feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score rps19 gene rps19 rps19 9 287 1 279 LSC 0.002389 1 0 300 43 no 0.333333 2 0.500000 0.002389 1.000000 29.700000 IGS_001 igs rps19|rps3 rps19-rps3 288 559 0 272 LSC 0.004902 2 22 174 53 no 0.333333 2 0.500000 0.005333 1.000000 37.500000 rps3 gene rps3 rps3 560 1201 1 642 LSC 0.008307 8 0 137 13 no 1.000000 3 1.000000 0.008307 1.000000 50.000000 IGS_002 igs rps3|rpl16 rps3-rpl16 1202 1339 0 138 LSC 0.009662 2 1 210 217 no 0.333333 2 0.500000 0.009732 1.000000 47.000000 rpl16 gene rpl16 rpl16 1340 2890 1 1551 LSC 0.005168 12 24 115 3 no 1.000000 3 1.000000 0.005239 0.998066 48.900000 IGS_003 igs rpl16|rpl14 rpl16-rpl14 2891 3028 0 138 LSC 0.014706 3 4 13 27 no 1.000000 3 1.000000 0.014816 0.985507 50.800000 rpl14 gene rpl14 rpl14 3029 3397 1 369 LSC 0.005420 3 0 16 15 no 0.333333 2 0.500000 0.005420 1.000000 31.000000 IGS_004 igs rpl14|rps8 rpl14-rps8 3398 3662 0 265 LSC 0.020126 8 9 9 67 no 0.333333 2 0.500000 0.020833 1.000000 42.400000 rps8 gene rps8 rps8 3663 4067 1 405 LSC 0.009877 6 0 58 27 no 1.000000 3 1.000000 0.009877 1.000000 48.000000 IGS_005 igs rps8|rpl36 rps8-rpl36 4068 4513 0 446 LSC 0.008969 6 1 51 142 no 1.000000 3 1.000000 0.008987 1.000000 50.300000 rpl36 gene rpl36 rpl36 4514 4627 1 114 LSC 0.000000 0 0 25 28 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_006 igs rpl36|rps11 rpl36-rps11 4628 4961 0 334 LSC 0.003992 2 9 139 22 no 0.333333 2 0.500000 0.004103 1.000000 33.000000 rps11 gene rps11 rps11 4962 5378 1 417 LSC 0.004796 3 0 268 54 no 0.333333 2 0.500000 0.004796 1.000000 34.500000 IGS_007 igs rps11|rpoA rps11-rpoA 5379 5451 0 73 LSC 0.009132 1 0 213 11 no 0.333333 2 0.500000 0.009132 1.000000 31.600000 rpoA gene rpoA rpoA 5452 6441 1 990 LSC 0.011448 17 0 18 300 no 0.333333 2 0.500000 0.011448 1.000000 39.900000 IGS_008 igs rpoA|petD rpoA-petD 6442 6654 0 213 LSC 0.000000 0 0 34 154 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 petD gene petD petD 6655 7883 -1 1229 LSC 0.002712 5 17 247 91 no 0.333333 2 0.500000 0.002750 1.000000 41.400000 IGS_009 igs petD|petB petD-petB 7884 8097 0 214 LSC 0.006231 2 0 147 183 no 0.333333 2 0.500000 0.006231 1.000000 40.000000 petB gene petB petB 8098 9581 -1 1484 LSC 0.006289 14 1 92 53 no 1.000000 3 1.000000 0.006293 1.000000 51.800000 IGS_010 igs petB|psbH petB-psbH 9582 9714 0 133 LSC 0.005013 1 0 88 79 no 0.333333 2 0.500000 0.005013 1.000000 34.100000 psbH gene psbH psbH 9715 9936 -1 222 LSC 0.009009 3 0 79 173 no 0.333333 2 0.500000 0.009009 1.000000 36.700000 IGS_011 igs psbH|psbN psbH-psbN 9937 10044 0 108 LSC 0.000000 0 0 51 65 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 psbN gene psbN psbN 10045 10176 1 132 LSC 0.005051 1 0 159 16 no 0.333333 2 0.500000 0.005051 1.000000 29.400000 IGS_012 igs psbN|psbT psbN-psbT 10177 10236 0 60 LSC 0.011111 1 0 66 7 no 0.333333 2 0.500000 0.011111 1.000000 32.600000 psbT gene psbT psbT 10237 10344 -1 108 LSC 0.012346 2 0 43 46 no 0.333333 2 0.500000 0.012346 1.000000 36.100000 IGS_013 igs psbT|psbB psbT-psbB 10345 10522 0 178 LSC 0.003745 1 3 26 110 no 0.333333 2 0.500000 0.003810 1.000000 31.300000 psbB gene psbB psbB 10523 12052 -1 1530 LSC 0.006536 15 0 131 104 no 1.000000 3 1.000000 0.006536 1.000000 55.700000 IGS_014 igs psbB|clpP psbB-clpP 12053 12523 0 471 LSC 0.029724 21 1 242 154 yes 1.000000 3 1.000000 0.029786 1.000000 71.800000 clpP gene clpP clpP 12524 14521 1 1998 LSC 0.014224 42 24 8 80 no 1.000000 3 1.000000 0.014003 0.996997 53.600000 IGS_015 igs clpP|rps12 clpP-rps12 14522 14703 0 182 LSC 0.003663 1 2 9 224 no 0.333333 2 0.500000 0.003704 1.000000 29.300000 rps12_part1 gene rps12 rps12 14704 14817 1 114 LSC 0.000000 0 0 101 110 no 0.000000 1 0.000000 0.000000 1.000000 26.300000 IGS_016 igs rps12|rpl20 rps12-rpl20 14818 15558 0 741 LSC 0.006298 7 0 215 244 yes 1.000000 3 1.000000 0.006298 1.000000 62.800000 rpl20 gene rpl20 rpl20 15559 15915 1 357 LSC 0.003735 2 0 1 62 no 0.333333 2 0.500000 0.003735 1.000000 28.600000 IGS_017 igs rpl20|rps18 rpl20-rps18 15916 16008 0 93 LSC 0.007168 1 0 102 23 no 0.333333 2 0.500000 0.007168 1.000000 31.300000 rps18 gene rps18 rps18 16009 16338 -1 330 LSC 0.010101 5 2 30 18 no 1.000000 3 1.000000 0.010132 1.000000 46.600000 IGS_018 igs rps18|rpl33 rps18-rpl33 16339 16575 0 237 LSC 0.014948 5 18 77 258 no 1.000000 3 1.000000 0.015152 0.940928 56.700000 rpl33 gene rpl33 rpl33 16576 16779 -1 204 LSC 0.000000 0 0 49 54 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_019 igs rpl33|psaJ rpl33-psaJ 16780 17264 0 485 LSC 0.010997 8 0 253 108 no 0.333333 2 0.500000 0.010997 1.000000 44.000000 psaJ gene psaJ psaJ 17265 17399 -1 135 LSC 0.004938 1 0 16 63 no 0.333333 2 0.500000 0.004938 1.000000 29.300000 IGS_020 igs psaJ|trnP psaJ-trnP 17400 17859 0 460 LSC 0.005848 4 25 26 4 no 1.000000 3 1.000000 0.006090 0.991304 50.300000 trnP tRNA trnP trnP 17860 17933 1 74 LSC 0.018018 2 0 110 290 no 0.333333 2 0.500000 0.018018 1.000000 44.700000 IGS_021 igs trnP|trnW trnP-trnW 17934 18051 0 118 LSC 0.000000 0 0 22 172 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 trnW tRNA trnW trnW 18052 18125 1 74 LSC 0.000000 0 0 140 98 no 0.000000 1 0.000000 0.000000 1.000000 26.100000 IGS_022 igs trnW|petG trnW-petG 18126 18257 0 132 LSC 0.005051 1 0 214 62 no 0.333333 2 0.500000 0.005051 1.000000 32.900000 petG gene petG petG 18258 18371 -1 114 LSC 0.011696 2 0 33 19 no 0.333333 2 0.500000 0.011696 1.000000 33.900000 IGS_023 igs petG|petL petG-petL 18372 18534 0 163 LSC 0.012270 3 0 17 37 no 0.333333 2 0.500000 0.012270 1.000000 34.100000 petL gene petL petL 18535 18630 -1 96 LSC 0.013889 2 0 51 21 no 0.333333 2 0.500000 0.013889 1.000000 35.400000 IGS_024 igs petL|psbE petL-psbE 18631 19653 0 1023 LSC 0.009123 14 0 8 105 no 0.333333 2 0.500000 0.009123 1.000000 37.700000 psbE gene psbE psbE 19654 19905 1 252 LSC 0.005291 2 0 32 295 no 0.333333 2 0.500000 0.005291 1.000000 30.800000 IGS_025 igs psbE|psbF psbE-psbF 19906 19914 0 9 LSC 0.000000 0 0 78 286 no 0.000000 1 0.000000 NA 1.000000 24.600000 psbF gene psbF psbF 19915 20034 1 120 LSC 0.000000 0 6 87 166 no 0.333333 2 0.500000 0.000000 1.000000 37.300000 IGS_026 igs psbF|psbL psbF-psbL 20035 20062 0 28 LSC 0.000000 0 0 207 138 no 0.000000 1 0.000000 0.000000 1.000000 29.100000 psbL gene psbL psbL 20063 20179 1 117 LSC 0.000000 0 0 235 21 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_027 igs psbL|psbJ psbL-psbJ 20180 20303 0 124 LSC 0.021505 4 0 300 95 no 0.333333 2 0.500000 0.021505 1.000000 45.800000 psbJ gene psbJ psbJ 20304 20426 1 123 LSC 0.005420 1 0 7 224 no 0.333333 2 0.500000 0.005420 1.000000 29.000000 IGS_028 igs psbJ|petA psbJ-petA 20427 21592 0 1166 LSC 0.012611 22 9 27 183 no 1.000000 3 1.000000 0.012665 0.997427 54.600000 petA gene petA petA 21593 22558 -1 966 LSC 0.005521 8 3 24 41 no 0.333333 2 0.500000 0.005538 1.000000 36.900000 IGS_029 igs petA|cemA petA-cemA 22559 22733 0 175 LSC 0.003810 1 2 43 93 no 0.333333 2 0.500000 0.003854 1.000000 32.000000 cemA gene cemA cemA 22734 23423 -1 690 LSC 0.003865 4 0 133 199 no 0.333333 2 0.500000 0.003865 1.000000 43.700000 IGS_030 igs cemA|ycf4 cemA-ycf4 23424 23777 0 354 LSC 0.005882 3 19 175 53 no 1.000000 3 1.000000 0.005970 0.960452 51.100000 ycf4 gene ycf4 ycf4 23778 24332 -1 555 LSC 0.008408 7 0 53 87 no 0.333333 2 0.500000 0.008408 1.000000 39.600000 IGS_031 igs ycf4|psaI ycf4-psaI 24333 24533 0 201 LSC 0.006633 2 0 86 9 no 1.000000 3 1.000000 0.006633 1.000000 42.400000 psaI gene psaI psaI 24534 24638 -1 105 LSC 0.006349 1 0 65 63 no 0.333333 2 0.500000 0.006349 1.000000 33.800000 IGS_032 igs psaI|accD psaI-accD 24639 24891 0 253 LSC 0.021080 8 2 95 93 no 1.000000 3 1.000000 0.021238 1.000000 58.800000 accD gene accD accD 24892 26343 -1 1452 LSC 0.006428 14 0 0 14 no 1.000000 3 1.000000 0.006428 1.000000 47.800000 IGS_033 igs accD|trnQ accD-trnQ 26344 28262 0 1919 LSC 0.009216 26 247 21 149 no 1.000000 3 1.000000 0.010439 0.998958 55.200000 trnQ tRNA trnQ trnQ 28263 28334 -1 72 LSC 0.000000 0 0 14 77 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_034 igs trnQ|psbK trnQ-psbK 28335 28819 0 485 LSC 0.019324 14 8 86 45 no 1.000000 3 1.000000 0.019567 0.995876 58.800000 psbK gene psbK psbK 28820 29005 1 186 LSC 0.007168 2 0 65 171 no 0.333333 2 0.500000 0.007168 1.000000 34.400000 IGS_035 igs psbK|psbI psbK-psbI 29006 29464 0 459 LSC 0.007988 5 8 48 176 no 1.000000 3 1.000000 0.008111 1.000000 51.400000 psbI gene psbI psbI 29465 29575 1 111 LSC 0.000000 0 0 103 65 no 0.000000 1 0.000000 0.000000 1.000000 23.600000 IGS_036 igs psbI|trnS psbI-trnS 29576 29799 0 224 LSC 0.011905 4 12 214 104 no 0.333333 2 0.500000 0.012579 1.000000 46.100000 trnS tRNA trnS trnS 29800 29879 -1 80 LSC 0.000000 0 0 12 24 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_037 igs trnS|ycf3 trnS-ycf3 29880 30158 0 279 LSC 0.007168 3 0 92 167 no 1.000000 3 1.000000 0.007168 1.000000 49.000000 ycf3 gene ycf3 ycf3 30159 32121 1 1963 LSC 0.006792 20 4 198 73 no 1.000000 3 1.000000 0.006806 1.000000 52.800000 IGS_038 igs ycf3|psaA ycf3-psaA 32122 32897 0 776 LSC 0.011168 13 7 54 152 no 1.000000 3 1.000000 0.011266 1.000000 56.000000 psaA gene psaA psaA 32898 35150 1 2253 LSC 0.002959 10 0 114 42 no 1.000000 3 1.000000 0.002959 1.000000 47.200000 IGS_039 igs psaA|psaB psaA-psaB 35151 35175 0 25 LSC 0.000000 0 0 186 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 psaB gene psaB psaB 35176 37380 1 2205 LSC 0.003326 11 0 211 34 no 1.000000 3 1.000000 0.003326 1.000000 47.000000 IGS_040 igs psaB|rps14 psaB-rps14 37381 37512 0 132 LSC 0.015152 3 0 141 223 no 0.333333 2 0.500000 0.015152 1.000000 45.200000 rps14 gene rps14 rps14 37513 37815 1 303 LSC 0.002200 1 0 23 271 no 0.333333 2 0.500000 0.002200 1.000000 28.200000 IGS_041 igs rps14|trnfM rps14-trnfM 37816 37976 0 161 LSC 0.000000 0 0 79 110 no 0.000000 1 0.000000 0.000000 1.000000 24.700000 trnfM tRNA trnfM trnfM 37977 38050 1 74 LSC 0.000000 0 0 240 36 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_042 igs trnfM|trnG trnfM-trnG 38051 38193 0 143 LSC 0.009324 2 1 300 170 no 0.333333 2 0.500000 0.009390 1.000000 44.500000 IGS_043 igs trnG|psbZ trnG-psbZ 38265 38628 0 364 LSC 0.007326 4 4 98 138 no 0.333333 2 0.500000 0.007407 1.000000 39.600000 psbZ gene psbZ psbZ 38629 38817 -1 189 LSC 0.003527 1 0 169 191 no 0.333333 2 0.500000 0.003527 1.000000 39.900000 IGS_044 igs psbZ|trnS psbZ-trnS 38818 39153 0 336 LSC 0.009921 5 0 50 170 no 1.000000 3 1.000000 0.009921 1.000000 48.300000 trnS tRNA trnS trnS 39154 39246 1 93 LSC 0.000000 0 0 48 77 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_045 igs trnS|psbD trnS-psbD 39247 40759 0 1513 LSC 0.002644 6 0 141 198 no 1.000000 3 1.000000 0.002644 1.000000 56.000000 psbD gene psbD psbD 40760 41821 -1 1062 LSC 0.003766 6 0 300 70 no 1.000000 3 1.000000 0.003766 1.000000 51.400000 IGS_046 igs psbD|trnT psbD-trnT 41822 43014 0 1193 LSC 0.010617 19 14 182 68 no 1.000000 3 1.000000 0.010728 1.000000 57.000000 trnT tRNA trnT trnT 43015 43086 -1 72 LSC 0.009259 1 0 37 17 no 0.333333 2 0.500000 0.009259 1.000000 32.200000 IGS_047 igs trnT|trnE trnT-trnE 43087 43744 0 658 LSC 0.016641 16 17 3 97 no 1.000000 3 1.000000 0.016641 0.974164 56.900000 trnE tRNA trnE trnE 43745 43817 1 73 LSC 0.000000 0 0 21 24 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_048 igs trnE|trnY trnE-trnY 43818 43877 0 60 LSC 0.011111 1 0 94 119 no 0.333333 2 0.500000 0.011111 1.000000 39.100000 trnY tRNA trnY trnY 43878 43961 1 84 LSC 0.000000 0 0 35 35 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_049 igs trnY|trnD trnY-trnD 43962 44375 0 414 LSC 0.024213 15 10 119 87 yes 1.000000 3 1.000000 0.024752 0.997585 64.500000 trnD tRNA trnD trnD 44376 44449 1 74 LSC 0.000000 0 0 8 13 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_050 igs trnD|psbM trnD-psbM 44450 44895 0 446 LSC 0.008969 6 7 82 108 no 1.000000 3 1.000000 0.009052 1.000000 54.200000 psbM gene psbM psbM 44896 45000 1 105 LSC 0.000000 0 0 21 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_051 igs psbM|petN psbM-petN 45001 46152 0 1152 LSC 0.012731 22 3 126 59 no 1.000000 3 1.000000 0.012762 1.000000 56.600000 petN gene petN petN 46153 46242 -1 90 LSC 0.007407 1 0 14 136 no 0.333333 2 0.500000 0.007407 1.000000 30.800000 IGS_052 igs petN|trnC petN-trnC 46243 46528 0 286 LSC 0.011655 5 44 30 101 no 0.333333 2 0.500000 0.013774 1.000000 39.300000 trnC tRNA trnC trnC 46529 46599 -1 71 LSC 0.000000 0 0 11 30 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_053 igs trnC|rpoB trnC-rpoB 46600 47180 0 581 LSC 0.012865 11 17 82 59 no 1.000000 3 1.000000 0.012986 0.981067 58.900000 rpoB gene rpoB rpoB 47181 50393 1 3213 LSC 0.005602 27 0 3 196 no 1.000000 3 1.000000 0.005602 1.000000 44.100000 IGS_054 igs rpoB|rpoC1 rpoB-rpoC1 50394 50419 0 26 LSC 0.000000 0 0 13 170 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 rpoC1 gene rpoC1 rpoC1 50420 53231 1 2812 LSC 0.004742 20 11 39 30 no 1.000000 3 1.000000 0.004760 1.000000 46.700000 IGS_055 igs rpoC1|rpoC2 rpoC1-rpoC2 53232 53437 0 206 LSC 0.012945 4 0 68 240 no 1.000000 3 1.000000 0.012945 1.000000 50.900000 rpoC2 gene rpoC2 rpoC2 53438 57595 1 4158 LSC 0.008337 52 2 9 68 no 1.000000 3 1.000000 0.008341 1.000000 44.900000 IGS_056 igs rpoC2|rps2 rpoC2-rps2 57596 57799 0 204 LSC 0.019608 5 3 300 300 yes 1.000000 3 1.000000 0.013169 1.000000 66.100000 rps2 gene rps2 rps2 57800 58510 1 711 LSC 0.003751 4 0 21 23 no 0.333333 2 0.500000 0.003751 1.000000 35.200000 IGS_057 igs rps2|atpI rps2-atpI 58511 58778 0 268 LSC 0.007463 3 0 93 300 no 0.333333 2 0.500000 0.007463 1.000000 36.700000 atpI gene atpI atpI 58779 59522 1 744 LSC 0.002688 3 0 37 52 no 0.333333 2 0.500000 0.002688 1.000000 35.700000 IGS_058 igs atpI|atpH atpI-atpH 59523 60886 0 1364 LSC 0.013991 28 45 294 9 no 1.000000 3 1.000000 0.013820 0.995601 57.000000 atpH gene atpH atpH 60887 61132 1 246 LSC 0.002710 1 0 160 280 no 0.333333 2 0.500000 0.002710 1.000000 38.700000 IGS_059 igs atpH|atpF atpH-atpF 61133 61196 0 64 LSC 0.000000 0 0 236 216 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 atpF gene atpF atpF 61197 62485 1 1289 LSC 0.004396 8 6 300 272 yes 1.000000 3 1.000000 0.003895 1.000000 62.000000 IGS_060 igs atpF|atpA atpF-atpA 62486 62551 0 66 LSC 0.000000 0 3 65 206 no 1.000000 3 1.000000 0.000000 0.969697 46.900000 atpA gene atpA atpA 62552 64084 1 1533 LSC 0.006958 16 0 131 189 no 1.000000 3 1.000000 0.006958 1.000000 57.900000 IGS_061 igs atpA|trnR atpA-trnR 64085 64456 0 372 LSC 0.005376 3 31 96 300 no 1.000000 3 1.000000 0.005784 1.000000 55.000000 trnR tRNA trnR trnR 64457 64528 -1 72 LSC 0.000000 0 0 78 255 no 0.000000 1 0.000000 0.000000 1.000000 24.600000 IGS_062 igs trnR|trnG trnR-trnG 64529 64838 0 310 LSC 0.002165 1 9 150 86 no 1.000000 3 1.000000 0.002215 0.993548 48.700000 trnG_part2 tRNA trnG trnG 64839 64886 -1 48 LSC 0.000000 0 0 54 38 no 0.000000 1 0.000000 0.000000 1.000000 21.600000 trnG_part1 tRNA trnG trnG 65589 65611 -1 23 LSC 0.000000 0 0 60 107 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_065 igs trnG|trnS trnG-trnS 65612 66450 0 839 LSC 0.011549 14 232 83 93 yes 1.000000 3 1.000000 0.014496 0.997616 60.600000 trnS tRNA trnS trnS 66451 66537 1 87 LSC 0.000000 0 0 15 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_066 igs trnS|rps4 trnS-rps4 66538 66746 0 209 LSC 0.025518 8 5 102 212 no 0.333333 2 0.500000 0.026144 1.000000 51.700000 rps4 gene rps4 rps4 66747 67358 -1 612 LSC 0.002179 2 0 43 20 no 0.333333 2 0.500000 0.002179 1.000000 34.100000 IGS_067 igs rps4|trnT rps4-trnT 67359 67628 0 270 LSC 0.037037 14 1 78 93 yes 1.000000 3 1.000000 0.037120 1.000000 66.900000 trnT tRNA trnT trnT 67629 67701 -1 73 LSC 0.000000 0 0 11 20 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_068 igs trnT|trnL trnT-trnL 67702 68376 0 675 LSC 0.017382 17 38 84 16 yes 1.000000 3 1.000000 0.017768 0.965926 60.800000 trnL_part1 tRNA trnL trnL 68377 68411 1 35 LSC 0.019048 1 0 23 35 no 0.333333 2 0.500000 0.019048 1.000000 38.900000 trnL_part2 tRNA trnL trnL 68905 68954 1 50 LSC 0.000000 0 0 24 77 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_071 igs trnL|trnF trnL-trnF 68955 69352 0 398 LSC 0.020101 12 5 74 111 yes 1.000000 3 1.000000 0.020346 1.000000 59.300000 trnF tRNA trnF trnF 69353 69425 1 73 LSC 0.000000 0 0 82 38 no 0.000000 1 0.000000 0.000000 1.000000 21.600000 IGS_072 igs trnF|ndhJ trnF-ndhJ 69426 70020 0 595 LSC 0.020168 18 0 155 99 yes 1.000000 3 1.000000 0.020168 1.000000 63.900000 ndhJ gene ndhJ ndhJ 70021 70497 -1 477 LSC 0.005590 4 0 17 31 no 0.333333 2 0.500000 0.005590 1.000000 33.500000 IGS_073 igs ndhJ|ndhK ndhJ-ndhK 70498 70601 0 104 LSC 0.012821 2 0 33 98 no 0.333333 2 0.500000 0.012821 1.000000 35.600000 ndhK gene ndhK ndhK 70602 71291 -1 690 LSC 0.002899 3 0 33 26 no 0.333333 2 0.500000 0.002899 1.000000 35.000000 IGS_074 igs ndhK|ndhC ndhK-ndhC 71292 71334 0 43 LSC 0.015504 1 1 300 47 no 0.333333 2 0.500000 0.015873 1.000000 41.100000 ndhC gene ndhC ndhC 71335 71697 -1 363 LSC 0.003673 2 0 16 4 no 0.333333 2 0.500000 0.003673 1.000000 29.000000 IGS_075 igs ndhC|trnV ndhC-trnV 71698 72152 0 455 LSC 0.022422 15 35 39 139 yes 1.000000 3 1.000000 0.023810 0.980220 62.900000 trnV_part2 tRNA trnV trnV 72153 72186 -1 34 LSC 0.000000 0 0 19 105 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 trnV_part1 tRNA trnV trnV 72768 72806 -1 39 LSC 0.000000 0 0 47 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_078 igs trnV|trnM trnV-trnM 72807 72998 0 192 LSC 0.019097 5 1 86 124 no 1.000000 3 1.000000 0.015661 1.000000 56.400000 trnM tRNA trnM trnM 72999 73071 1 73 LSC 0.000000 0 0 16 51 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_079 igs trnM|atpE trnM-atpE 73072 73205 0 134 LSC 0.019900 4 0 89 1 no 0.333333 2 0.500000 0.019900 1.000000 37.800000 atpE gene atpE atpE 73206 73586 -1 381 LSC 0.006999 4 0 20 23 no 0.333333 2 0.500000 0.006999 1.000000 32.600000 IGS_080 igs atpE|atpB atpE-atpB 73587 73603 0 17 LSC 0.000000 0 0 281 6 no 0.000000 1 0.000000 NA 1.000000 19.200000 atpB gene atpB atpB 73604 75100 -1 1497 LSC 0.004453 10 0 298 276 no 0.333333 2 0.500000 0.004453 1.000000 49.100000 IGS_081 igs atpB|rbcL atpB-rbcL 75101 75899 0 799 LSC 0.009595 11 7 122 95 no 1.000000 3 1.000000 0.008835 1.000000 57.900000 rbcL gene rbcL rbcL 75900 77327 1 1428 LSC 0.003735 8 5 104 67 no 1.000000 3 1.000000 0.003747 1.000000 51.600000 IGS_082 igs rbcL|trnK rbcL-trnK 77328 78180 0 853 LSC 0.016647 21 98 108 47 yes 1.000000 3 1.000000 0.018486 0.985932 62.600000 trnK_part1 tRNA trnK trnK 78181 78218 1 38 LSC 0.000000 0 0 6 9 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 matK gene matK matK 78991 80517 1 1527 LSC 0.012224 28 0 28 129 no 1.000000 3 1.000000 0.012224 1.000000 53.600000 IGS_085 igs matK|trnK matK-trnK 80518 80841 0 324 LSC 0.012346 6 6 18 37 no 0.333333 2 0.500000 0.012579 1.000000 36.800000 trnK_part2 tRNA trnK trnK 80842 80876 1 35 LSC 0.000000 0 0 54 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_086 igs trnK|psbA trnK-psbA 80877 81159 0 283 LSC 0.014134 6 0 89 300 no 1.000000 3 1.000000 0.014134 1.000000 53.200000 psbA gene psbA psbA 81160 82221 1 1062 LSC 0.001255 2 0 10 33 no 0.333333 2 0.500000 0.001255 1.000000 32.800000 IGS_087 igs psbA|trnH psbA-trnH 82222 82565 0 344 LSC 0.028230 13 94 300 94 yes 1.000000 3 1.000000 0.034059 0.892442 63.800000 trnH tRNA trnH trnH 82566 82640 1 75 LSC 0.000000 0 0 97 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_088 igs trnH|rpl2 trnH-rpl2 82641 82755 0 115 LSC 0.023188 4 1 172 300 yes 1.000000 3 1.000000 0.023290 1.000000 66.200000 rpl2 gene rpl2 rpl2 82756 84250 -1 1495 IRb 0.003122 7 0 57 300 no 1.000000 3 1.000000 0.003122 1.000000 50.000000 IGS_089 igs rpl2|rpl23 rpl2-rpl23 84251 84268 0 18 IRb 0.000000 0 0 28 300 no 0.000000 1 0.000000 NA 1.000000 20.900000 rpl23 gene rpl23 rpl23 84269 84550 -1 282 IRb 0.000000 0 0 46 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_090 igs rpl23|trnI rpl23-trnI 84551 85000 0 450 IRb 0.001481 1 0 300 234 no 0.333333 2 0.500000 0.001481 1.000000 44.100000 IGS_091 igs trnI|ycf2 trnI-ycf2 85075 85174 0 100 IRb 0.000000 0 0 300 60 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 ycf2 gene ycf2 ycf2 85175 92170 1 6996 IRb 0.002962 31 24 300 193 no 1.000000 3 1.000000 0.002964 0.997427 54.200000 IGS_092 igs ycf2|trnL ycf2-trnL 92171 92758 0 588 IRb 0.002268 2 2 61 300 no 0.333333 2 0.500000 0.002275 1.000000 37.400000 IGS_093 igs trnL|ndhB trnL-ndhB 92840 93421 0 582 IRb 0.002291 2 14 300 209 no 0.333333 2 0.500000 0.002347 1.000000 50.100000 ndhB gene ndhB ndhB 93422 95578 -1 2157 IRb 0.000927 3 0 240 300 no 1.000000 3 1.000000 0.000927 1.000000 58.000000 IGS_094 igs ndhB|rps7 ndhB-rps7 95579 95957 0 379 IRb 0.000000 0 0 125 153 no 0.000000 1 0.000000 0.000000 1.000000 29.800000 rps7 gene rps7 rps7 95958 96425 -1 468 IRb 0.001425 1 0 300 300 no 0.333333 2 0.500000 0.001425 1.000000 44.400000 IGS_095 igs rps7|trnV rps7-trnV 96426 99009 0 2584 IRb 0.003354 13 30 300 276 no 0.333333 2 0.500000 0.003393 1.000000 47.500000 IGS_096 igs trnV|16S ribosomal RNA trnV-16S ribosomal RNA 99082 99302 0 221 IRb 0.003017 1 0 152 300 no 0.333333 2 0.500000 0.003017 1.000000 38.300000 16S ribosomal RNA rRNA 16S ribosomal RNA 16S ribosomal RNA 99303 100793 1 1491 IRb 0.000894 2 0 16 184 no 0.333333 2 0.500000 0.000894 1.000000 33.000000 IGS_097 igs 16S ribosomal RNA|trnI 16S ribosomal RNA-trnI 100794 101086 0 293 IRb 0.002275 1 0 300 300 no 0.333333 2 0.500000 0.002275 1.000000 41.500000 trnI_part1 tRNA trnI trnI 101087 101123 1 37 IRb 0.000000 0 0 108 300 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 trnI_part2 tRNA trnI trnI 102085 102119 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_100 igs trnI|trnA trnI-trnA 102120 102178 0 59 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 102179 102216 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 103042 103076 1 35 IRb 0.000000 0 0 300 10 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_103 igs trnA|23S ribosomal RNA trnA-23S ribosomal RNA 103077 103228 0 152 IRb 0.008772 2 0 300 300 no 0.333333 2 0.500000 0.008772 1.000000 45.600000 23S ribosomal RNA rRNA 23S ribosomal RNA 23S ribosomal RNA 103229 106043 1 2815 IRb 0.000000 0 0 2 243 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_104 igs 23S ribosomal RNA|4.5S ribosomal RNA 23S ribosomal RNA-4.5S ribosomal RNA 106044 106141 0 98 IRb 0.000000 0 0 300 145 no 0.000000 1 0.000000 0.000000 1.000000 29.600000 4.5S ribosomal RNA rRNA 4.5S ribosomal RNA 4.5S ribosomal RNA 106142 106245 1 104 IRb 0.000000 0 0 300 41 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_105 igs 4.5S ribosomal RNA|5S ribosomal RNA 4.5S ribosomal RNA-5S ribosomal RNA 106246 106486 0 241 IRb 0.005533 2 2 300 300 no 0.333333 2 0.500000 0.005579 1.000000 44.500000 5S ribosomal RNA rRNA 5S ribosomal RNA 5S ribosomal RNA 106487 106607 1 121 IRb 0.000000 0 0 126 234 no 0.000000 1 0.000000 0.000000 1.000000 28.200000 IGS_106 igs 5S ribosomal RNA|trnR 5S ribosomal RNA-trnR 106608 106862 0 255 IRb 0.002614 1 0 247 160 no 0.333333 2 0.500000 0.002614 1.000000 38.700000 trnR tRNA trnR trnR 106863 106936 1 74 IRb 0.000000 0 0 20 86 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_107 igs trnR|trnN trnR-trnN 106937 107506 0 570 IRb 0.002339 2 2 94 99 no 0.333333 2 0.500000 0.002347 1.000000 39.600000 trnN tRNA trnN trnN 107507 107578 -1 72 IRb 0.000000 0 0 300 27 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 IGS_108 igs trnN|ycf1 trnN-ycf1 107579 107958 0 380 IRb 0.010526 6 2 300 185 no 0.333333 2 0.500000 0.010582 1.000000 47.900000 ycf1 gene ycf1 ycf1 107959 113289 1 5331 SSC 0.016142 128 42 17 1 yes 1.000000 3 1.000000 0.016068 0.995498 48.600000 IGS_109 igs ycf1|rps15 ycf1-rps15 113290 113718 0 429 SSC 0.024087 15 21 48 59 yes 1.000000 3 1.000000 0.023575 1.000000 64.600000 rps15 gene rps15 rps15 113719 113994 1 276 SSC 0.004831 2 0 18 6 no 0.333333 2 0.500000 0.004831 1.000000 28.500000 IGS_110 igs rps15|ndhH rps15-ndhH 113995 114108 0 114 SSC 0.011696 2 1 5 104 no 0.333333 2 0.500000 0.011799 1.000000 33.800000 ndhH gene ndhH ndhH 114109 115290 1 1182 SSC 0.009024 16 0 102 15 no 1.000000 3 1.000000 0.009024 1.000000 50.600000 IGS_111 igs ndhH|ndhA ndhH-ndhA 115291 115291 0 1 SSC 0.000000 0 0 108 14 no 0.000000 1 0.000000 NA 1.000000 19.800000 ndhA gene ndhA ndhA 115292 117540 1 2249 SSC 0.011274 38 7 109 5 no 1.000000 3 1.000000 0.011298 0.999111 50.100000 IGS_112 igs ndhA|ndhI ndhA-ndhI 117541 117611 0 71 SSC 0.018779 2 0 135 65 no 1.000000 3 1.000000 0.018779 1.000000 54.300000 ndhI gene ndhI ndhI 117612 118097 1 486 SSC 0.006859 5 1 12 4 no 0.333333 2 0.500000 0.006873 1.000000 33.800000 IGS_113 igs ndhI|ndhG ndhI-ndhG 118098 118458 0 361 SSC 0.036934 20 1 87 49 yes 1.000000 3 1.000000 0.037034 1.000000 66.300000 ndhG gene ndhG ndhG 118459 118989 1 531 SSC 0.003766 3 0 27 41 no 0.333333 2 0.500000 0.003766 1.000000 34.200000 IGS_114 igs ndhG|ndhE ndhG-ndhE 118990 119230 0 241 SSC 0.016878 6 4 146 85 no 1.000000 3 1.000000 0.016878 0.983402 56.100000 ndhE gene ndhE ndhE 119231 119536 1 306 SSC 0.004357 2 0 12 22 no 0.333333 2 0.500000 0.004357 1.000000 28.800000 IGS_115 igs ndhE|psaC ndhE-psaC 119537 119800 0 264 SSC 0.015152 6 0 52 260 no 0.333333 2 0.500000 0.015152 1.000000 38.600000 psaC gene psaC psaC 119801 120046 1 246 SSC 0.000000 0 0 34 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_116 igs psaC|ccsA psaC-ccsA 120047 121962 0 1916 SSC 0.008003 23 4 280 153 no 1.000000 3 1.000000 0.008018 1.000000 59.700000 ccsA gene ccsA ccsA 121963 122925 -1 963 SSC 0.006923 10 0 4 110 no 1.000000 3 1.000000 0.006923 1.000000 48.500000 IGS_117 igs ccsA|trnL ccsA-trnL 122926 123021 0 96 SSC 0.000000 0 1 131 14 no 0.333333 2 0.500000 0.000000 1.000000 27.200000 IGS_118 igs trnL|rpl32 trnL-rpl32 123102 123408 0 307 SSC 0.010858 5 0 65 18 no 1.000000 3 1.000000 0.010858 1.000000 45.900000 rpl32 gene rpl32 rpl32 123409 123555 -1 147 SSC 0.036281 8 0 133 5 no 0.333333 2 0.500000 0.036281 1.000000 48.500000 IGS_119 igs rpl32|ndhF rpl32-ndhF 123556 124305 0 750 SSC 0.016000 18 21 20 70 yes 1.000000 3 1.000000 0.016438 1.000000 58.700000 ndhF gene ndhF ndhF 124306 126558 1 2253 SSC 0.007398 25 8 43 65 no 1.000000 3 1.000000 0.007422 1.000000 50.500000 IGS_120 igs ndhF|trnN ndhF-trnN 126559 127996 0 1438 IRa 0.011173 24 30 13 300 no 1.000000 3 1.000000 0.011364 0.995828 54.100000 trnN tRNA trnN trnN 127997 128068 1 72 IRa 0.000000 0 0 27 300 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 IGS_121 igs trnN|trnR trnN-trnR 128069 128638 0 570 IRa 0.002339 2 2 99 94 no 0.333333 2 0.500000 0.002347 1.000000 39.600000 trnR tRNA trnR trnR 128639 128712 -1 74 IRa 0.000000 0 0 86 20 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_122 igs trnR|5S ribosomal RNA trnR-5S ribosomal RNA 128713 128967 0 255 IRa 0.002614 1 0 160 249 no 0.333333 2 0.500000 0.002614 1.000000 38.700000 5S ribosomal RNA rRNA 5S ribosomal RNA 5S ribosomal RNA 128968 129088 -1 121 IRa 0.000000 0 0 234 128 no 0.000000 1 0.000000 0.000000 1.000000 28.300000 IGS_123 igs 5S ribosomal RNA|4.5S ribosomal RNA 5S ribosomal RNA-4.5S ribosomal RNA 129089 129329 0 241 IRa 0.005533 2 2 300 300 no 0.333333 2 0.500000 0.005579 1.000000 44.500000 4.5S ribosomal RNA rRNA 4.5S ribosomal RNA 4.5S ribosomal RNA 129330 129433 -1 104 IRa 0.000000 0 0 41 300 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_124 igs 4.5S ribosomal RNA|23S ribosomal RNA 4.5S ribosomal RNA-23S ribosomal RNA 129434 129531 0 98 IRa 0.000000 0 0 145 300 no 0.000000 1 0.000000 0.000000 1.000000 29.600000 23S ribosomal RNA rRNA 23S ribosomal RNA 23S ribosomal RNA 129532 132346 -1 2815 IRa 0.000000 0 0 243 2 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_125 igs 23S ribosomal RNA|trnA 23S ribosomal RNA-trnA 132347 132498 0 152 IRa 0.008772 2 0 300 300 no 0.333333 2 0.500000 0.008772 1.000000 45.600000 trnA_part2 tRNA trnA trnA 132499 132533 -1 35 IRa 0.000000 0 0 10 300 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 trnA_part1 tRNA trnA trnA 133359 133396 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_128 igs trnA|trnI trnA-trnI 133397 133455 0 59 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 133456 133490 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 134452 134488 -1 37 IRa 0.000000 0 0 300 108 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 IGS_131 igs trnI|16S ribosomal RNA trnI-16S ribosomal RNA 134489 134781 0 293 IRa 0.002275 1 0 300 300 no 0.333333 2 0.500000 0.002275 1.000000 41.500000 16S ribosomal RNA rRNA 16S ribosomal RNA 16S ribosomal RNA 134782 136272 -1 1491 IRa 0.000894 2 0 184 16 no 0.333333 2 0.500000 0.000894 1.000000 33.000000 IGS_132 igs 16S ribosomal RNA|trnV 16S ribosomal RNA-trnV 136273 136493 0 221 IRa 0.003017 1 0 300 152 no 0.333333 2 0.500000 0.003017 1.000000 38.300000 IGS_133 igs trnV|rps12 trnV-rps12 136566 138307 0 1742 IRa 0.004975 13 30 276 300 no 0.333333 2 0.500000 0.005062 1.000000 50.900000 rps12_part2 gene rps12 rps12 138308 138550 1 243 IRa 0.000000 0 0 3 300 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_134 igs rps12|rps7 rps12-rps7 138551 139149 0 599 IRa 0.000000 0 0 246 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 rps7 gene rps7 rps7 139150 139617 1 468 IRa 0.001425 1 0 300 300 no 0.333333 2 0.500000 0.001425 1.000000 44.400000 IGS_135 igs rps7|ndhB rps7-ndhB 139618 139996 0 379 IRa 0.000000 0 0 153 125 no 0.000000 1 0.000000 0.000000 1.000000 29.800000 ndhB gene ndhB ndhB 139997 142153 1 2157 IRa 0.000927 3 0 300 240 no 1.000000 3 1.000000 0.000927 1.000000 58.000000 IGS_136 igs ndhB|trnL ndhB-trnL 142154 142735 0 582 IRa 0.002291 2 14 209 300 no 0.333333 2 0.500000 0.002347 1.000000 50.100000 IGS_137 igs trnL|ycf2 trnL-ycf2 142817 143404 0 588 IRa 0.002268 2 2 300 61 no 0.333333 2 0.500000 0.002275 1.000000 37.400000 ycf2 gene ycf2 ycf2 143405 150400 -1 6996 IRa 0.003153 33 24 193 300 no 1.000000 3 1.000000 0.003155 0.997427 54.300000 IGS_138 igs ycf2|trnI ycf2-trnI 150401 150500 0 100 IRa 0.000000 0 0 60 300 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_139 igs trnI|rpl23 trnI-rpl23 150575 151024 0 450 IRa 0.001481 1 0 234 300 no 0.333333 2 0.500000 0.001481 1.000000 44.100000 rpl23 gene rpl23 rpl23 151025 151306 1 282 IRa 0.000000 0 0 26 46 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_140 igs rpl23|rpl2 rpl23-rpl2 151307 151324 0 18 IRa 0.000000 0 0 300 28 no 0.000000 1 0.000000 NA 1.000000 20.900000 rpl2 gene rpl2 rpl2 151325 152819 1 1495 IRa 0.003122 7 0 300 169 no 1.000000 3 1.000000 0.003122 1.000000 58.400000 IGS_141 igs rpl2|rps19 rpl2-rps19 152820 8 0 65 IRa 0.000000 0 2 300 104 no 1.000000 3 1.000000 0.000000 1.000000 48.800000