feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 18 91 1 74 LSC 0.000000 0 0 46 85 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 IGS_001 igs trnH|psbA trnH-psbA 92 536 0 445 LSC 0.011386 11 5 120 300 yes 0.666667 5 0.800000 0.011440 1.000000 52.800000 psbA gene psbA psbA 537 1598 -1 1062 LSC 0.000565 1 0 125 46 no 0.000000 2 0.000000 0.000565 1.000000 28.800000 IGS_002 igs psbA|trnK psbA-trnK 1599 1834 0 236 LSC 0.009605 5 5 300 125 no 0.500000 4 0.750000 0.009088 1.000000 47.000000 trnK_part1 tRNA trnK trnK 1835 1869 1 35 LSC 0.000000 0 0 39 90 no 0.000000 1 0.000000 0.000000 1.000000 21.700000 matK gene matK matK 2137 3657 -1 1521 LSC 0.005829 19 0 62 9 no 0.666667 5 0.800000 0.005829 1.000000 42.300000 IGS_005 igs matK|trnK matK-trnK 3658 4363 0 706 LSC 0.000944 2 0 210 56 no 0.166667 2 0.500000 0.000944 1.000000 33.100000 trnK_part2 tRNA trnK trnK 4364 4400 1 37 LSC 0.000000 0 0 300 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_006 igs trnK|rps16 trnK-rps16 4401 5288 0 888 LSC 0.006607 16 12 300 300 yes 0.500000 4 0.750000 0.006658 0.996622 56.100000 rps16 gene rps16 rps16 5289 6436 -1 1148 LSC 0.001916 5 7 77 25 no 0.500000 4 0.750000 0.001746 1.000000 38.400000 IGS_007 igs rps16|trnQ rps16-trnQ 6437 8091 0 1655 LSC 0.007291 30 17 89 23 yes 0.666667 5 0.800000 0.007113 0.992749 45.500000 trnQ tRNA trnQ trnQ 8092 8163 1 72 LSC 0.004630 1 0 18 93 no 0.166667 2 0.500000 0.004630 1.000000 27.000000 IGS_008 igs trnQ|psbK trnQ-psbK 8164 8491 0 328 LSC 0.004878 4 0 48 68 no 0.166667 3 0.333333 0.004878 1.000000 29.800000 psbK gene psbK psbK 8492 8677 1 186 LSC 0.006452 2 0 55 62 no 0.500000 4 0.750000 0.006452 1.000000 36.500000 IGS_009 igs psbK|psbI psbK-psbI 8678 9089 0 412 LSC 0.006149 6 6 53 141 no 0.166667 3 0.333333 0.005733 0.992718 34.300000 psbI gene psbI psbI 9090 9200 1 111 LSC 0.000000 0 0 26 30 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_010 igs psbI|trnS psbI-trnS 9201 9317 0 117 LSC 0.011966 3 0 137 158 no 0.333333 3 0.666667 0.011966 1.000000 43.900000 trnS tRNA trnS trnS 9318 9405 1 88 LSC 0.000000 0 0 32 70 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_011 igs trnS|trnG trnS-trnG 9406 10101 0 696 LSC 0.006897 12 7 120 95 yes 0.666667 5 0.800000 0.006930 1.000000 51.100000 trnG_part1 tRNA trnG trnG 10102 10124 1 23 LSC 0.000000 0 0 15 72 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 trnG_part2 tRNA trnG trnG 10803 10850 1 48 LSC 0.000000 0 0 39 278 no 0.000000 1 0.000000 0.000000 1.000000 21.700000 IGS_014 igs trnG|trnR trnG-trnR 10851 11013 0 163 LSC 0.000000 0 0 87 115 no 0.000000 1 0.000000 0.000000 1.000000 25.300000 trnR tRNA trnR trnR 11014 11088 1 75 LSC 0.000000 0 0 250 40 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_015 igs trnR|atpA trnR-atpA 11089 11200 0 112 LSC 0.010714 2 8 300 216 no 0.166667 3 0.333333 0.010989 1.000000 49.800000 atpA gene atpA atpA 11201 12724 -1 1524 LSC 0.001225 5 0 65 32 no 0.500000 4 0.750000 0.001225 1.000000 37.700000 IGS_016 igs atpA|atpF atpA-atpF 12725 12788 0 64 LSC 0.009375 1 1 173 114 no 0.166667 3 0.333333 0.009425 1.000000 38.500000 atpF gene atpF atpF 12789 14045 -1 1257 LSC 0.003553 8 2 31 31 no 0.500000 4 0.750000 0.003556 1.000000 39.300000 IGS_017 igs atpF|atpH atpF-atpH 14046 14414 0 369 LSC 0.007588 6 11 253 120 no 0.666667 5 0.800000 0.007808 0.972900 50.100000 atpH gene atpH atpH 14415 14660 -1 246 LSC 0.002168 1 0 20 68 no 0.000000 2 0.000000 0.002168 1.000000 21.700000 IGS_018 igs atpH|atpI atpH-atpI 14661 15728 0 1068 LSC 0.008801 25 301 125 12 yes 0.666667 5 0.800000 0.009956 1.000000 49.900000 atpI gene atpI atpI 15729 16472 -1 744 LSC 0.000896 2 0 43 21 no 0.333333 3 0.666667 0.000896 1.000000 33.600000 IGS_019 igs atpI|rps2 atpI-rps2 16473 16694 0 222 LSC 0.003003 2 0 300 41 no 0.333333 3 0.666667 0.003003 1.000000 30.600000 rps2 gene rps2 rps2 16695 17405 -1 711 LSC 0.000844 1 0 48 11 no 0.000000 2 0.000000 0.000844 1.000000 26.400000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 17406 17610 0 205 LSC 0.012683 6 0 300 40 no 0.500000 4 0.750000 0.012683 1.000000 40.500000 rpoC2 gene rpoC2 rpoC2 17611 21795 -1 4185 LSC 0.002389 22 0 143 51 no 1.000000 6 1.000000 0.002389 1.000000 44.300000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 21796 21940 0 145 LSC 0.005977 2 0 84 54 no 0.166667 3 0.333333 0.005977 1.000000 30.300000 rpoC1 gene rpoC1 rpoC1 21941 24761 -1 2821 LSC 0.001253 9 0 26 300 no 0.500000 4 0.750000 0.001253 1.000000 34.500000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 24762 24766 0 5 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpoB gene rpoB rpoB 24767 27979 -1 3213 LSC 0.000705 6 0 300 52 no 0.500000 4 0.750000 0.000705 1.000000 35.400000 IGS_023 igs rpoB|trnC rpoB-trnC 27980 29187 0 1208 LSC 0.005353 13 28 170 129 yes 0.666667 5 0.800000 0.005391 1.000000 53.700000 trnC tRNA trnC trnC 29188 29258 1 71 LSC 0.000000 0 0 282 58 no 0.000000 1 0.000000 0.000000 1.000000 23.100000 IGS_024 igs trnC|petN trnC-petN 29259 30028 0 770 LSC 0.003723 7 17 300 259 yes 0.500000 4 0.750000 0.003768 1.000000 54.800000 petN gene petN petN 30029 30118 1 90 LSC 0.000000 0 0 183 169 no 0.000000 1 0.000000 0.000000 1.000000 31.400000 IGS_025 igs petN|psbM petN-psbM 30119 31282 0 1164 LSC 0.003436 9 9 273 108 no 0.666667 5 0.800000 0.003444 1.000000 49.000000 psbM gene psbM psbM 31283 31387 -1 105 LSC 0.000000 0 0 9 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_026 igs psbM|trnD psbM-trnD 31388 32027 0 640 LSC 0.004896 7 1 114 103 no 0.500000 4 0.750000 0.004900 1.000000 45.900000 trnD tRNA trnD trnD 32028 32101 1 74 LSC 0.000000 0 0 45 29 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_027 igs trnD|trnY trnD-trnY 32102 32216 0 115 LSC 0.007536 2 0 119 94 no 0.333333 3 0.666667 0.007536 1.000000 37.600000 trnY tRNA trnY trnY 32217 32300 1 84 LSC 0.000000 0 0 74 10 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_028 igs trnY|trnE trnY-trnE 32301 32359 0 59 LSC 0.010169 1 0 158 87 no 0.000000 2 0.000000 0.010169 1.000000 32.000000 trnE tRNA trnE trnE 32360 32432 1 73 LSC 0.000000 0 0 48 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_029 igs trnE|trnT trnE-trnT 32433 33211 0 779 LSC 0.009499 17 7 121 97 yes 0.666667 5 0.800000 0.009566 0.998716 52.800000 trnT tRNA trnT trnT 33212 33283 1 72 LSC 0.000000 0 0 10 25 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_030 igs trnT|psbD trnT-psbD 33284 34582 0 1299 LSC 0.005697 17 3 82 239 no 0.666667 5 0.800000 0.005703 1.000000 48.100000 psbD gene psbD psbD 34583 35644 1 1062 LSC 0.001193 3 0 86 255 no 0.166667 3 0.333333 0.001193 1.000000 35.500000 psbC gene psbC psbC 35592 37013 1 1422 LSC 0.000656 2 0 133 46 no 0.166667 3 0.333333 0.000656 1.000000 32.000000 IGS_032 igs psbC|trnS psbC-trnS 37014 37253 0 240 LSC 0.001389 1 5 87 105 no 0.500000 4 0.750000 0.001414 0.995833 38.200000 trnS tRNA trnS trnS 37254 37346 1 93 LSC 0.000000 0 0 193 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_033 igs trnS|psbZ trnS-psbZ 37347 37687 0 341 LSC 0.001955 2 1 286 107 no 0.500000 4 0.750000 0.001959 1.000000 39.000000 psbZ gene psbZ psbZ 37688 37876 1 189 LSC 0.001764 1 0 123 41 no 0.166667 2 0.500000 0.001764 1.000000 26.400000 IGS_034 igs psbZ|trnG psbZ-trnG 37877 38165 0 289 LSC 0.016378 10 5 81 84 yes 0.500000 4 0.750000 0.016062 1.000000 47.900000 IGS_035 igs trnG|trnM trnG-trnM 38237 38393 0 157 LSC 0.014013 5 0 87 78 no 0.500000 4 0.750000 0.014013 1.000000 44.300000 trnM tRNA trnM trnM 38394 38467 1 74 LSC 0.000000 0 0 2 4 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_036 igs trnM|rps14 trnM-rps14 38468 38611 0 144 LSC 0.002315 1 0 76 179 no 0.166667 2 0.500000 0.002315 1.000000 29.500000 rps14 gene rps14 rps14 38612 38914 -1 303 LSC 0.001980 1 0 139 300 no 0.000000 2 0.000000 0.001980 1.000000 30.500000 IGS_037 igs rps14|psaB rps14-psaB 38915 39036 0 122 LSC 0.000000 0 0 123 255 no 0.000000 1 0.000000 0.000000 1.000000 28.000000 psaB gene psaB psaB 39037 41241 -1 2205 LSC 0.000937 4 0 245 118 no 0.333333 4 0.500000 0.000937 1.000000 39.300000 IGS_038 igs psaB|psaA psaB-psaA 41242 41266 0 25 LSC 0.000000 0 0 300 93 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 psaA gene psaA psaA 41267 43519 -1 2253 LSC 0.001657 8 0 300 300 no 0.500000 4 0.750000 0.001657 1.000000 49.000000 IGS_039 igs psaA|ycf3 psaA-ycf3 43520 44255 0 736 LSC 0.004076 6 1 300 267 yes 0.500000 4 0.750000 0.004080 1.000000 52.400000 ycf3 gene ycf3 ycf3 44256 46218 -1 1963 LSC 0.002955 15 12 92 121 no 0.666667 5 0.800000 0.002969 0.997962 46.400000 IGS_040 igs ycf3|trnS ycf3-trnS 46219 47003 0 785 LSC 0.003227 6 3 11 221 no 0.166667 3 0.333333 0.003236 1.000000 31.800000 trnS tRNA trnS trnS 47004 47094 1 91 LSC 0.000000 0 0 72 130 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 IGS_041 igs trnS|rps4 trnS-rps4 47095 47414 0 320 LSC 0.001042 1 0 163 107 no 0.166667 2 0.500000 0.001042 1.000000 31.200000 rps4 gene rps4 rps4 47415 48020 -1 606 LSC 0.001650 3 0 189 27 no 0.333333 3 0.666667 0.001650 1.000000 34.600000 IGS_042 igs rps4|trnT rps4-trnT 48021 48343 0 323 LSC 0.008875 6 5 236 173 no 0.500000 4 0.750000 0.008952 1.000000 49.700000 trnT tRNA trnT trnT 48344 48416 1 73 LSC 0.000000 0 0 19 100 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_043 igs trnT|trnL trnT-trnL 48417 49087 0 671 LSC 0.004570 8 2 92 300 no 0.666667 5 0.800000 0.004578 1.000000 48.300000 trnL_part1 tRNA trnL trnL 49088 49122 1 35 LSC 0.000000 0 0 118 300 no 0.000000 1 0.000000 0.000000 1.000000 27.600000 trnL_part2 tRNA trnL trnL 49597 49646 1 50 LSC 0.000000 0 0 300 116 no 0.000000 1 0.000000 0.000000 1.000000 27.400000 IGS_046 igs trnL|trnF trnL-trnF 49647 49985 0 339 LSC 0.004326 3 0 300 95 no 0.166667 3 0.333333 0.004326 1.000000 32.900000 trnF tRNA trnF trnF 49986 50058 1 73 LSC 0.000000 0 0 14 22 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_047 igs trnF|ndhJ trnF-ndhJ 50059 50730 0 672 LSC 0.005952 10 8 87 300 no 0.500000 4 0.750000 0.005991 1.000000 46.900000 ndhJ gene ndhJ ndhJ 50731 51207 -1 477 LSC 0.003075 3 0 68 180 no 0.500000 4 0.750000 0.003075 1.000000 39.100000 IGS_048 igs ndhJ|psbG ndhJ-psbG 51208 51317 0 110 LSC 0.000000 0 0 77 70 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 psbG gene psbG psbG 51318 52028 -1 711 LSC 0.003000 5 33 187 122 yes 1.000000 6 1.000000 0.003142 0.953586 59.400000 IGS_049 igs psbG|ndhC psbG-ndhC 52029 52081 0 53 LSC 0.000000 0 0 122 69 no 0.000000 1 0.000000 0.000000 1.000000 23.900000 ndhC gene ndhC ndhC 52082 52444 -1 363 LSC 0.003489 3 0 175 45 no 0.500000 4 0.750000 0.003489 1.000000 35.400000 IGS_050 igs ndhC|trnV ndhC-trnV 52445 53553 0 1109 LSC 0.005290 16 76 24 206 no 0.666667 5 0.800000 0.005345 1.000000 49.400000 trnV_part1 tRNA trnV trnV 53554 53587 1 34 LSC 0.000000 0 0 39 172 no 0.000000 1 0.000000 0.000000 1.000000 21.700000 trnV_part2 tRNA trnV trnV 54161 54198 1 38 LSC 0.000000 0 0 129 74 no 0.000000 1 0.000000 0.000000 1.000000 24.300000 IGS_053 igs trnV|trnM trnV-trnM 54199 54378 0 180 LSC 0.002963 1 0 167 292 no 0.000000 2 0.000000 0.002963 1.000000 33.300000 trnM tRNA trnM trnM 54379 54451 1 73 LSC 0.000000 0 0 105 219 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 IGS_054 igs trnM|atpE trnM-atpE 54452 54655 0 204 LSC 0.000000 0 0 178 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 atpE gene atpE atpE 54656 55057 -1 402 LSC 0.003814 3 0 300 209 no 0.166667 3 0.333333 0.003814 1.000000 41.600000 atpB gene atpB atpB 55054 56550 -1 1497 LSC 0.000980 3 0 238 9 no 0.166667 3 0.333333 0.000980 1.000000 29.500000 IGS_056 igs atpB|rbcL atpB-rbcL 56551 57334 0 784 LSC 0.015136 22 1 256 300 yes 0.333333 4 0.500000 0.015144 1.000000 56.700000 rbcL gene rbcL rbcL 57335 58762 1 1428 LSC 0.001120 4 0 228 194 no 0.500000 4 0.750000 0.001120 1.000000 49.800000 IGS_057 igs rbcL|accD rbcL-accD 58763 59424 0 662 LSC 0.005438 9 8 31 52 no 0.500000 4 0.750000 0.005267 1.000000 42.300000 accD gene accD accD 59425 60930 1 1506 LSC 0.003276 11 0 26 6 no 0.666667 5 0.800000 0.003276 1.000000 40.300000 IGS_058 igs accD|psaI accD-psaI 60931 61457 0 527 LSC 0.008855 11 0 7 32 no 0.666667 5 0.800000 0.008855 1.000000 43.100000 psaI gene psaI psaI 61458 61568 1 111 LSC 0.005405 1 0 30 34 no 0.000000 2 0.000000 0.005405 1.000000 24.600000 IGS_059 igs psaI|ycf4 psaI-ycf4 61569 62007 0 439 LSC 0.004708 4 1 78 300 no 0.166667 3 0.333333 0.004712 1.000000 34.200000 ycf4 gene ycf4 ycf4 62008 62562 1 555 LSC 0.000601 1 0 10 245 no 0.166667 2 0.500000 0.000601 1.000000 28.400000 IGS_060 igs ycf4|cemA ycf4-cemA 62563 62902 0 340 LSC 0.000980 1 7 46 27 no 0.166667 3 0.333333 0.001001 0.997059 27.900000 cemA gene cemA cemA 62903 63592 1 690 LSC 0.004155 7 0 94 90 no 0.500000 4 0.750000 0.004155 1.000000 44.300000 IGS_061 igs cemA|petA cemA-petA 63593 63819 0 227 LSC 0.002937 2 0 75 176 no 0.333333 3 0.666667 0.002937 1.000000 33.000000 petA gene petA petA 63820 64782 1 963 LSC 0.003184 7 0 120 20 no 0.500000 4 0.750000 0.003184 1.000000 38.200000 IGS_062 igs petA|psbJ petA-psbJ 64783 65733 0 951 LSC 0.006660 17 2 24 300 yes 1.000000 6 1.000000 0.006670 0.998948 51.000000 psbJ gene psbJ psbJ 65734 65856 -1 123 LSC 0.000000 0 0 31 221 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_063 igs psbJ|psbL psbJ-psbL 65857 65989 0 133 LSC 0.000000 0 0 154 88 no 0.000000 1 0.000000 0.000000 1.000000 25.400000 psbL gene psbL psbL 65990 66106 -1 117 LSC 0.002849 1 0 287 20 no 0.166667 2 0.500000 0.002849 1.000000 25.700000 IGS_064 igs psbL|psbF psbL-psbF 66107 66128 0 22 LSC 0.015152 1 0 28 66 no 0.166667 2 0.500000 0.015152 1.000000 36.500000 psbF gene psbF psbF 66129 66248 -1 120 LSC 0.010000 2 0 1 52 no 0.000000 2 0.000000 0.010000 1.000000 25.400000 IGS_065 igs psbF|psbE psbF-psbE 66249 66262 0 14 LSC 0.000000 0 0 44 38 no 0.000000 1 0.000000 NA 1.000000 21.600000 psbE gene psbE psbE 66263 66514 -1 252 LSC 0.002646 2 0 58 67 no 0.333333 3 0.666667 0.002646 1.000000 31.500000 IGS_066 igs psbE|petL psbE-petL 66515 67677 0 1163 LSC 0.005102 14 3 44 57 no 0.666667 5 0.800000 0.005109 0.999140 44.900000 petL gene petL petL 67678 67773 1 96 LSC 0.006944 2 0 88 4 no 0.166667 2 0.500000 0.006944 1.000000 27.900000 IGS_067 igs petL|petG petL-petG 67774 67943 0 170 LSC 0.009020 4 2 1 220 no 0.500000 4 0.750000 0.009099 0.994118 36.500000 petG gene petG petG 67944 68057 1 114 LSC 0.000000 0 0 3 106 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_068 igs petG|trnW petG-trnW 68058 68182 0 125 LSC 0.002667 1 0 117 175 no 0.166667 2 0.500000 0.002667 1.000000 32.900000 trnW tRNA trnW trnW 68183 68256 1 74 LSC 0.000000 0 0 18 101 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_069 igs trnW|trnP trnW-trnP 68257 68418 0 162 LSC 0.006173 3 0 92 145 no 0.333333 3 0.666667 0.006173 1.000000 37.000000 trnP tRNA trnP trnP 68419 68492 1 74 LSC 0.000000 0 0 12 71 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_070 igs trnP|psaJ trnP-psaJ 68493 68884 0 392 LSC 0.007653 6 8 86 130 no 0.666667 5 0.800000 0.007713 1.000000 47.400000 psaJ gene psaJ psaJ 68885 69019 1 135 LSC 0.002469 1 0 86 134 no 0.166667 2 0.500000 0.002469 1.000000 30.400000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 69020 69478 0 459 LSC 0.004067 4 7 4 56 no 0.500000 4 0.750000 0.004119 0.989107 36.200000 rpl33 gene rpl33 rpl33 69479 69679 1 201 LSC 0.001658 1 0 146 33 no 0.166667 2 0.500000 0.001658 1.000000 25.700000 IGS_072 igs rpl33|rps18 rpl33-rps18 69680 69852 0 173 LSC 0.008863 4 3 144 269 yes 0.666667 5 0.800000 0.008926 1.000000 51.000000 rps18 gene rps18 rps18 69853 70158 1 306 LSC 0.001089 1 0 96 89 no 0.166667 2 0.500000 0.001089 1.000000 29.600000 IGS_073 igs rps18|rpl20 rps18-rpl20 70159 70400 0 242 LSC 0.010882 6 5 36 8 no 1.000000 6 1.000000 0.009719 1.000000 48.500000 rpl20 gene rpl20 rpl20 70401 70787 -1 387 LSC 0.001723 2 0 40 151 no 0.333333 3 0.666667 0.001723 1.000000 31.200000 IGS_074 igs rpl20|rps12 rpl20-rps12 70788 71583 0 796 LSC 0.001926 3 0 300 194 no 0.166667 3 0.333333 0.001926 1.000000 44.000000 rps12_part1 gene rps12 rps12 71584 71697 -1 114 LSC 0.000000 0 0 77 80 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 IGS_075 igs rps12|clpP rps12-clpP 71698 71830 0 133 LSC 0.008521 2 0 191 300 no 0.166667 3 0.333333 0.008521 1.000000 41.900000 clpP gene clpP clpP 71831 73883 -1 2053 LSC 0.002793 15 18 16 300 no 0.500000 4 0.750000 0.002813 0.995616 37.500000 IGS_076 igs clpP|psbB clpP-psbB 73884 74334 0 451 LSC 0.000000 0 0 115 300 no 0.000000 1 0.000000 0.000000 1.000000 30.500000 psbB gene psbB psbB 74335 75861 1 1527 LSC 0.000000 0 0 300 41 no 0.000000 1 0.000000 0.000000 1.000000 28.000000 IGS_077 igs psbB|psbT psbB-psbT 75862 76047 0 186 LSC 0.008961 3 0 300 101 no 0.500000 4 0.750000 0.008961 1.000000 41.700000 psbT gene psbT psbT 76048 76155 1 108 LSC 0.008642 2 0 72 300 no 0.166667 3 0.333333 0.008642 1.000000 33.500000 IGS_078 igs psbT|psbN psbT-psbN 76156 76215 0 60 LSC 0.000000 0 0 1 300 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 psbN gene psbN psbN 76216 76347 -1 132 LSC 0.000000 0 0 61 300 no 0.000000 1 0.000000 0.000000 1.000000 23.300000 IGS_079 igs psbN|psbH psbN-psbH 76348 76452 0 105 LSC 0.000000 0 0 193 297 no 0.000000 1 0.000000 0.000000 1.000000 33.200000 psbH gene psbH psbH 76453 76674 1 222 LSC 0.000000 0 0 298 75 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_080 igs psbH|petB psbH-petB 76675 76799 0 125 LSC 0.004267 1 0 300 19 no 0.000000 2 0.000000 0.004267 1.000000 23.100000 petB gene petB petB 76800 78148 1 1349 LSC 0.003212 10 3 49 103 no 0.666667 5 0.800000 0.003214 1.000000 43.800000 IGS_081 igs petB|petD petB-petD 78149 78330 0 182 LSC 0.005128 2 0 141 300 no 0.166667 3 0.333333 0.005128 1.000000 36.100000 petD gene petD petD 78331 79547 1 1217 LSC 0.000548 2 22 77 208 no 0.333333 3 0.666667 0.000550 1.000000 39.600000 IGS_082 igs petD|rpoA petD-rpoA 79548 79729 0 182 LSC 0.000000 0 3 20 26 no 0.000000 2 0.000000 0.000000 1.000000 22.100000 rpoA gene rpoA rpoA 79730 80743 -1 1014 LSC 0.002893 8 0 202 263 yes 0.500000 4 0.750000 0.002893 1.000000 51.700000 IGS_083 igs rpoA|rps11 rpoA-rps11 80744 80814 0 71 LSC 0.000000 0 0 38 192 no 0.000000 1 0.000000 0.000000 1.000000 21.600000 rps11 gene rps11 rps11 80815 81231 -1 417 LSC 0.003038 3 0 109 6 no 0.500000 4 0.750000 0.003038 1.000000 33.300000 IGS_084 igs rps11|rpl36 rps11-rpl36 81232 81332 0 101 LSC 0.009241 2 0 51 179 no 0.166667 3 0.333333 0.009241 1.000000 32.300000 rpl36 gene rpl36 rpl36 81333 81446 -1 114 LSC 0.000000 0 0 17 65 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_085 igs rpl36|infA rpl36-infA 81447 81541 0 95 LSC 0.003509 1 0 131 285 no 0.166667 2 0.500000 0.003509 1.000000 34.600000 infA gene infA infA 81542 81775 -1 234 LSC 0.000000 0 0 29 51 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_086 igs infA|rps8 infA-rps8 81776 81896 0 121 LSC 0.002755 1 0 263 70 no 0.166667 2 0.500000 0.002755 1.000000 29.400000 rps8 gene rps8 rps8 81897 82301 -1 405 LSC 0.004774 5 0 69 52 no 0.500000 4 0.750000 0.004774 1.000000 37.900000 IGS_087 igs rps8|rpl14 rps8-rpl14 82302 82488 0 187 LSC 0.009447 4 3 121 41 no 0.500000 4 0.750000 0.007928 0.994652 39.900000 rpl14 gene rpl14 rpl14 82489 82857 -1 369 LSC 0.003071 2 0 2 10 no 0.166667 3 0.333333 0.003071 1.000000 25.500000 IGS_088 igs rpl14|rpl16 rpl14-rpl16 82858 82971 0 114 LSC 0.002924 1 1 300 300 no 0.333333 3 0.666667 0.002929 1.000000 43.500000 rpl16 gene rpl16 rpl16 82972 84239 -1 1268 LSC 0.003628 10 9 103 300 no 0.500000 4 0.750000 0.003648 0.995268 45.500000 IGS_089 igs rpl16|rps3 rpl16-rps3 84240 84385 0 146 LSC 0.000000 0 1 175 300 no 0.166667 2 0.500000 0.000000 1.000000 35.800000 rps3 gene rps3 rps3 84386 85042 -1 657 LSC 0.002740 4 0 300 137 no 0.500000 4 0.750000 0.002740 1.000000 46.600000 rpl22 gene rpl22 rpl22 85027 85494 -1 468 LSC 0.002564 2 0 28 28 no 0.000000 2 0.000000 0.002564 1.000000 26.000000 IGS_091 igs rpl22|rps19 rpl22-rps19 85495 85560 0 66 LSC 0.014141 2 6 162 300 yes 0.333333 4 0.500000 0.011647 1.000000 53.000000 rps19 gene rps19 rps19 85561 85839 -1 279 LSC 0.000000 0 0 16 28 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_092 igs rps19|rpl2 rps19-rpl2 85840 85900 0 61 IRb 0.005464 1 0 295 300 no 0.166667 2 0.500000 0.005464 1.000000 41.400000 rpl2 gene rpl2 rpl2 85901 87400 -1 1500 IRb 0.000400 1 0 32 300 no 0.000000 2 0.000000 0.000400 1.000000 27.700000 IGS_093 igs rpl2|rpl23 rpl2-rpl23 87401 87418 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 87419 87700 -1 282 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_094 igs rpl23|trnI rpl23-trnI 87701 87865 0 165 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_095 igs trnI|ycf2 trnI-ycf2 87940 88363 0 424 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 36.300000 ycf2 gene ycf2 ycf2 88364 94861 1 6498 IRb 0.000390 6 0 300 300 no 0.500000 4 0.750000 0.000390 1.000000 43.400000 IGS_096 igs ycf2|ycf15 ycf2-ycf15 94862 95056 0 195 IRb 0.000000 0 0 300 173 no 0.000000 1 0.000000 0.000000 1.000000 31.700000 ycf15 gene ycf15 ycf15 95057 95200 1 144 IRb 0.000000 0 0 300 29 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_097 igs ycf15|trnL ycf15-trnL 95201 95555 0 355 IRb 0.000939 1 0 300 111 no 0.166667 2 0.500000 0.000939 1.000000 32.100000 IGS_098 igs trnL|ndhB trnL-ndhB 95637 96167 0 531 IRb 0.001004 1 0 300 300 no 0.000000 2 0.000000 0.001004 1.000000 39.200000 ndhB gene ndhB ndhB 96168 98379 -1 2212 IRb 0.000151 1 0 300 300 no 0.166667 2 0.500000 0.000151 1.000000 41.800000 IGS_099 igs ndhB|rps7 ndhB-rps7 98380 98653 0 274 IRb 0.000000 0 0 300 108 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 rps7 gene rps7 rps7 98654 99121 -1 468 IRb 0.000712 1 0 300 300 no 0.166667 2 0.500000 0.000712 1.000000 41.000000 IGS_100 igs rps7|rps12 rps7-rps12 99122 99174 0 53 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 99175 99968 -1 794 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_101 igs rps12|trnV rps12-trnV 99969 101557 0 1589 IRb 0.000755 2 1 300 25 no 0.166667 3 0.333333 0.000755 1.000000 30.400000 IGS_102 igs trnV|rrn16 trnV-rrn16 101630 101856 0 227 IRb 0.000000 0 0 46 300 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 rrn16 rRNA rrn16 rrn16 101857 103347 1 1491 IRb 0.000000 0 0 273 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_103 igs rrn16|trnI rrn16-trnI 103348 103646 0 299 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 103647 103683 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 104631 104665 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_106 igs trnI|trnA trnI-trnA 104666 104729 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 104730 104767 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 105579 105613 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_109 igs trnA|rrn23S trnA-rrn23S 105614 105761 0 148 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 105762 108572 1 2811 IRb 0.000237 2 0 300 300 no 0.333333 3 0.666667 0.000237 1.000000 43.700000 IGS_110 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 108573 108670 0 98 IRb 0.000000 0 0 11 300 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 rrn4.5S rRNA rrn4.5S rrn4.5S 108671 108773 1 103 IRb 0.000000 0 0 109 300 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 IGS_111 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 108774 109028 0 255 IRb 0.000000 0 0 212 178 no 0.000000 1 0.000000 0.000000 1.000000 32.100000 rrn5S rRNA rrn5S rrn5S 109029 109149 1 121 IRb 0.000000 0 0 300 57 no 0.000000 1 0.000000 0.000000 1.000000 23.000000 IGS_112 igs rrn5S|trnR rrn5S-trnR 109150 109403 0 254 IRb 0.002625 2 0 300 300 no 0.166667 2 0.500000 0.002625 1.000000 39.000000 trnR tRNA trnR trnR 109404 109477 1 74 IRb 0.000000 0 0 195 300 no 0.000000 1 0.000000 0.000000 1.000000 33.400000 IGS_113 igs trnR|trnN trnR-trnN 109478 110044 0 567 IRb 0.000000 0 1 269 300 no 0.166667 2 0.500000 0.000000 1.000000 42.600000 trnN tRNA trnN trnN 110045 110116 1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_114 igs trnN|ycf1 trnN-ycf1 110117 110444 0 328 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.300000 ycf1 gene ycf1 ycf1 110445 111608 1 1164 IRb 0.001317 4 0 300 26 no 0.500000 4 0.750000 0.001317 1.000000 37.300000 ndhF gene ndhF ndhF 111511 113727 -1 2217 SSC 0.004962 28 3 16 32 yes 0.666667 5 0.800000 0.004873 1.000000 41.200000 IGS_116 igs ndhF|rpl32 ndhF-rpl32 113728 114203 0 476 SSC 0.009384 12 4 3 38 yes 0.500000 4 0.750000 0.009409 1.000000 40.400000 rpl32 gene rpl32 rpl32 114204 114383 1 180 SSC 0.003704 2 2 79 28 no 0.666667 5 0.800000 0.003729 0.994444 37.600000 IGS_117 igs rpl32|trnL rpl32-trnL 114384 115193 0 810 SSC 0.006420 12 20 58 89 no 0.666667 5 0.800000 0.006225 1.000000 49.500000 IGS_118 igs trnL|ccsA trnL-ccsA 115274 115363 0 90 SSC 0.010370 2 1 218 35 no 0.166667 3 0.333333 0.010437 1.000000 33.200000 ccsA gene ccsA ccsA 115364 116335 1 972 SSC 0.003772 9 0 70 20 no 0.500000 4 0.750000 0.003772 1.000000 38.700000 IGS_119 igs ccsA|ndhD ccsA-ndhD 116336 116590 0 255 SSC 0.008627 5 1 300 13 no 0.500000 4 0.750000 0.008637 1.000000 35.900000 ndhD gene ndhD ndhD 116591 118093 -1 1503 SSC 0.003593 13 0 27 183 no 0.500000 4 0.750000 0.003593 1.000000 39.100000 IGS_120 igs ndhD|psaC ndhD-psaC 118094 118204 0 111 SSC 0.000000 0 1 33 72 no 0.166667 2 0.500000 0.000000 1.000000 25.400000 psaC gene psaC psaC 118205 118450 -1 246 SSC 0.004878 3 0 144 9 no 0.166667 3 0.333333 0.004878 1.000000 26.300000 IGS_121 igs psaC|ndhE psaC-ndhE 118451 118705 0 255 SSC 0.008366 4 0 68 300 no 0.166667 3 0.333333 0.008366 1.000000 32.700000 ndhE gene ndhE ndhE 118706 119011 -1 306 SSC 0.000000 0 0 33 65 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 IGS_122 igs ndhE|ndhG ndhE-ndhG 119012 119209 0 198 SSC 0.006397 3 0 300 1 no 0.500000 4 0.750000 0.006397 1.000000 33.000000 ndhG gene ndhG ndhG 119210 119743 -1 534 SSC 0.002372 3 0 29 300 no 0.500000 4 0.750000 0.002372 1.000000 36.900000 IGS_123 igs ndhG|ndhI ndhG-ndhI 119744 120095 0 352 SSC 0.000000 0 0 300 1 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 ndhI gene ndhI ndhI 120096 120578 -1 483 SSC 0.002484 2 0 300 24 no 0.000000 2 0.000000 0.002484 1.000000 26.000000 IGS_124 igs ndhI|ndhA ndhI-ndhA 120579 120660 0 82 SSC 0.007317 1 0 12 300 no 0.000000 2 0.000000 0.007317 1.000000 24.500000 ndhA gene ndhA ndhA 120661 122849 -1 2189 SSC 0.002162 12 8 57 112 no 0.500000 4 0.750000 0.002170 0.997259 39.200000 IGS_125 igs ndhA|ndhH ndhA-ndhH 122850 122850 0 1 SSC 0.000000 0 0 71 111 no 0.000000 1 0.000000 NA 1.000000 24.100000 ndhH gene ndhH ndhH 122851 124032 -1 1182 SSC 0.004061 12 0 72 41 no 0.500000 4 0.750000 0.004061 1.000000 40.500000 IGS_126 igs ndhH|rps15 ndhH-rps15 124033 124129 0 97 SSC 0.012371 3 0 84 300 no 0.166667 3 0.333333 0.012371 1.000000 37.600000 rps15 gene rps15 rps15 124130 124402 -1 273 SSC 0.000000 0 0 26 95 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_127 igs rps15|ycf1 rps15-ycf1 124403 124788 0 386 SSC 0.003800 3 0 299 185 no 0.500000 4 0.750000 0.003800 1.000000 46.500000 ycf1 gene ycf1 ycf1 124789 130413 -1 5625 SSC 0.006436 90 0 10 300 yes 0.666667 5 0.800000 0.006436 1.000000 36.900000 IGS_128 igs ycf1|trnN ycf1-trnN 130414 130741 0 328 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.300000 trnN tRNA trnN trnN 130742 130813 -1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_129 igs trnN|trnR trnN-trnR 130814 131380 0 567 IRa 0.000000 0 1 300 269 no 0.166667 2 0.500000 0.000000 1.000000 42.600000 trnR tRNA trnR trnR 131381 131454 -1 74 IRa 0.000000 0 0 300 195 no 0.000000 1 0.000000 0.000000 1.000000 33.400000 IGS_130 igs trnR|rrn5S trnR-rrn5S 131455 131708 0 254 IRa 0.002625 2 0 300 300 no 0.166667 2 0.500000 0.002625 1.000000 39.000000 rrn5S rRNA rrn5S rrn5S 131709 131829 -1 121 IRa 0.000000 0 0 57 300 no 0.000000 1 0.000000 0.000000 1.000000 23.000000 IGS_131 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 131830 132084 0 255 IRa 0.000000 0 0 178 212 no 0.000000 1 0.000000 0.000000 1.000000 32.100000 rrn4.5S rRNA rrn4.5S rrn4.5S 132085 132187 -1 103 IRa 0.000000 0 0 300 109 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 IGS_132 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 132188 132285 0 98 IRa 0.000000 0 0 300 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 rrn23S rRNA rrn23S rrn23S 132286 135096 -1 2811 IRa 0.000237 2 0 300 300 no 0.333333 3 0.666667 0.000237 1.000000 43.700000 IGS_133 igs rrn23S|trnA rrn23S-trnA 135097 135244 0 148 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 135245 135279 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 136091 136128 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_136 igs trnA|trnI trnA-trnI 136129 136192 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 136193 136227 1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 137175 137211 1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_139 igs trnI|rrn16 trnI-rrn16 137212 137510 0 299 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16 rRNA rrn16 rrn16 137511 139001 -1 1491 IRa 0.000000 0 0 300 273 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_140 igs rrn16|trnV rrn16-trnV 139002 139228 0 227 IRa 0.000000 0 0 300 46 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 IGS_141 igs trnV|rps12 trnV-rps12 139301 140889 0 1589 IRa 0.000755 2 1 25 300 no 0.166667 3 0.333333 0.000755 1.000000 30.400000 rps12_part2 gene rps12 rps12 140890 141683 1 794 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_142 igs rps12|rps7 rps12-rps7 141684 141736 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 141737 142204 1 468 IRa 0.000712 1 0 300 300 no 0.166667 2 0.500000 0.000712 1.000000 41.000000 IGS_143 igs rps7|ndhB rps7-ndhB 142205 142478 0 274 IRa 0.000000 0 0 108 300 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 ndhB gene ndhB ndhB 142479 144690 1 2212 IRa 0.000151 1 0 300 300 no 0.166667 2 0.500000 0.000151 1.000000 41.800000 IGS_144 igs ndhB|trnL ndhB-trnL 144691 145221 0 531 IRa 0.001004 1 0 300 300 no 0.000000 2 0.000000 0.001004 1.000000 39.200000 IGS_145 igs trnL|ycf15 trnL-ycf15 145303 145657 0 355 IRa 0.000939 1 0 111 300 no 0.166667 2 0.500000 0.000939 1.000000 32.100000 ycf15 gene ycf15 ycf15 145658 145801 -1 144 IRa 0.000000 0 0 29 300 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_146 igs ycf15|ycf2 ycf15-ycf2 145802 145996 0 195 IRa 0.000000 0 0 173 300 no 0.000000 1 0.000000 0.000000 1.000000 31.700000 ycf2 gene ycf2 ycf2 145997 152494 -1 6498 IRa 0.000390 6 0 300 300 no 0.500000 4 0.750000 0.000390 1.000000 43.400000 IGS_147 igs ycf2|trnI ycf2-trnI 152495 152918 0 424 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 36.300000 IGS_148 igs trnI|rpl23 trnI-rpl23 152993 153157 0 165 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 153158 153439 1 282 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_149 igs rpl23|rpl2 rpl23-rpl2 153440 153457 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 153458 154957 1 1500 IRa 0.000400 1 0 300 32 no 0.000000 2 0.000000 0.000400 1.000000 27.700000 IGS_150 igs rpl2|trnH rpl2-trnH 154958 17 0 79 IRa 0.004219 1 0 300 159 no 0.166667 2 0.500000 0.004219 1.000000 37.300000