000 NA 1.000000 49.700000 IGS_019 igs atpI|rpoC2 atpI-rpoC2 17990 19148 0 1159 LSC 0.010426 12 8 53 61 no 1.000000 2 1.000000 NA 0.993097 54.400000 rpoC2 gene rpoC2 rpoC2 19149 23327 -1 4179 LSC 0.011519 48 12 32 198 no 1.000000 2 1.000000 NA 0.997128 48.100000 IGS_020 igs rpoC2|rpoC1 rpoC2-rpoC1 23328 23501 0 174 LSC 0.000000 0 0 146 24 no 0.000000 1 0.000000 NA 1.000000 20.600000 rpoC1 gene rpoC1 rpoC1 23502 26341 -1 2840 LSC 0.011661 33 10 300 179 no 1.000000 2 1.000000 NA 0.996479 61.400000 IGS_021 igs rpoC1|rpoB rpoC1-rpoB 26342 26367 0 26 LSC 0.000000 0 0 269 153 no 0.000000 1 0.000000 NA 1.000000 30.200000 rpoB gene rpoB rpoB 26368 29580 -1 3213 LSC 0.009648 31 0 295 3 no 1.000000 2 1.000000 NA 1.000000 46.100000 IGS_022 igs rpoB|trnC-GCA rpoB-trnC-GCA 29581 30769 0 1189 LSC 0.038851 46 5 41 82 no 1.000000 2 1.000000 NA 0.995795 69.600000 trnC-GCA tRNA trnC-GCA trnC-GCA 30770 30840 1 71 LSC 0.000000 0 0 23 11 no 0.000000 1 0.000000 NA 1.000000 19.600000 IGS_023 igs trnC-GCA|petN trnC-GCA-petN 30841 31978 0 1138 LSC 0.027778 27 166 94 105 no 1.000000 2 1.000000 NA 0.854130 68.400000 petN gene petN petN 31979 32068 1 90 LSC 0.000000 0 0 247 15 no 0.000000 1 0.000000 NA 1.000000 19.900000 IGS_024 igs petN|psbM petN-psbM 32069 33287 0 1219 LSC 0.025641 31 10 300 17 no 1.000000 2 1.000000 NA 0.991797 60.500000 psbM gene psbM psbM 33288 33392 -1 105 LSC 0.019048 2 0 161 65 no 1.000000 2 1.000000 NA 1.000000 53.300000 IGS_025 igs psbM|trnD-GUC psbM-trnD-GUC 33393 33800 0 408 LSC 0.014706 6 0 86 77 no 1.000000 2 1.000000 NA 1.000000 54.000000 trnD-GUC tRNA trnD-GUC trnD-GUC 33801 33874 -1 74 LSC 0.000000 0 0 0 3 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_026 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 33875 34335 0 461 LSC 0.017354 8 0 74 29 no 1.000000 2 1.000000 NA 1.000000 53.000000 trnY-GUA tRNA trnY-GUA trnY-GUA 34336 34419 -1 84 LSC 0.011905 1 0 137 15 no 1.000000 2 1.000000 NA 1.000000 45.500000 IGS_027 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 34420 34479 0 60 LSC 0.016667 1 0 54 85 no 1.000000 2 1.000000 NA 1.000000 51.100000 trnE-UUC tRNA trnE-UUC trnE-UUC 34480 34552 -1 73 LSC 0.000000 0 0 44 12 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_028 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 34553 35351 0 799 LSC 0.031766 25 12 117 97 no 1.000000 2 1.000000 NA 0.984981 70.700000 trnT-GGU tRNA trnT-GGU trnT-GGU 35352 35423 1 72 LSC 0.000000 0 0 33 25 no 0.000000 1 0.000000 NA 1.000000 20.600000 IGS_029 igs trnT-GGU|psbD trnT-GGU-psbD 35424 36924 0 1501 LSC 0.021074 31 30 105 212 no 1.000000 2 1.000000 NA 0.980013 65.600000 psbD gene psbD psbD 36925 37986 1 1062 LSC 0.002825 3 0 67 186 no 1.000000 2 1.000000 NA 1.000000 50.400000 psbC gene psbC psbC 37934 39355 1 1422 LSC 0.002813 4 0 265 48 no 1.000000 2 1.000000 NA 1.000000 49.000000 IGS_031 igs psbC|trnS-UGA psbC-trnS-UGA 39356 39590 0 235 LSC 0.025532 6 0 213 130 no 1.000000 2 1.000000 NA 1.000000 61.900000 trnS-UGA tRNA trnS-UGA trnS-UGA 39591 39683 -1 93 LSC 0.000000 0 0 12 37 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_032 igs trnS-UGA|psbZ trnS-UGA-psbZ 39684 40038 0 355 LSC 0.033033 11 22 105 264 no 1.000000 2 1.000000 NA 0.938028 69.800000 psbZ gene psbZ psbZ 40039 40227 1 189 LSC 0.000000 0 0 49 75 no 0.000000 1 0.000000 NA 1.000000 22.400000 IGS_033 igs psbZ|trnG-GCC psbZ-trnG-GCC 40228 40630 0 403 LSC 0.057072 23 0 238 83 no 1.000000 2 1.000000 NA 1.000000 75.500000 trnG-GCC tRNA trnG-GCC trnG-GCC 40631 40701 1 71 LSC 0.000000 0 0 106 12 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_034 igs trnG-GCC|trnM-CAU trnG-GCC-trnM-CAU 40702 40891 0 190 LSC 0.070270 13 5 177 152 yes 1.000000 2 1.000000 NA 0.973684 82.500000 trnM-CAU tRNA trnM-CAU trnM-CAU 40892 40965 -1 74 LSC 0.000000 0 0 20 78 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_035 igs trnM-CAU|rps14 trnM-CAU-rps14 40966 41127 0 162 LSC 0.006173 1 0 94 120 no 1.000000 2 1.000000 NA 1.000000 48.100000 rps14 gene rps14 rps14 41128 41430 -1 303 LSC 0.006601 2 0 83 94 no 1.000000 2 1.000000 NA 1.000000 47.600000 IGS_036 igs rps14|psaB rps14-psaB 41431 41548 0 118 LSC 0.008475 1 0 39 63 no 1.000000 2 1.000000 NA 1.000000 45.300000 psaB gene psaB psaB 41549 43753 -1 2205 LSC 0.004535 10 0 23 94 no 1.000000 2 1.000000 NA 1.000000 46.600000 IGS_037 igs psaB|psaA psaB-psaA 43754 43778 0 25 LSC 0.000000 0 0 300 69 no 0.000000 1 0.000000 NA 1.000000 23.900000 psaA gene psaA psaA 43779 46031 -1 2253 LSC 0.008433 19 0 300 67 no 1.000000 2 1.000000 NA 1.000000 52.100000 IGS_038 igs psaA|ycf3 psaA-ycf3 46032 46771 0 740 LSC 0.025210 18 26 45 232 no 1.000000 2 1.000000 NA 0.964865 64.900000 ycf3 gene ycf3 ycf3 46772 48775 -1 2004 LSC 0.009264 18 61 29 74 no 1.000000 2 1.000000 NA 0.969561 53.100000 IGS_039 igs ycf3|trnS-GGA ycf3-trnS-GGA 48776 49036 0 261 LSC 0.026923 7 1 80 164 no 1.000000 2 1.000000 NA 0.996169 59.300000 trnS-GGA tRNA trnS-GGA trnS-GGA 49037 49124 1 88 LSC 0.000000 0 0 0 76 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_040 igs trnS-GGA|rps4 trnS-GGA-rps4 49125 49411 0 287 LSC 0.027875 8 0 88 81 no 1.000000 2 1.000000 NA 1.000000 59.600000 rps4 gene rps4 rps4 49412 50017 -1 606 LSC 0.004950 3 0 24 113 no 1.000000 2 1.000000 NA 1.000000 48.400000 IGS_041 igs rps4|trnT-UGU rps4-trnT-UGU 50018 50380 0 363 LSC 0.014409 5 16 106 95 no 1.000000 2 1.000000 NA 0.955923 58.400000 trnT-UGU tRNA trnT-UGU trnT-UGU 50381 50453 -1 73 LSC 0.000000 0 0 32 22 no 0.000000 1 0.000000 NA 1.000000 20.400000 IGS_042 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 50454 52511 0 2058 LSC 0.051005 66 764 105 145 no 1.000000 2 1.000000 NA 0.628766 72.800000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 52512 52546 1 35 LSC 0.000000 0 0 0 110 no 0.000000 1 0.000000 NA 1.000000 18.800000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 53069 53118 1 50 LSC 0.000000 0 0 112 119 no 0.000000 1 0.000000 NA 1.000000 27.200000 IGS_045 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 53119 53558 0 440 LSC 0.017241 7 34 162 225 no 1.000000 2 1.000000 NA 0.922727 66.400000 trnF-GAA tRNA trnF-GAA trnF-GAA 53559 53631 1 73 LSC 0.000000 0 0 95 152 no 0.000000 1 0.000000 NA 1.000000 25.900000 IGS_046 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 53632 54412 0 781 LSC 0.027464 17 162 168 273 no 1.000000 2 1.000000 NA 0.792574 71.800000 ndhJ gene ndhJ ndhJ 54413 54889 -1 477 LSC 0.006303 3 1 186 17 no 1.000000 2 1.000000 NA 0.997904 46.300000 IGS_047 igs ndhJ|ndhK ndhJ-ndhK 54890 55015 0 126 LSC 0.026786 3 14 39 185 no 1.000000 2 1.000000 NA 0.888889 58.600000 ndhK gene ndhK ndhK 55016 55693 -1 678 LSC 0.005900 4 0 7 18 no 1.000000 2 1.000000 NA 1.000000 47.700000 IGS_048 igs ndhK|ndhC ndhK-ndhC 55694 55736 0 43 LSC 0.046512 2 0 55 300 no 1.000000 2 1.000000 NA 1.000000 68.400000 ndhC gene ndhC ndhC 55737 56099 -1 363 LSC 0.000000 0 0 16 89 no 0.000000 1 0.000000 NA 1.000000 21.300000 IGS_049 igs ndhC|trnM-CAU ndhC-trnM-CAU 56100 58056 0 1957 LSC 0.051883 73 550 300 96 no 1.000000 2 1.000000 NA 0.718958 75.500000 trnM-CAU tRNA trnM-CAU trnM-CAU 58057 58129 1 73 LSC 0.000000 0 0 50 23 no 0.000000 1 0.000000 NA 1.000000 20.500000 IGS_050 igs trnM-CAU|atpE trnM-CAU-atpE 58130 58417 0 288 LSC 0.036101 10 11 123 300 no 1.000000 2 1.000000 NA 0.961806 71.000000 atpE gene atpE atpE 58418 58819 -1 402 LSC 0.000000 0 0 28 91 no 0.000000 1 0.000000 NA 1.000000 23.000000 atpB gene atpB atpB 58816 60312 -1 1497 LSC 0.006012 9 0 300 37 no 1.000000 2 1.000000 NA 1.000000 50.000000 IGS_052 igs atpB|rbcL atpB-rbcL 60313 61074 0 762 LSC 0.017380 13 14 24 83 no 1.000000 2 1.000000 NA 0.981627 57.300000 rbcL gene rbcL rbcL 61075 62502 1 1428 LSC 0.014006 20 0 257 225 no 1.000000 2 1.000000 NA 1.000000 66.800000 IGS_053 igs rbcL|accD rbcL-accD 62503 63901 0 1399 LSC 0.038778 33 548 300 17 no 1.000000 2 1.000000 NA 0.608292 60.700000 accD gene accD accD 63902 65392 1 1491 LSC 0.014785 22 3 14 10 no 1.000000 2 1.000000 NA 0.997988 53.200000 IGS_054 igs accD|psaI accD-psaI 65393 65675 0 283 LSC 0.055777 14 32 20 48 no 1.000000 2 1.000000 NA 0.886926 70.800000 psaI gene psaI psaI 65676 65789 1 114 LSC 0.017544 2 0 18 7 no 1.000000 2 1.000000 NA 1.000000 48.100000 IGS_055 igs psaI|ycf4 psaI-ycf4 65790 65979 0 190 LSC 0.047368 9 0 54 101 no 1.000000 2 1.000000 NA 1.000000 68.800000 ycf4 gene ycf4 ycf4 65980 66534 1 555 LSC 0.014414 8 0 8 50 no 1.000000 2 1.000000 NA 1.000000 51.700000 IGS_056 igs ycf4|cemA ycf4-cemA 66535 66977 0 443 LSC 0.024096 10 28 6 125 no 1.000000 2 1.000000 NA 0.936795 59.100000 cemA gene cemA cemA 66978 67667 1 690 LSC 0.008696 6 0 147 9 no 1.000000 2 1.000000 NA 1.000000 49.400000 IGS_057 igs cemA|petA cemA-petA 67668 67887 0 220 LSC 0.032558 7 5 1 33 no 1.000000 2 1.000000 NA 0.977273 58.400000 petA gene petA petA 67888 68850 1 963 LSC 0.009346 9 0 52 2 no 1.000000 2 1.000000 NA 1.000000 49.300000 IGS_058 igs petA|psbJ petA-psbJ 68851 69714 0 864 LSC 0.035112 25 152 60 65 no 1.000000 2 1.000000 NA 0.824074 69.000000 psbJ gene psbJ psbJ 69715 69837 -1 123 LSC 0.008130 1 0 277 300 no 1.000000 2 1.000000 NA 1.000000 57.200000 IGS_059 igs psbJ|psbF psbJ-psbF 69838 70101 0 264 LSC 0.000000 0 0 57 300 no 0.000000 1 0.000000 NA 1.000000 23.000000 psbF gene psbF psbF 70102 70221 -1 120 LSC 0.000000 0 0 300 246 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_060 igs psbF|psbE psbF-psbE 70222 70230 0 9 LSC 0.000000 0 0 300 237 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 70231 70482 -1 252 LSC 0.003968 1 0 300 265 no 1.000000 2 1.000000 NA 1.000000 54.800000 IGS_061 igs psbE|petL psbE-petL 70483 71808 0 1326 LSC 0.020701 26 70 14 60 no 1.000000 2 1.000000 NA 0.947210 61.300000 petL gene petL petL 71809 71904 1 96 LSC 0.020833 2 0 71 34 no 1.000000 2 1.000000 NA 1.000000 52.000000 IGS_062 igs petL|petG petL-petG 71905 72081 0 177 LSC 0.022599 4 0 18 144 no 1.000000 2 1.000000 NA 1.000000 51.800000 petG gene petG petG 72082 72195 1 114 LSC 0.000000 0 0 51 30 no 0.000000 1 0.000000 NA 1.000000 21.000000 IGS_063 igs petG|trnW-CCA petG-trnW-CCA 72196 72327 0 132 LSC 0.008333 1 12 165 77 no 1.000000 2 1.000000 NA 0.909091 51.700000 trnW-CCA tRNA trnW-CCA trnW-CCA 72328 72401 -1 74 LSC 0.000000 0 0 101 3 no 0.000000 1 0.000000 NA 1.000000 19.000000 IGS_064 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 72402 72616 0 215 LSC 0.041860 9 0 175 135 no 1.000000 2 1.000000 NA 1.000000 71.700000 trnP-UGG tRNA trnP-UGG trnP-UGG 72617 72690 -1 74 LSC 0.000000 0 0 8 61 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_065 igs trnP-UGG|psaJ trnP-UGG-psaJ 72691 73179 0 489 LSC 0.017157 7 81 82 26 no 1.000000 2 1.000000 NA 0.834356 54.500000 psaJ gene psaJ psaJ 73180 73314 1 135 LSC 0.022222 3 0 62 27 no 1.000000 2 1.000000 NA 1.000000 52.300000 IGS_066 igs psaJ|rpl33 psaJ-rpl33 73315 73812 0 498 LSC 0.020576 10 12 15 11 no 1.000000 2 1.000000 NA 0.975904 56.600000 rpl33 gene rpl33 rpl33 73813 74013 1 201 LSC 0.009950 2 0 11 1 no 1.000000 2 1.000000 NA 1.000000 43.300000 IGS_067 igs rpl33|rps18 rpl33-rps18 74014 74260 0 247 LSC 0.126697 28 26 138 161 yes 1.000000 2 1.000000 NA 0.894737 86.100000 rps18 gene rps18 rps18 74261 74566 1 306 LSC 0.003268 1 0 34 106 no 1.000000 2 1.000000 NA 1.000000 42.100000 IGS_068 igs rps18|rpl20 rps18-rpl20 74567 74812 0 246 LSC 0.004065 1 0 144 12 no 1.000000 2 1.000000 NA 1.000000 40.700000 rpl20 gene rpl20 rpl20 74813 75172 -1 360 LSC 0.027778 10 0 139 51 no 1.000000 2 1.000000 NA 1.000000 58.500000 IGS_069 igs rpl20|rps12 rpl20-rps12 75173 75978 0 806 LSC 0.019182 15 24 216 122 no 1.000000 2 1.000000 NA 0.970223 66.700000 rps12_part1 gene rps12 rps12 75979 76092 -1 114 LSC 0.000000 0 0 43 8 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_070 igs rps12|clpP rps12-clpP 76093 76260 0 168 LSC 0.047619 8 0 157 141 no 1.000000 2 1.000000 NA 1.000000 75.500000 clpP gene clpP clpP 76261 78204 -1 1944 LSC 0.011880 23 8 7 169 no 1.000000 2 1.000000 NA 0.995885 50.600000 IGS_071 igs clpP|psbB clpP-psbB 78205 78672 0 468 LSC 0.012821 6 0 47 215 no 1.000000 2 1.000000 NA 1.000000 51.900000 psbB gene psbB psbB 78673 80199 1 1527 LSC 0.006549 10 0 116 252 no 1.000000 2 1.000000 NA 1.000000 56.200000 IGS_072 igs psbB|psbT psbB-psbT 80200 80377 0 178 LSC 0.000000 0 0 35 74 no 0.000000 1 0.000000 NA 1.000000 21.400000 psbT gene psbT psbT 80378 80485 1 108 LSC 0.009259 1 0 213 282 no 1.000000 2 1.000000 NA 1.000000 57.800000 IGS_073 igs psbT|psbN psbT-psbN 80486 80545 0 60 LSC 0.000000 0 0 33 222 no 0.000000 1 0.000000 NA 1.000000 21.200000 psbN gene psbN psbN 80546 80677 -1 132 LSC 0.000000 0 0 93 90 no 0.000000 1 0.000000 NA 1.000000 25.500000 IGS_074 igs psbN|psbH psbN-psbH 80678 80782 0 105 LSC 0.009615 1 1 225 237 no 1.000000 2 1.000000 NA 0.990476 58.900000 psbH gene psbH psbH 80783 81004 1 222 LSC 0.000000 0 0 14 15 no 0.000000 1 0.000000 NA 1.000000 19.800000 IGS_075 igs psbH|petB psbH-petB 81005 81131 0 127 LSC 0.023622 3 0 236 161 no 1.000000 2 1.000000 NA 1.000000 63.200000 petB gene petB petB 81132 82585 1 1454 LSC 0.012048 17 43 64 22 no 1.000000 2 1.000000 NA 0.970426 55.100000 IGS_076 igs petB|rpoA petB-rpoA 82586 84172 0 1587 LSC 0.021560 34 10 274 12 no 1.000000 2 1.000000 NA 0.993699 57.500000 rpoA gene rpoA rpoA 84173 85168 -1 996 LSC 0.013052 13 0 21 25 no 1.000000 2 1.000000 NA 1.000000 52.800000 IGS_077 igs rpoA|rps11 rpoA-rps11 85169 85239 0 71 LSC 0.042254 3 0 287 18 no 1.000000 2 1.000000 NA 1.000000 63.100000 rps11 gene rps11 rps11 85240 85656 -1 417 LSC 0.007194 3 0 9 0 no 1.000000 2 1.000000 NA 1.000000 44.100000 IGS_078 igs rps11|rpl36 rps11-rpl36 85657 87130 0 1474 LSC 0.067194 17 1221 278 22 no 1.000000 2 1.000000 NA 0.171642 59.000000 rpl36 gene rpl36 rpl36 87131 87244 -1 114 LSC 0.008772 1 0 44 4 no 1.000000 2 1.000000 NA 1.000000 42.800000 IGS_079 igs rpl36|infA rpl36-infA 87245 87363 0 119 LSC 0.050847 6 1 91 25 no 1.000000 2 1.000000 NA 0.991597 69.000000 infA gene infA infA 87364 87540 -1 177 LSC 0.022599 4 0 28 46 no 1.000000 2 1.000000 NA 1.000000 52.600000 IGS_080 igs infA|rps8 infA-rps8 87541 87725 0 185 LSC 0.037838 7 0 63 83 no 1.000000 2 1.000000 NA 1.000000 64.000000 rps8 gene rps8 rps8 87726 88130 -1 405 LSC 0.014815 6 0 1 58 no 1.000000 2 1.000000 NA 1.000000 48.300000 IGS_081 igs rps8|rpl14 rps8-rpl14 88131 88669 0 539 LSC 0.023474 5 326 191 45 no 1.000000 2 1.000000 NA 0.395176 50.000000 rpl14 gene rpl14 rpl14 88670 89038 -1 369 LSC 0.010840 4 0 36 89 no 1.000000 2 1.000000 NA 1.000000 47.900000 IGS_082 igs rpl14|rpl16 rpl14-rpl16 89039 89183 0 145 LSC 0.006944 1 1 18 39 no 1.000000 2 1.000000 NA 0.993103 43.500000 rpl16 gene rpl16 rpl16 89184 90702 -1 1519 LSC 0.023129 34 49 55 29 no 1.000000 2 1.000000 NA 0.967742 62.200000 IGS_083 igs rpl16|rps3 rpl16-rps3 90703 90860 0 158 LSC 0.031646 5 0 22 4 no 1.000000 2 1.000000 NA 1.000000 56.000000 rps3 gene rps3 rps3 90861 91517 -1 657 LSC 0.015221 10 0 0 33 no 1.000000 2 1.000000 NA 1.000000 52.500000 IGS_084 igs rps3|rps19 rps3-rps19 91518 92174 0 657 LSC 0.050761 30 66 23 36 no 1.000000 2 1.000000 NA 0.899543 77.100000 rps19 gene rps19 rps19 92175 92453 -1 279 LSC 0.007168 2 0 41 300 no 1.000000 2 1.000000 NA 1.000000 44.700000 IGS_085 igs rps19|rpl2 rps19-rpl2 92454 92540 0 87 IRb 0.000000 0 25 137 243 no 1.000000 2 1.000000 NA 0.712644 45.900000 rpl2 gene rpl2 rpl2 92541 94030 -1 1490 IRb 0.002685 4 0 224 300 no 1.000000 2 1.000000 NA 1.000000 60.300000 IGS_086 igs rpl2|rpl23 rpl2-rpl23 94031 94048 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 94049 94330 -1 282 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_087 igs rpl23|trnM-CAU rpl23-trnM-CAU 94331 94495 0 165 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnM-CAU tRNA trnM-CAU trnM-CAU 94496 94569 -1 74 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_088 igs trnM-CAU|ycf2 trnM-CAU-ycf2 94570 94657 0 88 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 ycf2 gene ycf2 ycf2 94658 101485 1 6828 IRb 0.001763 12 21 300 110 no 1.000000 2 1.000000 NA 0.996924 47.100000 IGS_089 igs ycf2|trnL-CAA ycf2-trnL-CAA 101486 102460 0 975 IRb 0.003151 3 23 210 235 no 1.000000 2 1.000000 NA 0.976410 62.800000 trnL-CAA tRNA trnL-CAA trnL-CAA 102461 102541 -1 81 IRb 0.000000 0 0 300 154 no 0.000000 1 0.000000 NA 1.000000 30.300000 IGS_090 igs trnL-CAA|ndhB trnL-CAA-ndhB 102542 103112 0 571 IRb 0.005254 3 0 300 164 no 1.000000 2 1.000000 NA 1.000000 58.500000 ndhB gene ndhB ndhB 103113 105330 -1 2218 IRb 0.002254 5 0 300 300 no 1.000000 2 1.000000 NA 1.000000 58.600000 IGS_091 igs ndhB|rps7 ndhB-rps7 105331 105649 0 319 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 34.100000 rps7 gene rps7 rps7 105650 106117 -1 468 IRb 0.002137 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 57.200000 IGS_092 igs rps7|rps12 rps7-rps12 106118 106170 0 53 IRb 0.000000 0 0 126 300 no 0.000000 1 0.000000 NA 1.000000 28.200000 rps12_part2 gene rps12 rps12 106171 106969 -1 799 IRb 0.000000 0 5 179 152 no 1.000000 2 1.000000 NA 0.993742 55.800000 IGS_093 igs rps12|trnV-GAC rps12-trnV-GAC 106970 108860 0 1891 IRb 0.007357 12 260 300 300 no 1.000000 2 1.000000 NA 0.862507 64.400000 trnV-GAC tRNA trnV-GAC trnV-GAC 108861 108932 1 72 IRb 0.000000 0 0 181 300 no 0.000000 1 0.000000 NA 1.000000 32.300000 IGS_094 igs trnV-GAC|rrn16S trnV-GAC-rrn16S 108933 109166 0 234 IRb 0.000000 0 0 253 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 109167 110657 1 1491 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 40.000000 IGS_095 igs rrn16S|trnI rrn16S-trnI 110658 110953 0 296 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI_part1 tRNA trnI trnI 110954 110985 1 32 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI_part2 tRNA trnI trnI 111943 111982 1 40 IRb 0.000000 0 0 172 20 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_098 igs trnI|trnA-UGC trnI-trnA-UGC 111983 112046 0 64 IRb 0.031250 2 0 212 300 no 1.000000 2 1.000000 NA 1.000000 70.500000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 112047 112083 1 37 IRb 0.000000 0 0 11 300 no 0.000000 1 0.000000 NA 1.000000 19.600000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 112874 112909 1 36 IRb 0.000000 0 0 300 66 no 0.000000 1 0.000000 NA 1.000000 23.700000 IGS_101 igs trnA-UGC|rrn23S trnA-UGC-rrn23S 112910 113066 0 157 IRb 0.006369 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 56.200000 rrn23S rRNA rrn23S rrn23S 113067 115876 1 2810 IRb 0.000712 2 0 90 293 no 1.000000 2 1.000000 NA 1.000000 48.200000 IGS_102 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 115877 115974 0 98 IRb 0.000000 0 0 300 195 no 0.000000 1 0.000000 NA 1.000000 33.400000 rrn4.5S rRNA rrn4.5S rrn4.5S 115975 116078 1 104 IRb 0.000000 0 0 300 91 no 0.000000 1 0.000000 NA 1.000000 25.600000 IGS_103 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 116079 116302 0 224 IRb 0.004464 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 55.100000 rrn5S rRNA rrn5S rrn5S 116303 116423 1 121 IRb 0.000000 0 0 132 300 no 0.000000 1 0.000000 NA 1.000000 28.600000 IGS_104 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 116424 116676 0 253 IRb 0.000000 0 0 253 232 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 116677 116750 1 74 IRb 0.000000 0 0 300 158 no 0.000000 1 0.000000 NA 1.000000 30.600000 IGS_105 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 116751 117377 0 627 IRb 0.022838 14 14 300 244 no 1.000000 2 1.000000 NA 0.977671 74.000000 trnN-GUU tRNA trnN-GUU trnN-GUU 117378 117449 -1 72 IRb 0.000000 0 0 19 172 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_106 igs trnN-GUU|ycf1 trnN-GUU-ycf1 117450 117804 0 355 IRb 0.009146 3 27 91 8 no 1.000000 2 1.000000 NA 0.923944 48.500000 ycf1 gene ycf1 ycf1 117805 123288 1 5484 SSC 0.389602 1911 579 57 2 yes 1.000000 2 1.000000 NA 0.894420 75.900000 IGS_107 igs ycf1|rps15 ycf1-rps15 123289 123660 0 372 SSC 0.458716 150 45 0 1 no 1.000000 2 1.000000 NA 0.879032 76.800000 rps15 gene rps15 rps15 123661 123933 1 273 SSC 0.442149 107 31 3 16 no 1.000000 2 1.000000 NA 0.886447 75.800000 IGS_108 igs rps15|ndhH rps15-ndhH 123934 124036 0 103 SSC 0.441860 38 17 0 0 no 1.000000 2 1.000000 NA 0.834951 74.100000 ndhH gene ndhH ndhH 124037 125218 1 1182 SSC 0.458128 372 370 0 8 yes 1.000000 2 1.000000 NA 0.686971 76.200000 IGS_109 igs ndhH|ndhA ndhH-ndhA 125219 125219 0 1 SSC NA 0 1 11 7 no 1.000000 2 1.000000 NA 0.000000 25.500000 ndhA gene ndhA ndhA 125220 127699 1 2480 SSC 0.449322 696 931 12 18 yes 1.000000 2 1.000000 NA 0.624597 73.300000 IGS_110 igs ndhA|ndhI ndhA-ndhI 127700 127778 0 79 SSC 0.540984 33 18 43 49 no 1.000000 2 1.000000 NA 0.772152 75.600000 ndhI gene ndhI ndhI 127779 128264 1 486 SSC 0.398058 82 280 0 2 no 1.000000 2 1.000000 NA 0.423868 69.200000 IGS_111 igs ndhI|ndhG ndhI-ndhG 128265 129175 0 911 SSC 0.353508 257 184 0 0 yes 1.000000 2 1.000000 NA 0.798024 79.300000 ndhG gene ndhG ndhG 129176 129706 1 531 SSC 0.456332 209 73 2 1 yes 1.000000 2 1.000000 NA 0.862524 79.800000 IGS_112 igs ndhG|ndhE ndhG-ndhE 129707 129954 0 248 SSC 0.434783 60 110 0 9 yes 1.000000 2 1.000000 NA 0.556452 67.000000 ndhE gene ndhE ndhE 129955 130260 1 306 SSC 0.486957 112 76 26 0 no 1.000000 2 1.000000 NA 0.751634 71.900000 IGS_113 igs ndhE|psaC ndhE-psaC 130261 130533 0 273 SSC 0.453184 121 6 0 21 no 1.000000 2 1.000000 NA 0.978022 74.600000 psaC gene psaC psaC 130534 130779 1 246 SSC 0.445860 70 89 3 0 no 1.000000 2 1.000000 NA 0.638211 68.600000 IGS_114 igs psaC|ndhD psaC-ndhD 130780 130906 0 127 SSC 0.381818 42 17 1 4 no 1.000000 2 1.000000 NA 0.866142 75.100000 ndhD gene ndhD ndhD 130907 132400 1 1494 SSC 0.487701 575 315 0 6 yes 1.000000 2 1.000000 NA 0.789157 79.100000 IGS_115 igs ndhD|ccsA ndhD-ccsA 132401 132676 0 276 SSC 0.543624 81 127 10 1 yes 1.000000 2 1.000000 NA 0.539855 66.800000 ccsA gene ccsA ccsA 132677 133648 -1 972 SSC 0.462145 293 338 0 2 yes 1.000000 2 1.000000 NA 0.652263 75.200000 IGS_116 igs ccsA|trnL-UAG ccsA-trnL-UAG 133649 133749 0 101 SSC 0.500000 43 15 1 21 no 1.000000 2 1.000000 NA 0.851485 74.600000 trnL-UAG tRNA trnL-UAG trnL-UAG 133750 133829 -1 80 SSC 0.534884 23 37 17 5 no 1.000000 2 1.000000 NA 0.537500 67.100000 IGS_117 igs trnL-UAG|rpl32 trnL-UAG-rpl32 133830 134885 0 1056 SSC 0.422319 386 142 0 34 yes 1.000000 2 1.000000 NA 0.865530 81.200000 rpl32 gene rpl32 rpl32 134886 135053 -1 168 SSC 0.364865 27 94 8 1 no 1.000000 2 1.000000 NA 0.440476 65.600000 IGS_118 igs rpl32|ndhF rpl32-ndhF 135054 136068 0 1015 SSC 0.429724 373 147 1 0 yes 1.000000 2 1.000000 NA 0.855172 80.900000 ndhF gene ndhF ndhF 136069 138306 1 2238 SSC 0.462225 881 332 0 3 yes 1.000000 2 1.000000 NA 0.851653 79.300000 IGS_119 igs ndhF|trnN-GUU ndhF-trnN-GUU 138307 140222 0 1916 IRa 0.173866 318 87 3 91 yes 1.000000 2 1.000000 NA 0.954593 82.500000 trnN-GUU tRNA trnN-GUU trnN-GUU 140223 140294 1 72 IRa 0.000000 0 0 172 19 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_120 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 140295 140921 0 627 IRa 0.022838 14 14 244 300 no 1.000000 2 1.000000 NA 0.977671 74.000000 trnR-ACG tRNA trnR-ACG trnR-ACG 140922 140995 -1 74 IRa 0.000000 0 0 158 300 no 0.000000 1 0.000000 NA 1.000000 30.600000 IGS_121 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 140996 141248 0 253 IRa 0.000000 0 0 232 253 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 141249 141369 -1 121 IRa 0.000000 0 0 300 132 no 0.000000 1 0.000000 NA 1.000000 28.600000 IGS_122 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 141370 141593 0 224 IRa 0.004464 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 55.100000 rrn4.5S rRNA rrn4.5S rrn4.5S 141594 141697 -1 104 IRa 0.000000 0 0 91 300 no 0.000000 1 0.000000 NA 1.000000 25.600000 IGS_123 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 141698 141795 0 98 IRa 0.000000 0 0 195 300 no 0.000000 1 0.000000 NA 1.000000 33.400000 rrn23S rRNA rrn23S rrn23S 141796 144605 -1 2810 IRa 0.000712 2 0 293 90 no 1.000000 2 1.000000 NA 1.000000 48.200000 IGS_124 igs rrn23S|trnA-UGC rrn23S-trnA-UGC 144606 144762 0 157 IRa 0.006369 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 56.200000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 144763 144798 -1 36 IRa 0.000000 0 0 66 300 no 0.000000 1 0.000000 NA 1.000000 23.700000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 145589 145625 -1 37 IRa 0.000000 0 0 300 11 no 0.000000 1 0.000000 NA 1.000000 19.600000 IGS_127 igs trnA-UGC|trnI trnA-UGC-trnI 145626 145689 0 64 IRa 0.031250 2 0 300 212 no 1.000000 2 1.000000 NA 1.000000 70.500000 trnI_part2 tRNA trnI trnI 145690 145729 -1 40 IRa 0.000000 0 0 20 172 no 0.000000 1 0.000000 NA 1.000000 20.200000 trnI_part1 tRNA trnI trnI 146687 146718 -1 32 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_130 igs trnI|rrn16S trnI-rrn16S 146719 147014 0 296 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 147015 148505 -1 1491 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 40.000000 IGS_131 igs rrn16S|trnV-GAC rrn16S-trnV-GAC 148506 148739 0 234 IRa 0.000000 0 0 300 253 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnV-GAC tRNA trnV-GAC trnV-GAC 148740 148811 -1 72 IRa 0.000000 0 0 300 181 no 0.000000 1 0.000000 NA 1.000000 32.300000 IGS_132 igs trnV-GAC|rps12 trnV-GAC-rps12 148812 150702 0 1891 IRa 0.007357 12 260 300 300 no 1.000000 2 1.000000 NA 0.862507 64.400000 rps12_part2 gene rps12 rps12 150703 151501 1 799 IRa 0.000000 0 5 152 179 no 1.000000 2 1.000000 NA 0.993742 55.800000 IGS_133 igs rps12|rps7 rps12-rps7 151502 151554 0 53 IRa 0.000000 0 0 300 126 no 0.000000 1 0.000000 NA 1.000000 28.200000 rps7 gene rps7 rps7 151555 152022 1 468 IRa 0.002137 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 57.200000 IGS_134 igs rps7|ndhB rps7-ndhB 152023 152341 0 319 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 34.100000 ndhB gene ndhB ndhB 152342 154559 1 2218 IRa 0.002254 5 0 300 300 no 1.000000 2 1.000000 NA 1.000000 58.600000 IGS_135 igs ndhB|trnL-CAA ndhB-trnL-CAA 154560 155130 0 571 IRa 0.005254 3 0 164 300 no 1.000000 2 1.000000 NA 1.000000 58.500000 trnL-CAA tRNA trnL-CAA trnL-CAA 155131 155211 1 81 IRa 0.000000 0 0 154 300 no 0.000000 1 0.000000 NA 1.000000 30.300000 IGS_136 igs trnL-CAA|ycf2 trnL-CAA-ycf2 155212 156186 0 975 IRa 0.003151 3 23 235 210 no 1.000000 2 1.000000 NA 0.976410 62.800000 ycf2 gene ycf2 ycf2 156187 163014 -1 6828 IRa 0.001763 12 21 110 300 no 1.000000 2 1.000000 NA 0.996924 47.100000 IGS_137 igs ycf2|trnM-CAU ycf2-trnM-CAU 163015 163102 0 88 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnM-CAU tRNA trnM-CAU trnM-CAU 163103 163176 1 74 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_138 igs trnM-CAU|rpl23 trnM-CAU-rpl23 163177 163341 0 165 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 163342 163623 1 282 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_139 igs rpl23|rpl2 rpl23-rpl2 163624 163641 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 163642 165131 1 1490 IRa 0.002685 4 0 300 218 no 1.000000 2 1.000000 NA 1.000000 60.300000 IGS_140 igs rpl2|trnH-GUG rpl2-trnH-GUG 165132 7 0 191 IRa 0.000000 0 25 243 27 no 1.000000 2 1.000000 NA 0.869110 42.100000