primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score ycf80-trnR-CCG_p1 ycf80-trnR-CCG 1 AAATGTCTGTGTGGCTGTGT CGGTCGAAGGTTCAAATCCT 20 20 45.0 50.0 57.9 57.9 0.0 0.0 0.151900 7066 8032 1204-1204 0.333333 52.1 ycf80-trnR-CCG_p2 ycf80-trnR-CCG 2 AAATGTCTGTGTGGCTGTGT TTGGGCATGTAACTCAGTGG 20 20 45.0 50.0 57.9 57.8 0.0 0.0 0.255964 7066 8032 1249-1249 0.333333 51.3 ycf80-trnR-CCG_p3 ycf80-trnR-CCG 3 AAATGTCTGTGTGGCTGTGT AGTTCGTTCATTGCAGGAGT 20 20 45.0 45.0 57.9 57.4 0.0 0.0 0.607968 7066 8032 1900-1900 0.333333 48.5 ycf80-trnR-CCG_p4 ycf80-trnR-CCG 4 AAATGTCTGTGTGGCTGTGT TGGGCATGTAACTCAGTGGA 20 20 45.0 50.0 57.9 58.6 0.0 0.0 0.700000 7066 8032 1248-1248 0.333333 47.7 ycf80-trnR-CCG_p5 ycf80-trnR-CCG 5 AAATGTCTGTGTGGCTGTGT GGGCATGTAACTCAGTGGAT 20 20 45.0 50.0 57.9 57.3 0.0 0.0 0.774776 7066 8032 1247-1247 0.333333 47.1 cpeA-ccsA_p1 cpeA-ccsA 1 CGGCGGAAAAACTAGCTAGT AATGGACGGCAGTTAATCCC 20 20 50.0 50.0 58.0 57.9 21.0 0.0 0.058753 12451 13020 1206-1206 0.333333 52.9 cpeA-ccsA_p2 cpeA-ccsA 2 CGGCGGAAAAACTAGCTAGT CCCATACAGCTCCAGCAATT 20 20 50.0 50.0 58.0 57.9 21.0 0.5 0.068941 12451 13020 1671-1671 0.333333 52.8 cpeA-ccsA_p3 cpeA-ccsA 3 GCGCCTAATCAACTACTGCT AATGGACGGCAGTTAATCCC 20 20 50.0 50.0 58.1 57.9 0.0 0.0 0.111457 12451 13020 1055-1055 0.333333 52.4 cpeA-ccsA_p4 cpeA-ccsA 4 GCGATAGAGTTTCTGCTGCT AATGGACGGCAGTTAATCCC 20 20 50.0 50.0 58.1 57.9 0.0 0.0 0.119536 12451 13020 1470-1470 0.333333 52.4 cpeA-ccsA_p5 cpeA-ccsA 5 GCGCCTAATCAACTACTGCT CCCATACAGCTCCAGCAATT 20 20 50.0 50.0 58.1 57.9 0.0 0.5 0.121646 12451 13020 1520-1520 0.333333 52.4 ycf22-psaC_p1 ycf22-psaC 1 AAACGGGGATCATCAAGACG CCCTCAGAGGATAAAACGGC 20 20 50.0 55.0 58.0 58.0 0.0 19.2 0.069249 16256 16980 1561-1561 0.333333 52.8 ycf22-psaC_p2 ycf22-psaC 2 AAACGGGGATCATCAAGACG GGACGTAACATAGGTGCAGG 20 20 50.0 55.0 58.0 58.1 0.0 0.0 0.088243 16256 16980 1801-1801 0.333333 52.6 ycf22-psaC_p3 ycf22-psaC 3 AAACGGGGATCATCAAGACG GGTCAAGCAGGACGTAACAT 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.118938 16256 16980 1810-1810 0.333333 52.4 ycf22-psaC_p4 ycf22-psaC 4 AAACGGGGATCATCAAGACG TGGAACGGATGTAAAGCTGG 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.132126 16256 16980 1219-1219 0.333333 52.3 ycf22-psaC_p5 ycf22-psaC 5 AAACGGGGATCATCAAGACG GGAACGGATGTAAAGCTGGT 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.133600 16256 16980 1218-1218 0.333333 52.3 trnN-GUU-trnL-UAG_p1 trnN-GUU-trnL-UAG 1 CTACCACTGAGCTACTGAGGA AGCGTGTCTACCAATTCCAC 21 20 52.4 50.0 58.0 57.9 11.2 0.0 1.100874 43456 43627 213-222 1.000000 82.5 trnN-GUU-trnL-UAG_p2 trnN-GUU-trnL-UAG 2 TCTACCACTGAGCTACTGAGG AGCGTGTCTACCAATTCCAC 21 20 52.4 50.0 58.0 57.9 0.0 0.0 1.100874 43456 43627 214-223 1.000000 82.5 trnN-GUU-trnL-UAG_p3 trnN-GUU-trnL-UAG 3 CTACCACTGAGCTACTGAGGA CTACCAATTCCACCACGTCC 21 20 52.4 55.0 58.0 58.3 11.2 0.0 1.271949 43456 43627 206-215 1.000000 81.3 trnN-GUU-trnL-UAG_p4 trnN-GUU-trnL-UAG 4 TCTACCACTGAGCTACTGAGG CTACCAATTCCACCACGTCC 21 20 52.4 55.0 58.0 58.3 0.0 0.0 1.271949 43456 43627 207-216 1.000000 81.3 trnN-GUU-trnL-UAG_p5 trnN-GUU-trnL-UAG 5 ACCAATCGGTTAACAGCCG AGCGTGTCTACCAATTCCAC 19 20 52.6 50.0 58.2 57.9 8.1 0.0 1.245681 43456 43627 238-247 1.000000 81.0 ycf53_p1 ycf53 1 AAATTCATTGACCAGCCCGA GGTCCAGGAGATCCATCTGT 20 20 45.0 55.0 57.8 58.2 0.0 0.9 0.414443 52005 52724 1882-1883 1.000000 84.7 ycf53_p2 ycf53 2 AATTCATTGACCAGCCCGAA GGTCCAGGAGATCCATCTGT 20 20 45.0 55.0 57.8 58.2 0.0 0.9 0.414443 52005 52724 1881-1882 1.000000 84.7 ycf53_p3 ycf53 3 AATTCATTGACCAGCCCGAA TGGTCCAGGAGATCCATCTG 20 20 45.0 55.0 57.8 58.2 0.0 0.9 0.415750 52005 52724 1882-1883 1.000000 84.7 ycf53_p4 ycf53 4 TCCAAGTCGGCAATTCAGTC GGTCCAGGAGATCCATCTGT 20 20 50.0 55.0 58.2 58.2 0.0 0.9 0.391656 52005 52724 1698-1698 0.333333 50.2 ycf53_p5 ycf53 5 TCCAAGTCGGCAATTCAGTC TGGTCCAGGAGATCCATCTG 20 20 50.0 55.0 58.2 58.2 0.0 0.9 0.392963 52005 52724 1699-1699 0.333333 50.2 rrn16-ompR_p1 rrn16-ompR 1 CATTGCGGAAAATTCCCCAC TGCTCCTAGTTCTAGTCCGG 20 20 50.0 55.0 58.0 57.9 6.6 0.0 0.062984 67365 69148 2344-2344 0.333333 52.8 rrn16-ompR_p2 rrn16-ompR 2 CATTGCGGAAAATTCCCCAC GCTCCTAGTTCTAGTCCGGT 20 20 50.0 55.0 58.0 57.9 6.6 0.0 0.064436 67365 69148 2343-2343 0.333333 52.8 rrn16-ompR_p3 rrn16-ompR 3 AGCTACTGATCGTTGCCTTG TGCTCCTAGTTCTAGTCCGG 20 20 50.0 55.0 58.0 57.9 15.8 0.0 0.069968 67365 69148 2259-2259 0.333333 52.8 rrn16-ompR_p4 rrn16-ompR 4 CAGCTACTGATCGTTGCCTT TGCTCCTAGTTCTAGTCCGG 20 20 50.0 55.0 58.0 57.9 15.8 0.0 0.069968 67365 69148 2260-2260 0.333333 52.8 rrn16-ompR_p5 rrn16-ompR 5 AGCTACTGATCGTTGCCTTG GCTCCTAGTTCTAGTCCGGT 20 20 50.0 55.0 58.0 57.9 15.8 0.0 0.071420 67365 69148 2258-2258 0.333333 52.8 ompR-psbD_p1 ompR-psbD 1 CTCAATAGGAAGAGGCTTGCA TGCTTGCCATGAATACAGCT 21 20 47.6 45.0 57.7 57.9 0.0 0.0 1.405855 70864 71113 1344-1344 0.333333 42.1 ompR-psbD_p2 ompR-psbD 2 CACTGTACCTATCATTCGCGA TGCTTGCCATGAATACAGCT 21 20 47.6 45.0 57.7 57.9 3.7 0.0 1.482770 70864 71113 813-813 0.333333 41.5 ompR-psbD_p3 ompR-psbD 3 TCACTGTACCTATCATTCGCG TGCTTGCCATGAATACAGCT 21 20 47.6 45.0 57.7 57.9 0.0 0.0 1.482770 70864 71113 814-814 0.333333 41.5 ompR-psbD_p4 ompR-psbD 4 CTCAATAGGAAGAGGCTTGCA CCGCTCATCCGGTATTTCTC 21 20 47.6 55.0 57.7 58.2 0.0 0.0 1.488049 70864 71113 1160-1160 0.333333 41.4 ompR-psbD_p5 ompR-psbD 5 CACTGTACCTATCATTCGCGA CCGCTCATCCGGTATTTCTC 21 20 47.6 55.0 57.7 58.2 3.7 0.0 1.564963 70864 71113 629-629 0.333333 40.8 syh_p1 syh 1 TCCTTGCCCGATCACAAAAA ATACTGGGGTGGGAGGATTC 20 20 45.0 55.0 58.0 58.2 0.0 0.0 0.190619 80146 81402 1461-1461 0.333333 51.8 syh_p2 syh 2 TCCTTGCCCGATCACAAAAA TGGCTACACCCCAATAGCTA 20 20 45.0 50.0 58.0 57.8 0.0 0.0 0.195795 80146 81402 1399-1399 0.333333 51.8 syh_p3 syh 3 TCCTTGCCCGATCACAAAAA CTTGGCTACACCCCAATAGC 20 20 45.0 55.0 58.0 58.3 0.0 0.0 0.331369 80146 81402 1401-1401 0.333333 50.7 syh_p4 syh 4 TCCTTGCCCGATCACAAAAA GCTTGGCTACACCCCAATAG 20 20 45.0 55.0 58.0 58.3 0.0 0.0 0.331369 80146 81402 1402-1402 0.333333 50.7 syh_p5 syh 5 TGCCATTGGATTAGCACCAG ATACTGGGGTGGGAGGATTC 20 20 50.0 55.0 58.2 58.2 6.9 0.0 0.412418 80146 81402 2031-2031 0.333333 50.0 rpl11-trnW-CCA_p1 rpl11-trnW-CCA 1 GCGAGCTGTTCCAGATACAA TGCAGAAGACGCTAATCCAC 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.020290 90426 91766 2058-2834 0.666667 78.5 rpl11-trnW-CCA_p2 rpl11-trnW-CCA 2 GCGAGCTGTTCCAGATACAA GATGTCGAGGGTTCAAGTCC 20 20 50.0 55.0 58.0 58.0 0.0 0.0 0.021685 90426 91766 1771-2560 0.666667 78.5 rpl11-trnW-CCA_p3 rpl11-trnW-CCA 3 AGGCTGTCCTGAACCTTTTG TGCAGAAGACGCTAATCCAC 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.023263 90426 91766 1935-1935 0.333333 53.1 rpl11-trnW-CCA_p4 rpl11-trnW-CCA 4 AGGCTGTCCTGAACCTTTTG GATGTCGAGGGTTCAAGTCC 20 20 50.0 55.0 58.0 58.0 0.0 0.0 0.024658 90426 91766 1648-1648 0.333333 53.1 rpl11-trnW-CCA_p5 rpl11-trnW-CCA 5 CGTGTTAAGATCCTGCAGCT TGCAGAAGACGCTAATCCAC 20 20 50.0 50.0 58.0 58.0 8.7 0.0 0.025881 90426 91766 2013-2013 0.333333 53.1 moeB-rpl9_p1 moeB-rpl9 1 ACCGGGAATAATTGGCGTTT CTTGCCTTCTTGACCCAGTT 20 20 45.0 50.0 58.2 58.0 6.3 0.0 0.171066 93063 94833 2363-2363 0.333333 52.0 moeB-rpl9_p2 moeB-rpl9 2 AAGGTGGTCCGAGGTATTCT CTTGCCTTCTTGACCCAGTT 20 20 50.0 50.0 57.8 58.0 0.0 0.0 0.262427 93063 94833 2451-2451 0.333333 51.2 moeB-rpl9_p3 moeB-rpl9 3 ACCGGGAATAATTGGCGTTT TTCTTGACCCAGTTTTGGCA 20 20 45.0 45.0 58.2 57.8 6.3 0.0 0.309451 93063 94833 2357-2357 0.333333 50.9 moeB-rpl9_p4 moeB-rpl9 4 GCAGCTCTAATTCTCGTGCA CTTGCCTTCTTGACCCAGTT 20 20 50.0 50.0 58.4 58.0 0.0 0.0 0.368084 93063 94833 1980-1980 0.333333 50.4 moeB-rpl9_p5 moeB-rpl9 5 TGCAGCTCTAATTCTCGTGC CTTGCCTTCTTGACCCAGTT 20 20 50.0 50.0 58.4 58.0 0.0 0.0 0.368084 93063 94833 1981-1981 0.333333 50.4 clpC-rpl19_p1 clpC-rpl19 1 CCCCAGTTGTCTTGCTTCTT CCAAGAAGACGCTCTACCAC 20 20 50.0 55.0 58.0 58.0 0.0 0.0 0.015449 100053 101083 2046-2046 0.333333 53.2 clpC-rpl19_p2 clpC-rpl19 2 AGAAGGCCTACATCTAGCGT CCAAGAAGACGCTCTACCAC 20 20 50.0 55.0 57.9 58.0 5.2 0.0 0.077059 100053 101083 2495-2495 0.333333 52.7 clpC-rpl19_p3 clpC-rpl19 3 CCCCAGTTGTCTTGCTTCTT ACCGACCCATAAGGATGCTA 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.110228 100053 101083 1927-1927 0.333333 52.5 clpC-rpl19_p4 clpC-rpl19 4 CCCCAGTTGTCTTGCTTCTT AGACGCTCTACCACTAAGCT 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.144893 100053 101083 2040-2040 0.333333 52.2 clpC-rpl19_p5 clpC-rpl19 5 CCCCAGTTGTCTTGCTTCTT TTACTAATTGGGCCGGGTTG 20 20 50.0 50.0 58.0 57.9 0.0 2.2 0.144893 100053 101083 2009-2009 0.333333 52.2 ycf38_p1 ycf38 1 CAACAGTGCCAGCTGCTATA GCTCCTGCACGACAAGAATA 20 20 50.0 50.0 58.0 58.0 8.7 0.0 0.038565 110242 111117 1942-1942 0.666667 73.7 ycf38_p2 ycf38 2 CAGAAATTAAGCGTCCGGGA GCTCCTGCACGACAAGAATA 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.028687 110242 111117 1381-1381 0.333333 53.1 ycf38_p3 ycf38 3 GCTAGTATCCCAACAGTGCC GCTCCTGCACGACAAGAATA 20 20 55.0 50.0 58.0 58.0 0.0 0.0 0.055218 110242 111117 1952-1952 0.333333 52.9 ycf38_p4 ycf38 4 ATGGGTTAAATCCGTCTGGC GCTCCTGCACGACAAGAATA 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.062927 110242 111117 1894-1894 0.333333 52.8 ycf38_p5 ycf38 5 CAGAAATTAAGCGTCCGGGA AACTTGAACAAGCTCCTGCA 20 20 50.0 45.0 58.0 57.9 0.0 13.5 0.075679 110242 111117 1392-1392 0.333333 52.7 rps5_p1 rps5 1 GACTCCATTTTGCCCAAAGC CAAGGTAGCGAGACTGTTCC 20 20 50.0 55.0 57.9 58.0 0.0 0.0 0.086940 118832 119359 1099-1099 0.333333 52.6 rps5_p2 rps5 2 CGCCAACCCTATCTTTGTGA CAAGGTAGCGAGACTGTTCC 20 20 50.0 55.0 57.9 58.0 0.0 0.0 0.110281 118832 119359 933-933 0.333333 52.5 rps5_p3 rps5 3 GACTCCATTTTGCCCAAAGC AAGGTAGCGAGACTGTTCCT 20 20 50.0 50.0 57.9 58.1 0.0 0.0 0.158501 118832 119359 1098-1098 0.333333 52.1 rps5_p4 rps5 4 CGCCAACCCTATCTTTGTGA AAGGTAGCGAGACTGTTCCT 20 20 50.0 50.0 57.9 58.1 0.0 0.0 0.181842 118832 119359 932-932 0.333333 51.9 rps5_p5 rps5 5 GAAGCGCCATTACCTATCCC CAAGGTAGCGAGACTGTTCC 20 20 55.0 55.0 58.2 58.0 2.3 0.0 0.192647 118832 119359 1467-1467 0.333333 51.8 atpB_p1 atpB 1 GTTGCTTCAGCGAGTTCAAC ATTATGCCGCGCTTACAGAA 20 20 50.0 45.0 58.0 58.1 0.0 5.6 0.076071 154086 155507 2507-2507 0.333333 52.7 atpB_p2 atpB 2 GTTGTTGCTTCAGCGAGTTC ATTATGCCGCGCTTACAGAA 20 20 50.0 45.0 58.0 58.1 0.0 5.6 0.076071 154086 155507 2510-2510 0.333333 52.7 atpB_p3 atpB 3 TTGCTTCAGCGAGTTCAACT ATTATGCCGCGCTTACAGAA 20 20 45.0 45.0 58.0 58.1 0.0 5.6 0.098337 154086 155507 2506-2506 0.333333 52.5 atpB_p4 atpB 4 GTTGCTTCAGCGAGTTCAAC TGTCAGCTCAATCAGAAGGC 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.129182 154086 155507 2377-2377 0.333333 52.3 atpB_p5 atpB 5 GTTGTTGCTTCAGCGAGTTC TGTCAGCTCAATCAGAAGGC 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.129182 154086 155507 2380-2380 0.333333 52.3 orf12-trnG-UCC_p1 orf12-trnG-UCC 1 ATCCTGAAGTTTTTGGGCTT ACACGTGTTGGACAACCTTT 20 20 40.0 45.0 55.4 58.2 0.0 17.2 2.769693 185681 186330 1419-1419 0.333333 31.2 orf12-trnG-UCC_p2 orf12-trnG-UCC 2 ATCCTGAAGTTTTTGGGCTT AACCAGGCAACATCACTAGC 20 20 40.0 50.0 55.4 58.2 0.0 0.0 2.772287 185681 186330 1380-1380 0.333333 31.2 orf12-trnG-UCC_p3 orf12-trnG-UCC 3 ATCCTGAAGTTTTTGGGCTT TTCCAAGCTAATGATGCGGG 20 20 40.0 50.0 55.4 58.3 0.0 0.0 2.919533 185681 186330 1206-1206 0.333333 30.0 orf12-trnG-UCC_p4 orf12-trnG-UCC 4 ATCCTGAAGTTTTTGGGCTT CCAGGCAACATCACTAGCTC 20 20 40.0 55.0 55.4 58.3 0.0 0.0 2.937331 185681 186330 1378-1378 0.333333 29.8 orf12-trnG-UCC_p5 orf12-trnG-UCC 5 ATCCTGAAGTTTTTGGGCTT CAGGCAACATCACTAGCTCA 20 20 40.0 50.0 55.4 57.6 0.0 0.0 2.990288 185681 186330 1377-1377 0.333333 29.4 trnG-UCC-pafII_p1 trnG-UCC-pafII 1 CCCGCATCATTAGCTTGGAA AACCAGGCAACATCACTAGC 20 20 50.0 50.0 58.3 58.2 0.0 0.0 0.494476 186402 186481 192-194 1.000000 84.9 trnG-UCC-pafII_p2 trnG-UCC-pafII 2 CCCGCATCATTAGCTTGGAA CCAGGCAACATCACTAGCTC 20 20 50.0 55.0 58.3 58.3 0.0 0.0 0.659520 186402 186481 190-192 1.000000 83.6 trnG-UCC-pafII_p3 trnG-UCC-pafII 3 ATCGAACCCGCATCATTAGC AACCAGGCAACATCACTAGC 20 20 50.0 50.0 58.5 58.2 0.0 0.0 0.660689 186402 186481 198-200 1.000000 83.5 trnG-UCC-pafII_p4 trnG-UCC-pafII 4 CCCGCATCATTAGCTTGGAA CAGGCAACATCACTAGCTCA 20 20 50.0 50.0 58.3 57.6 0.0 0.0 0.712477 186402 186481 189-191 1.000000 83.1 trnG-UCC-pafII_p5 trnG-UCC-pafII 5 AACCCGCATCATTAGCTTGG AACCAGGCAACATCACTAGC 20 20 50.0 50.0 58.6 58.2 0.0 0.0 0.781026 186402 186481 194-196 1.000000 82.6