feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score psbA gene psbA psbA 107 1168 -1 1062 LSC 0.000000 0 0 64 218 no 0.000000 1 0.000000 0.000000 1.000000 29.800000 IGS_001 igs psbA|trnK-UUU psbA-trnK-UUU 1169 1403 0 235 LSC 0.002837 1 1 300 152 no 1.000000 3 1.000000 0.002843 1.000000 51.200000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1404 1432 -1 29 LSC 0.000000 0 0 16 123 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 matK gene matK matK 1680 3236 -1 1557 LSC 0.002141 5 0 17 141 no 1.000000 3 1.000000 0.002141 1.000000 46.300000 IGS_004 igs matK|trnK-UUU matK-trnK-UUU 3237 4029 0 793 LSC 0.002522 3 8 300 300 no 0.333333 2 0.500000 0.002548 1.000000 49.000000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4030 4066 -1 37 LSC 0.000000 0 0 181 300 no 0.000000 1 0.000000 0.000000 1.000000 32.300000 IGS_005 igs trnK-UUU|rps16 trnK-UUU-rps16 4067 4639 0 573 LSC 0.000000 0 0 218 48 no 0.000000 1 0.000000 0.000000 1.000000 28.000000 rps16 gene rps16 rps16 4640 5758 -1 1119 LSC 0.001787 3 0 300 157 no 0.333333 2 0.500000 0.001787 1.000000 44.200000 IGS_006 igs rps16|trnQ-UUG rps16-trnQ-UUG 5759 6753 0 995 LSC 0.008040 12 5 300 115 yes 1.000000 3 1.000000 0.008077 1.000000 58.100000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 6754 6826 -1 73 LSC 0.000000 0 0 114 42 no 0.000000 1 0.000000 0.000000 1.000000 21.900000 IGS_007 igs trnQ-UUG|psbK trnQ-UUG-psbK 6827 7168 0 342 LSC 0.005848 3 0 187 300 no 0.333333 2 0.500000 0.005848 1.000000 43.600000 psbK gene psbK psbK 7169 7354 1 186 LSC 0.000000 0 0 58 300 no 0.000000 1 0.000000 0.000000 1.000000 23.100000 IGS_008 igs psbK|psbI psbK-psbI 7355 7771 0 417 LSC 0.001599 1 0 244 144 no 0.333333 2 0.500000 0.001599 1.000000 39.300000 psbI gene psbI psbI 7772 7882 1 111 LSC 0.000000 0 0 106 33 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 IGS_009 igs psbI|trnS-GCU psbI-trnS-GCU 7883 8027 0 145 LSC 0.009195 2 0 217 132 no 1.000000 3 1.000000 0.009195 1.000000 53.300000 trnS-GCU tRNA trnS-GCU trnS-GCU 8028 8115 -1 88 LSC 0.000000 0 0 35 44 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_010 igs trnS-GCU|trnG-GCC trnS-GCU-trnG-GCC 8116 8681 0 566 LSC 0.012956 11 0 123 300 yes 1.000000 3 1.000000 0.012956 1.000000 60.500000 trnG-GCC_part1 tRNA trnG-GCC trnG-GCC 8682 8704 1 23 LSC 0.000000 0 0 77 300 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 trnG-GCC_part2 tRNA trnG-GCC trnG-GCC 9397 9443 1 47 LSC 0.000000 0 0 11 290 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_013 igs trnG-GCC|trnR-UCU trnG-GCC-trnR-UCU 9444 9585 0 142 LSC 0.000000 0 1 58 148 no 0.333333 2 0.500000 0.000000 1.000000 30.200000 trnR-UCU tRNA trnR-UCU trnR-UCU 9586 9657 1 72 LSC 0.000000 0 0 200 76 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_014 igs trnR-UCU|atpA trnR-UCU-atpA 9658 9799 0 142 LSC 0.009390 2 1 272 243 yes 1.000000 3 1.000000 0.009440 1.000000 59.300000 atpA gene atpA atpA 9800 11323 -1 1524 LSC 0.000437 1 0 34 96 no 0.333333 2 0.500000 0.000437 1.000000 34.000000 IGS_015 igs atpA|atpF atpA-atpF 11324 11395 0 72 LSC 0.000000 0 0 300 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 atpF gene atpF atpF 11396 12921 -1 1526 LSC 0.000874 2 1 300 3 no 1.000000 3 1.000000 0.000874 0.999345 44.500000 IGS_016 igs atpF|atpH atpF-atpH 12922 13087 0 166 LSC 0.008032 2 0 300 300 no 0.333333 2 0.500000 0.008032 1.000000 45.100000 atpH gene atpH atpH 13088 13333 -1 246 LSC 0.000000 0 0 40 146 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_017 igs atpH|atpI atpH-atpI 13334 14086 0 753 LSC 0.004427 5 19 286 300 no 0.333333 2 0.500000 0.004541 1.000000 52.000000 atpI gene atpI atpI 14087 14830 -1 744 LSC 0.000000 0 0 2 121 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 IGS_018 igs atpI|rps2 atpI-rps2 14831 15120 0 290 LSC 0.002299 1 0 300 300 no 0.333333 2 0.500000 0.002299 1.000000 41.500000 rps2 gene rps2 rps2 15121 15831 -1 711 LSC 0.001875 2 0 168 11 no 0.333333 2 0.500000 0.001875 1.000000 33.300000 IGS_019 igs rps2|rpoC2 rps2-rpoC2 15832 16055 0 224 LSC 0.002976 1 1 300 57 no 0.333333 2 0.500000 0.002990 1.000000 31.700000 rpoC2 gene rpoC2 rpoC2 16056 20204 -1 4149 LSC 0.001928 12 0 212 100 no 1.000000 3 1.000000 0.001928 1.000000 47.600000 IGS_020 igs rpoC2|rpoC1 rpoC2-rpoC1 20205 20397 0 193 LSC 0.003454 1 0 300 15 no 0.333333 2 0.500000 0.003454 1.000000 28.300000 rpoC1 gene rpoC1 rpoC1 20398 23204 -1 2807 LSC 0.000950 4 1 92 198 no 0.333333 2 0.500000 0.000950 1.000000 36.100000 IGS_021 igs rpoC1|rpoB rpoC1-rpoB 23205 23230 0 26 LSC 0.000000 0 0 300 172 no 0.000000 1 0.000000 0.000000 1.000000 31.600000 rpoB gene rpoB rpoB 23231 26443 -1 3213 LSC 0.001037 5 0 300 192 no 0.333333 2 0.500000 0.001037 1.000000 42.900000 IGS_022 igs rpoB|trnC-GCA rpoB-trnC-GCA 26444 27760 0 1317 LSC 0.004050 8 1 300 190 no 0.333333 2 0.500000 0.004053 1.000000 48.200000 trnC-GCA tRNA trnC-GCA trnC-GCA 27761 27838 1 78 LSC 0.000000 0 0 30 112 no 0.000000 1 0.000000 0.000000 1.000000 21.000000 IGS_023 igs trnC-GCA|petN trnC-GCA-petN 27839 28625 0 787 LSC 0.003388 4 1 108 83 no 1.000000 3 1.000000 0.003392 1.000000 52.300000 petN gene petN petN 28626 28715 1 90 LSC 0.007407 1 0 163 32 no 0.333333 2 0.500000 0.007407 1.000000 32.100000 IGS_024 igs petN|psbM petN-psbM 28716 29385 0 670 LSC 0.003980 4 0 6 128 no 1.000000 3 1.000000 0.003980 1.000000 46.700000 psbM gene psbM psbM 29386 29490 -1 105 LSC 0.000000 0 0 142 23 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_025 igs psbM|trnD-GUC psbM-trnD-GUC 29491 30602 0 1112 LSC 0.005396 9 0 247 300 yes 1.000000 3 1.000000 0.005396 1.000000 62.200000 trnD-GUC tRNA trnD-GUC trnD-GUC 30603 30676 -1 74 LSC 0.000000 0 0 48 300 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_026 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 30677 30973 0 297 LSC 0.000000 0 1 122 244 no 0.333333 2 0.500000 0.000000 1.000000 34.500000 trnY-GUA tRNA trnY-GUA trnY-GUA 30974 31057 -1 84 LSC 0.000000 0 0 300 160 no 0.000000 1 0.000000 0.000000 1.000000 30.800000 IGS_027 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 31058 31121 0 64 LSC 0.000000 0 0 300 96 no 0.000000 1 0.000000 0.000000 1.000000 25.900000 trnE-UUC tRNA trnE-UUC trnE-UUC 31122 31194 -1 73 LSC 0.000000 0 0 300 23 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_028 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 31195 32409 0 1215 LSC 0.005496 10 16 300 130 yes 1.000000 3 1.000000 0.005535 0.998354 58.500000 trnT-GGU tRNA trnT-GGU trnT-GGU 32410 32481 1 72 LSC 0.000000 0 0 146 58 no 0.000000 1 0.000000 0.000000 1.000000 23.100000 IGS_029 igs trnT-GGU|psbD trnT-GGU-psbD 32482 33393 0 912 LSC 0.004386 6 1 218 300 no 0.333333 2 0.500000 0.004391 1.000000 49.200000 psbD gene psbD psbD 33394 34455 1 1062 LSC 0.000000 0 0 93 300 no 0.000000 1 0.000000 0.000000 1.000000 32.000000 IGS_030 igs psbD|psbC psbD-psbC 34456 34600 0 145 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbC gene psbC psbC 34601 35824 1 1224 LSC 0.000000 0 0 300 244 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_031 igs psbC|trnS-UGA psbC-trnS-UGA 35825 35962 0 138 LSC 0.000000 0 9 300 106 no 0.333333 2 0.500000 0.000000 1.000000 38.500000 trnS-UGA tRNA trnS-UGA trnS-UGA 35963 36054 -1 92 LSC 0.000000 0 0 300 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_032 igs trnS-UGA|psbZ trnS-UGA-psbZ 36055 36281 0 227 LSC 0.008811 3 0 300 300 no 0.333333 2 0.500000 0.008811 1.000000 45.600000 psbZ gene psbZ psbZ 36282 36470 1 189 LSC 0.000000 0 0 73 300 no 0.000000 1 0.000000 0.000000 1.000000 24.200000 IGS_033 igs psbZ|trnfM-CAU psbZ-trnfM-CAU 36471 36995 0 525 LSC 0.000000 0 0 262 300 no 0.000000 1 0.000000 0.000000 1.000000 38.400000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 36996 37069 -1 74 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_034 igs trnfM-CAU|rps14 trnfM-CAU-rps14 37070 37225 0 156 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps14 gene rps14 rps14 37226 37528 -1 303 LSC 0.000000 0 0 300 251 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_035 igs rps14|psaB rps14-psaB 37529 37665 0 137 LSC 0.000000 0 0 300 114 no 0.000000 1 0.000000 0.000000 1.000000 27.300000 psaB gene psaB psaB 37666 39870 -1 2205 LSC 0.001209 4 0 300 300 no 0.333333 2 0.500000 0.001209 1.000000 45.600000 IGS_036 igs psaB|psaA psaB-psaA 39871 39895 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 39896 42148 -1 2253 LSC 0.000888 3 0 300 232 no 0.333333 2 0.500000 0.000888 1.000000 45.200000 IGS_037 igs psaA|ycf3 psaA-ycf3 42149 42826 0 678 LSC 0.001967 2 1 300 300 no 0.333333 2 0.500000 0.001969 1.000000 47.700000 ycf3 gene ycf3 ycf3 42827 44824 -1 1998 LSC 0.002002 6 8 300 116 no 1.000000 3 1.000000 0.002008 1.000000 53.100000 IGS_038 igs ycf3|trnS-GGA ycf3-trnS-GGA 44825 45300 0 476 LSC 0.002801 2 0 212 300 no 0.333333 2 0.500000 0.002801 1.000000 45.500000 trnS-GGA tRNA trnS-GGA trnS-GGA 45301 45387 1 87 LSC 0.000000 0 0 255 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_039 igs trnS-GGA|rps4 trnS-GGA-rps4 45388 45656 0 269 LSC 0.000000 0 0 300 252 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps4 gene rps4 rps4 45657 46262 -1 606 LSC 0.001100 1 0 300 300 no 0.333333 2 0.500000 0.001100 1.000000 47.000000 IGS_040 igs rps4|trnT-UGU rps4-trnT-UGU 46263 46596 0 334 LSC 0.000000 0 0 300 172 no 0.000000 1 0.000000 0.000000 1.000000 32.400000 trnT-UGU tRNA trnT-UGU trnT-UGU 46597 46669 -1 73 LSC 0.000000 0 0 300 99 no 0.000000 1 0.000000 0.000000 1.000000 26.200000 IGS_041 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 46670 47286 0 617 LSC 0.003241 3 1 300 151 yes 1.000000 3 1.000000 0.003245 1.000000 57.300000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 47287 47321 1 35 LSC 0.000000 0 0 111 116 no 0.000000 1 0.000000 0.000000 1.000000 27.100000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 48153 48202 1 50 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_044 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 48203 48587 0 385 LSC 0.000000 0 0 300 19 no 0.000000 1 0.000000 0.000000 1.000000 21.900000 trnF-GAA tRNA trnF-GAA trnF-GAA 48588 48660 1 73 LSC 0.009132 1 0 300 187 no 0.333333 2 0.500000 0.009132 1.000000 44.800000 IGS_045 igs trnF-GAA|trnV-UAC trnF-GAA-trnV-UAC 48661 51542 0 2882 LSC 0.003238 14 0 53 71 yes 0.333333 2 0.500000 0.003238 1.000000 34.400000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 51543 51587 -1 45 LSC 0.000000 0 0 280 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 52152 52190 -1 39 LSC 0.000000 0 0 191 154 no 0.000000 1 0.000000 0.000000 1.000000 30.300000 IGS_048 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 52191 52367 0 177 LSC 0.003766 1 0 230 298 no 0.333333 2 0.500000 0.003766 1.000000 42.400000 trnM-CAU tRNA trnM-CAU trnM-CAU 52368 52439 1 72 LSC 0.000000 0 0 22 226 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 IGS_049 igs trnM-CAU|atpE trnM-CAU-atpE 52440 52618 0 179 LSC 0.000000 0 0 94 47 no 0.000000 1 0.000000 0.000000 1.000000 22.300000 atpE gene atpE atpE 52619 53023 -1 405 LSC 0.001646 1 0 273 300 no 0.333333 2 0.500000 0.001646 1.000000 43.200000 atpB gene atpB atpB 53020 54516 -1 1497 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_051 igs atpB|rbcL atpB-rbcL 54517 55501 0 985 LSC 0.002030 3 24 300 300 yes 1.000000 3 1.000000 0.002080 1.000000 62.800000 rbcL gene rbcL rbcL 55502 56944 1 1443 LSC 0.000924 2 0 300 68 no 0.333333 2 0.500000 0.000924 1.000000 36.900000 IGS_052 igs rbcL|accD rbcL-accD 56945 57782 0 838 LSC 0.007955 10 0 300 213 yes 0.333333 2 0.500000 0.007955 1.000000 51.300000 accD gene accD accD 57783 59231 1 1449 LSC 0.001842 4 2 300 273 yes 1.000000 3 1.000000 0.001843 0.999310 60.100000 IGS_053 igs accD|psaI accD-psaI 59232 59702 0 471 LSC 0.002837 2 2 300 114 no 1.000000 3 1.000000 0.002843 0.997877 51.900000 psaI gene psaI psaI 59703 59813 1 111 LSC 0.000000 0 0 190 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_054 igs psaI|ycf4 psaI-ycf4 59814 60215 0 402 LSC 0.001658 1 0 300 300 no 0.333333 2 0.500000 0.001658 1.000000 43.200000 ycf4 gene ycf4 ycf4 60216 60770 1 555 LSC 0.000000 0 0 300 231 no 0.000000 1 0.000000 0.000000 1.000000 39.100000 IGS_055 igs ycf4|cemA ycf4-cemA 60771 61526 0 756 LSC 0.004409 5 11 300 300 yes 1.000000 3 1.000000 0.004468 1.000000 63.200000 cemA gene cemA cemA 61527 62216 1 690 LSC 0.000000 0 0 32 300 no 0.000000 1 0.000000 0.000000 1.000000 27.400000 IGS_056 igs cemA|petA cemA-petA 62217 62446 0 230 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 petA gene petA petA 62447 63409 1 963 LSC 0.000000 0 0 300 19 no 0.000000 1 0.000000 0.000000 1.000000 26.400000 IGS_057 igs petA|psbJ petA-psbJ 63410 64216 0 807 LSC 0.004131 5 0 300 230 no 0.333333 2 0.500000 0.004131 1.000000 48.900000 psbJ gene psbJ psbJ 64217 64339 -1 123 LSC 0.000000 0 0 8 107 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_058 igs psbJ|psbL psbJ-psbL 64340 64472 0 133 LSC 0.005013 1 0 131 300 no 0.333333 2 0.500000 0.005013 1.000000 38.000000 psbL gene psbL psbL 64473 64589 -1 117 LSC 0.000000 0 0 25 300 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_059 igs psbL|psbF psbL-psbF 64590 64611 0 22 LSC 0.000000 0 0 142 300 no 0.000000 1 0.000000 0.000000 1.000000 29.400000 psbF gene psbF psbF 64612 64731 -1 120 LSC 0.000000 0 0 164 300 no 0.000000 1 0.000000 0.000000 1.000000 31.100000 IGS_060 igs psbF|psbE psbF-psbE 64732 64741 0 10 LSC 0.000000 0 0 284 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 64742 64993 -1 252 LSC 0.000000 0 0 294 229 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_061 igs psbE|petL psbE-petL 64994 65826 0 833 LSC 0.003201 4 18 300 300 no 0.333333 2 0.500000 0.003272 1.000000 50.800000 petL gene petL petL 65827 65922 1 96 LSC 0.000000 0 0 198 300 no 0.000000 1 0.000000 0.000000 1.000000 33.600000 IGS_062 igs petL|petG petL-petG 65923 66101 0 179 LSC 0.000000 0 0 294 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 petG gene petG petG 66102 66215 1 114 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_063 igs petG|trnW-CCA petG-trnW-CCA 66216 66333 0 118 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnW-CCA tRNA trnW-CCA trnW-CCA 66334 66407 -1 74 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_064 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 66408 66567 0 160 LSC 0.000000 0 0 300 170 no 0.000000 1 0.000000 0.000000 1.000000 31.500000 trnP-UGG tRNA trnP-UGG trnP-UGG 66568 66642 -1 75 LSC 0.000000 0 0 300 95 no 0.000000 1 0.000000 0.000000 1.000000 25.900000 IGS_065 igs trnP-UGG|psaJ trnP-UGG-psaJ 66643 66989 0 347 LSC 0.007685 4 2 300 116 no 0.333333 2 0.500000 0.007729 1.000000 40.200000 psaJ gene psaJ psaJ 66990 67124 1 135 LSC 0.004938 1 0 45 15 no 0.333333 2 0.500000 0.004938 1.000000 29.300000 IGS_066 igs psaJ|rpl33 psaJ-rpl33 67125 67718 0 594 LSC 0.005612 5 1 18 58 yes 1.000000 3 1.000000 0.005620 1.000000 48.700000 rpl33 gene rpl33 rpl33 67719 67919 1 201 LSC 0.003317 1 0 300 12 no 0.333333 2 0.500000 0.003317 1.000000 28.000000 IGS_067 igs rpl33|rps18 rpl33-rps18 67920 68101 0 182 LSC 0.003663 1 0 142 300 no 0.333333 2 0.500000 0.003663 1.000000 38.000000 rps18 gene rps18 rps18 68102 68407 1 306 LSC 0.000000 0 0 169 78 no 0.000000 1 0.000000 0.000000 1.000000 24.700000 IGS_068 igs rps18|rpl20 rps18-rpl20 68408 68654 0 247 LSC 0.005398 2 0 300 184 no 0.333333 2 0.500000 0.005398 1.000000 42.200000 rpl20 gene rpl20 rpl20 68655 69053 -1 399 LSC 0.001671 1 0 75 173 no 0.333333 2 0.500000 0.001671 1.000000 33.800000 IGS_069 igs rpl20|rps12 rpl20-rps12 69054 69801 0 748 LSC 0.006239 7 0 214 300 no 0.333333 2 0.500000 0.006239 1.000000 50.200000 rps12_part1 gene rps12 rps12 69802 69915 -1 114 LSC 0.000000 0 0 37 300 no 0.000000 1 0.000000 0.000000 1.000000 21.500000 IGS_070 igs rps12|clpP rps12-clpP 69916 70048 0 133 LSC 0.000000 0 0 151 300 no 0.000000 1 0.000000 0.000000 1.000000 30.100000 clpP gene clpP clpP 70049 72245 -1 2197 LSC 0.003034 10 9 284 142 no 1.000000 3 1.000000 0.003046 1.000000 55.400000 IGS_071 igs clpP|psbB clpP-psbB 72246 72930 0 685 LSC 0.008759 9 10 91 300 yes 1.000000 3 1.000000 0.008882 1.000000 57.800000 psbB gene psbB psbB 72931 74457 1 1527 LSC 0.000000 0 0 83 9 no 0.000000 1 0.000000 0.000000 1.000000 25.600000 IGS_072 igs psbB|psbT psbB-psbT 74458 75027 0 570 LSC 0.005848 5 16 300 300 yes 1.000000 3 1.000000 0.006006 1.000000 65.100000 psbT gene psbT psbT 75028 75135 1 108 LSC 0.000000 0 0 130 300 no 0.000000 1 0.000000 0.000000 1.000000 28.500000 IGS_073 igs psbT|psbN psbT-psbN 75136 75198 0 63 LSC 0.000000 0 0 238 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbN gene psbN psbN 75199 75330 -1 132 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_074 igs psbN|psbH psbN-psbH 75331 75441 0 111 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbH gene psbH psbH 75442 75663 1 222 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_075 igs psbH|petB psbH-petB 75664 75817 0 154 LSC 0.000000 0 0 300 215 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 petB gene petB petB 75818 77202 1 1385 LSC 0.000963 2 0 300 161 no 0.333333 2 0.500000 0.000963 1.000000 43.900000 IGS_076 igs petB|petD petB-petD 77203 77387 0 185 LSC 0.003604 1 0 300 144 no 0.333333 2 0.500000 0.003604 1.000000 38.100000 petD gene petD petD 77388 78694 1 1307 LSC 0.002550 5 1 23 12 no 0.333333 2 0.500000 0.002552 1.000000 33.900000 IGS_077 igs petD|rpoA petD-rpoA 78695 78876 0 182 LSC 0.029304 8 0 300 81 no 0.333333 2 0.500000 0.029304 1.000000 49.800000 rpoA gene rpoA rpoA 78877 79896 -1 1020 LSC 0.002614 4 0 119 212 yes 0.333333 2 0.500000 0.002614 1.000000 41.800000 IGS_078 igs rpoA|rps11 rpoA-rps11 79897 79979 0 83 LSC 0.000000 0 0 126 129 no 0.000000 1 0.000000 0.000000 1.000000 28.200000 rps11 gene rps11 rps11 79980 80396 -1 417 LSC 0.003197 2 0 209 254 no 0.333333 2 0.500000 0.003197 1.000000 44.500000 IGS_079 igs rps11|rpl36 rps11-rpl36 80397 80549 0 153 LSC 0.000000 0 0 227 101 no 0.000000 1 0.000000 0.000000 1.000000 26.300000 rpl36 gene rpl36 rpl36 80550 80663 -1 114 LSC 0.005848 1 0 300 178 no 0.333333 2 0.500000 0.005848 1.000000 42.100000 IGS_080 igs rpl36|infA rpl36-infA 80664 80793 0 130 LSC 0.000000 0 1 12 48 no 0.333333 2 0.500000 0.000000 1.000000 26.800000 infA gene infA infA 80794 81027 -1 234 LSC 0.002849 1 0 142 300 no 0.333333 2 0.500000 0.002849 1.000000 37.500000 IGS_081 igs infA|rps8 infA-rps8 81028 81140 0 113 LSC 0.000000 0 0 185 300 no 0.000000 1 0.000000 0.000000 1.000000 32.600000 rps8 gene rps8 rps8 81141 81536 -1 396 LSC 0.000000 0 0 298 300 no 0.000000 1 0.000000 0.000000 1.000000 35.800000 IGS_082 igs rps8|rpl14 rps8-rpl14 81537 81745 0 209 LSC 0.000000 0 1 300 240 no 0.333333 2 0.500000 0.000000 1.000000 40.500000 rpl14 gene rpl14 rpl14 81746 82114 -1 369 LSC 0.003613 2 0 300 125 no 0.333333 2 0.500000 0.003613 1.000000 38.100000 IGS_083 igs rpl14|rpl16 rpl14-rpl16 82115 82259 0 145 LSC 0.004598 1 1 18 12 no 0.333333 2 0.500000 0.004630 1.000000 29.600000 rpl16 gene rpl16 rpl16 82260 83758 -1 1499 LSC 0.003558 8 16 19 179 no 1.000000 3 1.000000 0.003595 1.000000 48.700000 IGS_084 igs rpl16|rps3 rpl16-rps3 83759 83932 0 174 LSC 0.000000 0 0 300 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 rps3 gene rps3 rps3 83933 84592 -1 660 LSC 0.004040 4 0 300 300 no 0.333333 2 0.500000 0.004040 1.000000 48.800000 IGS_085 igs rps3|rpl22 rps3-rpl22 84593 84647 0 55 LSC 0.000000 0 0 294 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl22 gene rpl22 rpl22 84648 85013 -1 366 LSC 0.001821 1 0 300 7 no 0.333333 2 0.500000 0.001821 1.000000 28.100000 IGS_086 igs rpl22|rps19 rpl22-rps19 85014 85187 0 174 IRb 0.007663 2 0 19 300 no 0.333333 2 0.500000 0.007663 1.000000 31.300000 rps19 gene rps19 rps19 85188 85466 -1 279 IRb 0.000000 0 0 87 233 no 0.000000 1 0.000000 0.000000 1.000000 25.300000 IGS_087 igs rps19|trnH-GUG rps19-trnH-GUG 85467 85590 0 124 IRb 0.000000 0 0 300 109 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 trnH-GUG tRNA trnH-GUG trnH-GUG 85591 85665 1 75 IRb 0.000000 0 0 300 34 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 IGS_088 igs trnH-GUG|rpl2 trnH-GUG-rpl2 85666 85707 0 42 IRb 0.015873 1 0 300 246 no 0.333333 2 0.500000 0.015873 1.000000 50.100000 rpl2 gene rpl2 rpl2 85708 87187 -1 1480 IRb 0.000901 2 0 7 300 no 0.333333 2 0.500000 0.000901 1.000000 32.300000 IGS_089 igs rpl2|rpl23 rpl2-rpl23 87188 87211 0 24 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 87212 87493 -1 282 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_090 igs rpl23|trnI-CAU rpl23-trnI-CAU 87494 87659 0 166 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-CAU tRNA trnI-CAU trnI-CAU 87660 87733 -1 74 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_091 igs trnI-CAU|ycf2 trnI-CAU-ycf2 87734 87800 0 67 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 87801 94628 1 6828 IRb 0.000781 8 0 300 300 no 0.333333 2 0.500000 0.000781 1.000000 40.500000 IGS_092 igs ycf2|trnL-CAA ycf2-trnL-CAA 94629 95598 0 970 IRb 0.000000 0 0 203 135 no 0.000000 1 0.000000 0.000000 1.000000 35.100000 trnL-CAA tRNA trnL-CAA trnL-CAA 95599 95679 -1 81 IRb 0.000000 0 0 300 54 no 0.000000 1 0.000000 0.000000 1.000000 22.800000 IGS_093 igs trnL-CAA|rps7 trnL-CAA-rps7 95680 98777 0 3098 IRb 0.002152 10 0 300 219 no 1.000000 3 1.000000 0.002152 1.000000 56.800000 rps7 gene rps7 rps7 98778 99245 -1 468 IRb 0.001425 1 0 300 300 no 0.333333 2 0.500000 0.001425 1.000000 44.400000 IGS_094 igs rps7|rps12 rps7-rps12 99246 99303 0 58 IRb 0.000000 0 0 248 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 99304 100108 -1 805 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_095 igs rps12|trnV-GAC rps12-trnV-GAC 100109 101728 0 1620 IRb 0.000412 1 8 300 46 no 1.000000 3 1.000000 0.000413 1.000000 47.800000 trnV-GAC tRNA trnV-GAC trnV-GAC 101729 101800 1 72 IRb 0.009259 1 0 300 300 no 0.333333 2 0.500000 0.009259 1.000000 45.900000 IGS_096 igs trnV-GAC|rrn16S trnV-GAC-rrn16S 101801 102025 0 225 IRb 0.000000 0 0 25 300 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 rrn16S rRNA rrn16S rrn16S 102026 103515 1 1490 IRb 0.000000 0 0 250 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_097 igs rrn16S|trnI-GAU rrn16S-trnI-GAU 103516 103817 0 302 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 103818 103859 1 42 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 104763 104797 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_100 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 104798 104860 0 63 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 104861 104898 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 105692 105726 1 35 IRb 0.000000 0 0 300 51 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 IGS_103 igs trnA-UGC|rrn23S trnA-UGC-rrn23S 105727 105872 0 146 IRb 0.004566 1 0 300 300 no 0.333333 2 0.500000 0.004566 1.000000 42.900000 rrn23S rRNA rrn23S rrn23S 105873 108679 1 2807 IRb 0.000000 0 0 94 300 no 0.000000 1 0.000000 0.000000 1.000000 29.300000 IGS_104 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 108680 108777 0 98 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 108778 108880 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_105 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 108881 109092 0 212 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 109093 109213 1 121 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_106 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 109214 109445 0 232 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 109446 109519 1 74 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_107 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 109520 110069 0 550 IRb 0.007273 6 0 300 300 no 0.333333 2 0.500000 0.007273 1.000000 49.800000 trnN-GUU tRNA trnN-GUU trnN-GUU 110070 110141 -1 72 IRb 0.000000 0 0 19 300 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_108 igs trnN-GUU|rpl32 trnN-GUU-rpl32 110142 110620 0 479 IRb 0.009743 6 16 91 238 yes 1.000000 3 1.000000 0.007055 1.000000 57.800000 rpl32 gene rpl32 rpl32 110621 110782 1 162 SSC 0.000000 0 0 58 76 no 0.000000 1 0.000000 0.000000 1.000000 23.100000 IGS_109 igs rpl32|trnL-UAG rpl32-trnL-UAG 110783 111482 0 700 SSC 0.003810 4 16 220 138 no 0.333333 2 0.500000 0.003899 1.000000 46.600000 trnL-UAG tRNA trnL-UAG trnL-UAG 111483 111561 1 79 SSC 0.000000 0 0 174 59 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_110 igs trnL-UAG|ccsA trnL-UAG-ccsA 111562 111701 0 140 SSC 0.023810 5 0 253 300 yes 1.000000 3 1.000000 0.023810 1.000000 67.700000 ccsA gene ccsA ccsA 111702 112679 1 978 SSC 0.000682 1 0 52 81 no 0.333333 2 0.500000 0.000682 1.000000 35.600000 IGS_111 igs ccsA|psaC ccsA-psaC 112680 114576 0 1897 SSC 0.006677 19 9 300 18 yes 1.000000 3 1.000000 0.006707 1.000000 49.100000 psaC gene psaC psaC 114577 114822 -1 246 SSC 0.002710 1 0 54 267 no 0.333333 2 0.500000 0.002710 1.000000 30.800000 IGS_112 igs psaC|rps15 psaC-rps15 114823 117904 0 3082 SSC 0.003461 16 31 227 300 yes 1.000000 3 1.000000 0.003494 1.000000 58.900000 rps15 gene rps15 rps15 117905 118177 -1 273 SSC 0.000000 0 0 99 62 no 0.000000 1 0.000000 0.000000 1.000000 23.400000 IGS_113 igs rps15|ycf1 rps15-ycf1 118178 118538 0 361 SSC 0.001847 1 0 300 300 no 0.333333 2 0.500000 0.001847 1.000000 42.400000 ycf1 gene ycf1 ycf1 118539 123011 -1 4473 SSC 0.003279 22 6 298 300 yes 1.000000 3 1.000000 0.003283 1.000000 55.600000 IGS_114 igs ycf1|trnN-GUU ycf1-trnN-GUU 123012 124212 0 1201 SSC 0.001665 3 9 143 91 no 1.000000 3 1.000000 0.001676 1.000000 52.500000 trnN-GUU tRNA trnN-GUU trnN-GUU 124213 124284 1 72 IRa 0.000000 0 0 300 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_115 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 124285 124834 0 550 IRa 0.007273 6 0 300 300 no 0.333333 2 0.500000 0.007273 1.000000 49.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 124835 124908 -1 74 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_116 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 124909 125140 0 232 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 125141 125261 -1 121 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_117 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 125262 125473 0 212 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 125474 125576 -1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_118 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 125577 125674 0 98 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 125675 128481 -1 2807 IRa 0.000000 0 0 300 94 no 0.000000 1 0.000000 0.000000 1.000000 29.300000 IGS_119 igs rrn23S|trnA-UGC rrn23S-trnA-UGC 128482 128627 0 146 IRa 0.004566 1 0 300 300 no 0.333333 2 0.500000 0.004566 1.000000 42.900000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 128628 128662 -1 35 IRa 0.000000 0 0 51 300 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 129456 129493 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_122 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 129494 129556 0 63 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 129557 129591 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 130495 130536 -1 42 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_125 igs trnI-GAU|rrn16S trnI-GAU-rrn16S 130537 130838 0 302 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 130839 132328 -1 1490 IRa 0.000000 0 0 300 250 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_126 igs rrn16S|trnV-GAC rrn16S-trnV-GAC 132329 132553 0 225 IRa 0.000000 0 0 300 25 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 trnV-GAC tRNA trnV-GAC trnV-GAC 132554 132625 -1 72 IRa 0.009259 1 0 300 300 no 0.333333 2 0.500000 0.009259 1.000000 45.900000 IGS_127 igs trnV-GAC|rps12 trnV-GAC-rps12 132626 134245 0 1620 IRa 0.000412 1 8 46 300 no 1.000000 3 1.000000 0.000413 1.000000 47.800000 rps12_part2 gene rps12 rps12 134246 135050 1 805 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_128 igs rps12|rps7 rps12-rps7 135051 135108 0 58 IRa 0.000000 0 0 300 248 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 135109 135576 1 468 IRa 0.001425 1 0 300 300 no 0.333333 2 0.500000 0.001425 1.000000 44.400000 IGS_129 igs rps7|trnL-CAA rps7-trnL-CAA 135577 138674 0 3098 IRa 0.002152 10 0 219 300 no 1.000000 3 1.000000 0.002152 1.000000 56.800000 trnL-CAA tRNA trnL-CAA trnL-CAA 138675 138755 1 81 IRa 0.000000 0 0 54 300 no 0.000000 1 0.000000 0.000000 1.000000 22.800000 IGS_130 igs trnL-CAA|ycf2 trnL-CAA-ycf2 138756 139725 0 970 IRa 0.000000 0 0 135 203 no 0.000000 1 0.000000 0.000000 1.000000 35.100000 ycf2 gene ycf2 ycf2 139726 146553 -1 6828 IRa 0.000781 8 0 300 300 no 0.333333 2 0.500000 0.000781 1.000000 40.500000 IGS_131 igs ycf2|trnI-CAU ycf2-trnI-CAU 146554 146620 0 67 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-CAU tRNA trnI-CAU trnI-CAU 146621 146694 1 74 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_132 igs trnI-CAU|rpl23 trnI-CAU-rpl23 146695 146860 0 166 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 146861 147142 1 282 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_133 igs rpl23|rpl2 rpl23-rpl2 147143 147166 0 24 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl2 gene rpl2 rpl2 147167 148646 1 1480 IRa 0.000901 2 0 300 7 no 0.333333 2 0.500000 0.000901 1.000000 32.300000 IGS_134 igs rpl2|trnH-GUG rpl2-trnH-GUG 148647 148688 0 42 IRa 0.015873 1 0 246 300 no 0.333333 2 0.500000 0.015873 1.000000 50.100000 trnH-GUG tRNA trnH-GUG trnH-GUG 148689 148763 -1 75 IRa 0.000000 0 0 34 300 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 IGS_135 igs trnH-GUG|rps19 trnH-GUG-rps19 148764 148887 0 124 IRa 0.000000 0 0 109 300 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 rps19 gene rps19 rps19 148888 149166 1 279 IRa 0.000000 0 0 233 87 no 0.000000 1 0.000000 0.000000 1.000000 25.300000 IGS_136 igs rps19|psbA rps19-psbA 149167 106 0 290 IRa 0.020690 9 11 300 300 no 0.333333 2 0.500000 0.021505 1.000000 57.500000