primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnQ-UUG_p1 trnQ-UUG 1 CCACCTTTTGAAGAGCCCTT TGTTGACAAAGACCCATCGG 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.110200 5800 5868 1045-1164 1.000000 87.5 trnQ-UUG_p2 trnQ-UUG 2 CCACCTTTTGAAGAGCCCTT GAATCCTTTCGTCCCAGGTC 20 20 50.0 55.0 58.0 58.0 0.0 0.0 0.026664 5800 5868 795-827 0.600000 65.6 trnQ-UUG_p3 trnQ-UUG 3 CCACCTTTTGAAGAGCCCTT CTGTTCTGTATTGGTGCCGA 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.094382 5800 5868 736-768 0.600000 65.1 trnQ-UUG_p4 trnQ-UUG 4 CCACCTTTTGAAGAGCCCTT TGTTCTGTATTGGTGCCGAG 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.094382 5800 5868 735-767 0.600000 65.1 trnQ-UUG_p5 trnQ-UUG 5 TGAACAGTTCCTGTGGGTTG GAATCCTTTCGTCCCAGGTC 20 20 50.0 55.0 57.9 58.0 10.9 0.0 0.076923 5800 5868 889-921 0.600000 65.0 rpoB-trnC-GCA_p1 rpoB-trnC-GCA 1 GCCCAGGTATTACAGCCATT AAAGGGGATTTCGCGTCTTT 20 20 50.0 45.0 57.6 58.1 0.0 5.8 0.459335 26329 27461 1274-1340 1.000000 83.3 rpoB-trnC-GCA_p2 rpoB-trnC-GCA 2 GCCCAGGTATTACAGCCATT AAGGGGATTTCGCGTCTTTT 20 20 50.0 45.0 57.6 58.1 0.0 5.8 0.459335 26329 27461 1273-1339 1.000000 83.3 rpoB-trnC-GCA_p3 rpoB-trnC-GCA 3 GCCCTGATCAACGAACCTAC AAAAGGGGATTTCGCGTCTT 20 20 55.0 45.0 58.3 58.1 0.0 5.8 0.441211 26329 27461 1322-1388 1.000000 83.2 rpoB-trnC-GCA_p4 rpoB-trnC-GCA 4 GCCCTGATCAACGAACCTAC AAAGGGGATTTCGCGTCTTT 20 20 55.0 45.0 58.3 58.1 0.0 5.8 0.441211 26329 27461 1321-1387 1.000000 83.2 rpoB-trnC-GCA_p5 rpoB-trnC-GCA 5 GCCCTGATCAACGAACCTAC AAGGGGATTTCGCGTCTTTT 20 20 55.0 45.0 58.3 58.1 0.0 5.8 0.441211 26329 27461 1320-1386 1.000000 83.2 trnD-GUC-trnY-GUA_p1 trnD-GUC-trnY-GUA 1 CGGTGCTCTGACCAATTGAA CTGGTTCAAATCCAGCTCGA 20 20 50.0 50.0 58.5 57.9 7.1 0.0 0.576473 29638 29980 397-412 1.000000 82.8 trnD-GUC-trnY-GUA_p2 trnD-GUC-trnY-GUA 2 CGGTGCTCTGACCAATTGAA TGGTTCAAATCCAGCTCGAC 20 20 50.0 50.0 58.5 58.2 7.1 0.0 0.668921 29638 29980 396-411 1.000000 82.0 trnD-GUC-trnY-GUA_p3 trnD-GUC-trnY-GUA 3 CGGTGCTCTGACCAATTGAA TGGCAATATGTCTACGCTGG 20 20 50.0 50.0 58.5 57.8 7.1 0.0 0.716274 29638 29980 413-428 1.000000 81.4 trnD-GUC-trnY-GUA_p4 trnD-GUC-trnY-GUA 4 CGGTGCTCTGACCAATTGAA GGCAATATGTCTACGCTGGT 20 20 50.0 50.0 58.5 57.8 7.1 0.0 0.717825 29638 29980 412-427 1.000000 81.4 trnD-GUC-trnY-GUA_p5 trnD-GUC-trnY-GUA 5 CGGTGCTCTGACCAATTGAA GGGGACGGACTGTAAATTCG 20 20 50.0 55.0 58.5 58.4 7.1 0.0 0.828828 29638 29980 434-449 1.000000 80.1 trnE-UUC-trnG-UCC_p1 trnE-UUC-trnG-UCC 1 TGGAGATTCCAATCGCTGTG GCCTTCCCAAAATGAAAGGC 20 20 50.0 50.0 58.0 57.9 0.0 15.7 0.127561 30197 31234 1840-2031 0.600000 75.0 trnE-UUC-trnG-UCC_p2 trnE-UUC-trnG-UCC 2 GGAGATTCCAATCGCTGTGT GCCTTCCCAAAATGAAAGGC 20 20 50.0 50.0 58.0 57.9 3.5 15.7 0.128979 30197 31234 1839-2030 0.600000 75.0 trnE-UUC-trnG-UCC_p3 trnE-UUC-trnG-UCC 3 TGGAGATTCCAATCGCTGTG GCCTTTCATTTTGGGAAGGC 20 20 50.0 50.0 58.0 57.9 0.0 9.3 0.127561 30197 31234 1645-1645 0.200000 47.0 trnE-UUC-trnG-UCC_p4 trnE-UUC-trnG-UCC 4 GGAGATTCCAATCGCTGTGT GCCTTTCATTTTGGGAAGGC 20 20 50.0 50.0 58.0 57.9 3.5 9.3 0.128979 30197 31234 1644-1644 0.200000 47.0 trnE-UUC-trnG-UCC_p5 trnE-UUC-trnG-UCC 5 TGGAGATTCCAATCGCTGTG TTGCCCCCAAAATGAAAGGA 20 20 50.0 45.0 58.0 57.9 0.0 0.0 0.137649 30197 31234 1688-1688 0.200000 46.9 rps18-trnG-UCC_p1 rps18-trnG-UCC 1 GCCTTCCCAAAATGAAAGGC TTCAATAAAAGTCCCCCGCC 20 20 50.0 50.0 57.9 58.2 15.7 0.0 0.257090 31599 31725 1101-1101 0.200000 45.9 rps18-trnG-UCC_p2 rps18-trnG-UCC 2 TCCTTTCATTTTGGGGGCAA TTCAATAAAAGTCCCCCGCC 20 20 45.0 50.0 57.9 58.2 0.0 0.0 0.267177 31599 31725 1058-1058 0.200000 45.9 rps18-trnG-UCC_p3 rps18-trnG-UCC 3 TCAATCGAGTCACCCGTCTA TTCAATAAAAGTCCCCCGCC 20 20 50.0 50.0 57.9 58.2 0.0 0.0 0.276261 31599 31725 908-908 0.200000 45.8 rps18-trnG-UCC_p4 rps18-trnG-UCC 4 ACTATATCCGCAAAAGGCCG TTCAATAAAAGTCCCCCGCC 20 20 50.0 50.0 58.1 58.2 0.0 0.0 0.278995 31599 31725 1136-1136 0.200000 45.8 rps18-trnG-UCC_p5 rps18-trnG-UCC 5 GCCTTCCCAAAATGAAAGGC AACGAAAAATGGGAGGGAGG 20 20 50.0 50.0 57.9 57.8 15.7 0.0 0.315083 31599 31725 1065-1065 0.200000 45.5 trnT-UGU-trnL-UAA_p1 trnT-UGU-trnL-UAA 1 GCGATGCTCTAACCTCTGAG GTTGCGTCTACCAATTTCGC 20 20 55.0 50.0 57.9 58.1 0.0 0.0 0.254367 46686 47673 1012-1121 1.000000 85.6 trnT-UGU-trnL-UAA_p2 trnT-UGU-trnL-UAA 2 GCGATGCTCTAACCTCTGAG CGTTGCGTCTACCAATTTCG 20 20 55.0 50.0 57.9 57.9 0.0 0.0 0.272077 46686 47673 1013-1122 1.000000 85.5 trnT-UGU-trnL-UAA_p3 trnT-UGU-trnL-UAA 3 GCGATGCTCTAACCTCTGAG TCCAATTAAGTCCGTTGCGT 20 20 55.0 45.0 57.9 57.8 0.0 0.0 0.305591 46686 47673 1025-1134 1.000000 85.2 trnT-UGU-trnL-UAA_p4 trnT-UGU-trnL-UAA 4 GCGATGCTCTAACCTCTGAG TCCGTTGCGTCTACCAATTT 20 20 55.0 45.0 57.9 57.8 0.0 0.0 0.305591 46686 47673 1015-1124 1.000000 85.2 trnT-UGU-trnL-UAA_p5 trnT-UGU-trnL-UAA 5 GACCGTCGCATTACAAATGC GTTGCGTCTACCAATTTCGC 20 20 50.0 50.0 58.2 58.1 13.4 0.0 0.311430 46686 47673 1030-1139 1.000000 85.1 psaI-rpl20_p1 psaI-rpl20 1 GTTTTTCGAGACCCCGCTAT TCGGCTCATCGTGATAGAGT 20 20 50.0 50.0 58.0 58.0 0.0 9.5 0.051243 65455 67015 1372-2256 1.000000 91.6 psaI-rpl20_p2 psaI-rpl20 2 GTTTTTCGAGACCCCGCTAT TCGTCGTTTGTGGATCACTC 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.080273 65455 67015 1334-2218 1.000000 91.4 psaI-rpl20_p3 psaI-rpl20 3 GTTTTTCGAGACCCCGCTAT TCGCAAAATGCTTGCACAAA 20 20 50.0 40.0 58.0 58.1 0.0 9.5 0.088042 65455 67015 1226-2110 1.000000 91.3 psaI-rpl20_p4 psaI-rpl20 4 CCAAGATAACTGGAAGCCCC TCGGCTCATCGTGATAGAGT 20 20 55.0 50.0 57.9 58.0 0.0 9.5 0.089889 65455 67015 1450-2334 1.000000 91.3 psaI-rpl20_p5 psaI-rpl20 5 TCGAGACCCCGCTATAAGTT TCGGCTCATCGTGATAGAGT 20 20 50.0 50.0 57.9 58.0 0.0 9.5 0.094266 65455 67015 1367-2251 1.000000 91.2 rps12-clpP_p1 rps12-clpP 1 TCGTAGCATTTCTGACTGGC CCGCGTATGAAGGACTTTGA 20 20 50.0 50.0 58.0 58.0 0.0 4.9 0.014728 68288 69623 803-1613 1.000000 91.9 rps12-clpP_p2 rps12-clpP 2 CCCTCTTAGTCCGTTCTTGC CCGCGTATGAAGGACTTTGA 20 20 55.0 50.0 58.0 58.0 0.0 4.9 0.016123 68288 69623 1154-1985 1.000000 91.9 rps12-clpP_p3 rps12-clpP 3 CGTAGCATTTCTGACTGGCT CCGCGTATGAAGGACTTTGA 20 20 50.0 50.0 58.0 58.0 0.0 4.9 0.020318 68288 69623 802-1612 1.000000 91.8 rps12-clpP_p4 rps12-clpP 4 TCGTAGCATTTCTGACTGGC GAAAGGGTGGTACGTGGATC 20 20 50.0 55.0 58.0 58.0 0.0 0.0 0.030093 68288 69623 1034-1842 1.000000 91.8 rps12-clpP_p5 rps12-clpP 5 CCCTCTTAGTCCGTTCTTGC GAAAGGGTGGTACGTGGATC 20 20 55.0 55.0 58.0 58.0 0.0 0.0 0.031488 68288 69623 1385-2214 1.000000 91.7 psbB-psbT_p1 psbB-psbT 1 TCCAAAAACTTGGCGATCCA GGAATGTATAAACCAATGCTTCCA 20 24 45.0 37.5 58.0 57.5 0.0 0.0 4.475701 73093 73354 287-331 1.000000 53.5 psbB-psbT_p2 psbB-psbT 2 GGCGATCCAACCACAAAAAG GGAATGTATAAACCAATGCTTCCA 20 24 50.0 37.5 57.9 57.5 0.0 0.0 4.528568 73093 73354 276-320 1.000000 53.3 psbB-psbT_p3 psbB-psbT 3 ACCACAAAAAGACAGGCAGT GGAATGTATAAACCAATGCTTCCA 20 24 45.0 37.5 57.9 57.5 0.0 0.0 4.607870 73093 73354 267-311 1.000000 52.9 psbB-psbT_p4 psbB-psbT 4 CCAACCACAAAAAGACAGGC GGAATGTATAAACCAATGCTTCCA 20 24 50.0 37.5 57.8 57.5 0.0 0.0 4.687531 73093 73354 270-314 1.000000 52.2 psbB-psbT_p5 psbB-psbT 5 TCCAAAAACTTGGCGATCCA AGGAATGTATAAACCAATGCTTCC 20 24 45.0 37.5 58.0 57.3 0.0 0.0 4.727054 73093 73354 288-332 1.000000 51.5 rpl14-rpl16_p1 rpl14-rpl16 1 GCCACATTCAAATGGGTCTG ATGTAGAACCAAAAGAAGATTAG 20 23 50.0 30.4 57.3 52.2 7.6 0.0 9.451360 80432 81119 723-743 0.600000 32.2 rpl14-rpl16_p2 rpl14-rpl16 2 TGTTGTCCGCCACATTCAAA ATGTAGAACCAAAAGAAGATTAG 20 23 45.0 30.4 58.6 52.2 0.0 0.0 9.397568 80432 81119 731-751 0.600000 32.1 rpl14-rpl16_p3 rpl14-rpl16 3 TTGTCCGCCACATTCAAATG ATGTAGAACCAAAAGAAGATTAG 20 23 45.0 30.4 57.3 52.2 1.2 0.0 9.512445 80432 81119 729-749 0.600000 32.1 rpl14-rpl16_p4 rpl14-rpl16 4 GTTGTCCGCCACATTCAAAT ATGTAGAACCAAAAGAAGATTAG 20 23 45.0 30.4 57.3 52.2 0.0 0.0 9.514295 80432 81119 730-750 0.600000 32.1 rpl14-rpl16_p5 rpl14-rpl16 5 CGCCACATTCAAATGGGTCT ATGTAGAACCAAAAGAAGATTAG 20 23 50.0 30.4 58.8 52.2 7.6 0.0 9.614644 80432 81119 724-744 0.600000 32.1 trnL-CAA-ndhB_p1 trnL-CAA-ndhB 1 GTCTCGCGTGTCTACCATTT ATTCTTGCAATTGCCCAGGA 20 20 50.0 45.0 58.0 58.1 5.8 26.9 0.066453 87460 88056 661-670 1.000000 85.6 trnL-CAA-ndhB_p2 trnL-CAA-ndhB 2 GTCTCGCGTGTCTACCATTT TTCTTGCAATTGCCCAGGAT 20 20 50.0 45.0 58.0 58.1 5.8 26.9 0.066453 87460 88056 660-669 1.000000 85.6 trnL-CAA-ndhB_p3 trnL-CAA-ndhB 3 CTCGCGTGTCTACCATTTCA ATTCTTGCAATTGCCCAGGA 20 20 50.0 45.0 58.0 58.1 5.8 26.9 0.067824 87460 88056 659-668 1.000000 85.6 trnL-CAA-ndhB_p4 trnL-CAA-ndhB 4 CTCGCGTGTCTACCATTTCA TTCTTGCAATTGCCCAGGAT 20 20 50.0 45.0 58.0 58.1 5.8 26.9 0.067824 87460 88056 658-667 1.000000 85.6 trnL-CAA-ndhB_p5 trnL-CAA-ndhB 5 GTCTCGCGTGTCTACCATTT CGATTCTTGCAATTGCCCAG 20 20 50.0 50.0 58.0 58.1 5.8 26.9 0.090558 87460 88056 663-672 1.000000 85.4 ErcaC_r001-trnI-GAU_p1 ErcaC_r001-trnI-GAU 1 CAAGGTAGCCGTACTGGAAG GGCACAACGACGCAATTATC 20 20 55.0 50.0 57.7 58.2 7.8 0.0 0.485056 95312 95616 388-395 1.000000 82.0 ErcaC_r001-trnI-GAU_p2 ErcaC_r001-trnI-GAU 2 CAAGGTAGCCGTACTGGAAG CTATCCATGTGGCTGAGAGC 20 20 55.0 55.0 57.7 57.8 7.8 0.0 0.462074 95312 95616 420-427 1.000000 81.8 ErcaC_r001-trnI-GAU_p3 ErcaC_r001-trnI-GAU 3 CAAGGTAGCCGTACTGGAAG CGCTGATGAGCACATTGAAC 20 20 55.0 50.0 57.7 57.8 7.8 4.7 0.464916 95312 95616 439-446 1.000000 81.5 ErcaC_r001-trnI-GAU_p4 ErcaC_r001-trnI-GAU 4 AGTGACTGGAGTGAAGTCGT CTATCCATGTGGCTGAGAGC 20 20 50.0 55.0 58.3 57.8 0.0 0.0 0.473195 95312 95616 442-449 1.000000 81.4 ErcaC_r001-trnI-GAU_p5 ErcaC_r001-trnI-GAU 5 AGTGACTGGAGTGAAGTCGT CGCTGATGAGCACATTGAAC 20 20 50.0 50.0 58.3 57.8 0.0 4.7 0.476037 95312 95616 461-468 1.000000 81.2 trnA-UGC-ErcaC_r002_p1 trnA-UGC-ErcaC_r002 1 GGCTGTCAAGAACGTAGAGG AGTGATGCTTTCGGCTACTG 20 20 55.0 50.0 58.0 58.0 0.0 0.0 0.018067 97555 98414 1352-1912 0.800000 83.9 trnA-UGC-ErcaC_r002_p2 trnA-UGC-ErcaC_r002 2 GGGCTGTCAAGAACGTAGAG AGTGATGCTTTCGGCTACTG 20 20 55.0 50.0 58.0 58.0 0.0 0.0 0.018067 97555 98414 1353-1913 0.800000 83.9 trnA-UGC-ErcaC_r002_p3 trnA-UGC-ErcaC_r002 3 GGCTGTCAAGAACGTAGAGG ATTCGGGAATCTCCGGATCT 20 20 55.0 50.0 58.0 58.0 0.0 3.6 0.019236 97555 98414 1105-1666 0.800000 83.8 trnA-UGC-ErcaC_r002_p4 trnA-UGC-ErcaC_r002 4 GGGCTGTCAAGAACGTAGAG ATTCGGGAATCTCCGGATCT 20 20 55.0 50.0 58.0 58.0 0.0 3.6 0.019236 97555 98414 1106-1667 0.800000 83.8 trnA-UGC-ErcaC_r002_p5 trnA-UGC-ErcaC_r002 5 GGCTGTCAAGAACGTAGAGG ATGTTTCAGTTCGCCAGGTT 20 20 55.0 45.0 58.0 58.0 0.0 0.0 0.021074 97555 98414 1172-1733 0.800000 83.8 ErcaC_r004-trnR-ACG_p1 ErcaC_r004-trnR-ACG 1 AAAAATAGCTCGACGCCAGG CCACGTGCTCTAATCCTCTG 20 20 50.0 55.0 58.6 57.8 0.0 10.9 0.846282 101766 102005 283-294 1.000000 82.5 ErcaC_r004-trnR-ACG_p2 ErcaC_r004-trnR-ACG 2 GGAAAAATAGCTCGACGCCA CCACGTGCTCTAATCCTCTG 20 20 50.0 55.0 58.6 57.8 0.0 10.9 0.850208 101766 102005 285-296 1.000000 82.4 ErcaC_r004-trnR-ACG_p3 ErcaC_r004-trnR-ACG 3 GAAAAATAGCTCGACGCCAG CCACGTGCTCTAATCCTCTG 20 20 50.0 55.0 57.3 57.8 0.0 10.9 0.937036 101766 102005 284-295 1.000000 81.7 ErcaC_r004-trnR-ACG_p4 ErcaC_r004-trnR-ACG 4 CTGCGGAAAAATAGCTCGAC CCACGTGCTCTAATCCTCTG 20 20 50.0 55.0 57.3 57.8 0.0 10.9 0.937036 101766 102005 289-300 1.000000 81.6 ErcaC_r004-trnR-ACG_p5 ErcaC_r004-trnR-ACG 5 TGCGGAAAAATAGCTCGACG CCACGTGCTCTAATCCTCTG 20 20 50.0 55.0 59.0 57.8 0.0 10.9 1.219445 101766 102005 288-299 1.000000 79.4 rpl32-rps15_p1 rpl32-rps15 1 GGCGCTCAAAGCTTTTTCAT CTTCTTGCGAGGTCACTGAA 20 20 45.0 50.0 57.9 57.8 9.5 0.0 0.225115 105999 107419 364-1558 1.000000 90.2 rpl32-rps15_p2 rpl32-rps15 2 GGCGCTCAAAGCTTTTTCAT TTCTTCTTGCGAGGTCACTG 20 20 45.0 50.0 57.9 57.8 9.5 0.0 0.225115 105999 107419 366-1560 1.000000 90.2 rpl32-rps15_p3 rpl32-rps15 3 GGCGCTCAAAGCTTTTTCAT GTAAGGATGAGCCGGAGAAC 20 20 45.0 55.0 57.9 57.8 9.5 5.0 0.296864 105999 107419 785-1979 1.000000 89.6 rpl32-rps15_p4 rpl32-rps15 4 GGCGCTCAAAGCTTTTTCAT AGTAAGGATGAGCCGGAGAA 20 20 45.0 50.0 57.9 57.8 9.5 5.0 0.230982 105999 107419 1980-1980 0.200000 46.2 rpl32-rps15_p5 rpl32-rps15 5 GGCGCTCAAAGCTTTTTCAT AGAGTAAGGATGAGCCGGAG 20 20 45.0 55.0 57.9 58.3 9.5 5.0 0.371756 105999 107419 1982-1982 0.200000 45.0