primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score psbZ-trnG-UCC_p1 psbZ-trnG-UCC 1 CTTTCGCTTTCCCAGAAGGT CGTCTTCTCCTTGGCAAAGA 20 20 50.0 50.0 58.1 57.8 0.0 1.1 0.272272 8556 8703 288-372 1.000000 85.2 psbZ-trnG-UCC_p2 psbZ-trnG-UCC 2 CTTTCGCTTTCCCAGAAGGT TGAGGTCACGGGTTCAAATC 20 20 50.0 50.0 58.1 57.8 0.0 0.0 0.281352 8556 8703 360-444 1.000000 84.9 psbZ-trnG-UCC_p3 psbZ-trnG-UCC 3 CTTTCGCTTTCCCAGAAGGT ATGGTTATTTTGTGGGCGGA 20 20 50.0 45.0 58.1 57.8 0.0 0.0 0.326243 8556 8703 326-410 0.971429 83.5 psbZ-trnG-UCC_p4 psbZ-trnG-UCC 4 CTTTCGCTTTCCCAGAAGGT TGGTTATTTTGTGGGCGGAT 20 20 50.0 45.0 58.1 57.8 0.0 0.0 0.326243 8556 8703 325-409 0.971429 83.5 psbZ-trnG-UCC_p5 psbZ-trnG-UCC 5 ACCTATCGCTTTCGCTTTCC CGTCTTCTCCTTGGCAAAGA 20 20 50.0 50.0 58.3 57.8 0.0 1.1 0.516681 8556 8703 296-380 1.000000 83.1 ycf3_p1 ycf3 1 CCTGGGGTGGACATAATTGG CATTCCAAAAGGAACTGAAGCA 20 22 55.0 40.9 57.9 57.4 0.0 0.0 2.660994 14189 15978 1929-1964 1.000000 64.6 ycf3_p2 ycf3 2 CCTGGGGTGGACATAATTGG TCCAAAAGGAACTGAAGCAA 20 20 55.0 40.0 57.9 55.4 0.0 0.0 2.695196 14189 15978 1926-1961 1.000000 64.4 ycf3_p3 ycf3 3 CCTGGGGTGGACATAATTGG TTCCAAAAGGAACTGAAGCA 20 20 55.0 40.0 57.9 55.4 0.0 0.0 2.695196 14189 15978 1927-1962 1.000000 64.3 ycf3_p4 ycf3 4 CCTGGGGTGGACATAATTGG TCCAAAAGGAACTGAAGCAAA 20 21 55.0 38.1 57.9 56.2 0.0 0.0 2.888446 14189 15978 1926-1961 1.000000 62.8 ycf3_p5 ycf3 5 CCTGGGGTGGACATAATTGG TTCCAAAAGGAACTGAAGCAA 20 21 55.0 38.1 57.9 56.2 0.0 0.0 2.888446 14189 15978 1927-1962 1.000000 62.8 rps4-psbM_p1 rps4-psbM 1 CTGTTGACCCCTGAGCATTT AAGTGGTAAGGCAGAGGACT 20 20 50.0 50.0 58.1 58.0 0.0 0.0 0.116354 16877 17204 1044-1075 1.000000 86.1 rps4-psbM_p2 rps4-psbM 2 TGCCGTAATTGTCGTTCTGT AAGTGGTAAGGCAGAGGACT 20 20 45.0 50.0 57.8 58.0 0.0 0.0 0.189329 16877 17204 1006-1037 1.000000 85.8 rps4-psbM_p3 rps4-psbM 3 CTGTTGACCCCTGAGCATTT CAAGTGGTAAGGCAGAGGAC 20 20 50.0 55.0 58.1 57.9 0.0 0.0 0.185464 16877 17204 1045-1076 1.000000 85.5 rps4-psbM_p4 rps4-psbM 4 CAAATCCCTCTCTTTCCGCA AAGTGGTAAGGCAGAGGACT 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.145355 16877 17204 1492-1528 1.000000 84.3 rps4-psbM_p5 rps4-psbM 5 CTGTTGACCCCTGAGCATTT CTGGGTGTCGCCTACTTTTT 20 20 50.0 50.0 58.1 58.1 0.0 1.7 0.192650 16877 17204 997-1028 0.971429 83.9 rpoC2-rps2_p1 rpoC2-rps2 1 GCCGGTACTGGAAAATGGAA TGATGTCCGAGATGAACTGC 20 20 50.0 50.0 58.2 57.7 25.6 0.0 0.471014 27576 27707 197-280 0.971429 86.7 rpoC2-rps2_p2 rpoC2-rps2 2 GCCGGTACTGGAAAATGGAA GATGTCCGAGATGAACTGCT 20 20 50.0 50.0 58.2 57.4 25.6 0.0 0.764367 27576 27707 196-279 0.971429 84.4 rpoC2-rps2_p3 rpoC2-rps2 3 AGTAGTAAAATACCCGCCGG TGATGTCCGAGATGAACTGC 20 20 50.0 50.0 57.1 57.7 0.0 0.0 1.196738 27576 27707 194-295 1.000000 82.3 rpoC2-rps2_p4 rpoC2-rps2 4 GCCGGTACTGGAAAATGGAA TGTCCGAGATGAACTGCTAC 20 20 50.0 50.0 58.2 57.1 25.6 0.0 1.112474 27576 27707 194-277 0.971429 81.7 rpoC2-rps2_p5 rpoC2-rps2 5 GCCGGTACTGGAAAATGGAA GTCCGAGATGAACTGCTACT 20 20 50.0 50.0 58.2 56.8 25.6 0.0 1.408531 27576 27707 193-276 0.971429 79.3 rps2_p1 rps2 1 AGAAAAGTCATAGATTCCGTAG GCTTTGCGCTTACTTCGAAA 22 20 36.4 45.0 53.1 57.7 0.0 9.7 7.165990 27708 28427 808-808 1.000000 41.3 rps2_p2 rps2 2 CGTAGGAATGGAAATTCTTTTAGAGA GCTTTGCGCTTACTTCGAAA 26 20 34.6 45.0 57.3 57.7 0.0 9.7 7.028000 27708 28427 791-791 1.000000 41.2 rps2_p3 rps2 3 CGTAGGAATGGAAATTCTTTT GCTTTGCGCTTACTTCGAAA 21 20 33.3 45.0 52.1 57.7 0.0 9.7 7.194237 27708 28427 791-791 1.000000 41.2 rps2_p4 rps2 4 TCTTTTAGAGAAGAGAAAAGCA GCTTTGCGCTTACTTCGAAA 22 20 31.8 45.0 53.1 57.7 0.0 9.7 7.245803 27708 28427 776-776 1.000000 41.2 rps2_p5 rps2 5 CGTAGGAATGGAAATTCTTTTAGAG GCTTTGCGCTTACTTCGAAA 25 20 36.0 45.0 56.0 57.7 0.0 9.7 7.273948 27708 28427 791-791 1.000000 41.2 trnR-UCU-trnS-GCU_p1 trnR-UCU-trnS-GCU 1 AGAAGACCTCTGTCCTATCCA CTTTGGTCCTCTCAGCCATC 21 20 47.6 55.0 56.9 58.0 0.0 0.0 2.087135 32665 33429 793-856 1.000000 71.2 trnR-UCU-trnS-GCU_p2 trnR-UCU-trnS-GCU 2 AGGTTTAGAAGACCTCTGTCCT CTTTGGTCCTCTCAGCCATC 22 20 45.5 55.0 57.9 58.0 0.0 0.0 2.170463 32665 33429 799-862 1.000000 70.5 trnR-UCU-trnS-GCU_p3 trnR-UCU-trnS-GCU 3 AGAAGACCTCTGTCCTATCCA CGGAGAGAGAGGGATTCGAA 21 20 47.6 55.0 56.9 58.3 0.0 0.0 2.370066 32665 33429 857-920 1.000000 68.8 trnR-UCU-trnS-GCU_p4 trnR-UCU-trnS-GCU 4 AGAAGACCTCTGTCCTATCCA GAACCCTCGATACGGGATTG 21 20 47.6 55.0 56.9 57.8 0.0 14.8 2.202002 32665 33429 840-903 0.942857 67.7 trnR-UCU-trnS-GCU_p5 trnR-UCU-trnS-GCU 5 AGGTTTAGAAGACCTCTGTCCT GAACCCTCGATACGGGATTG 22 20 45.5 55.0 57.9 57.8 0.0 14.8 2.285330 32665 33429 846-909 0.942857 67.0 trnF-GAA-trnfM-CAU_p1 trnF-GAA-trnfM-CAU 1 CCGGGATAGCTCAGTTGGTA ACTCTCGCCTTATGAAAGCG 20 20 55.0 50.0 58.6 58.1 0.0 0.0 0.662101 35590 35941 471-671 1.000000 78.4 trnF-GAA-trnfM-CAU_p2 trnF-GAA-trnfM-CAU 2 TCAGTTGGTAGAGCAGAGGA ACTCTCGCCTTATGAAAGCG 20 20 50.0 50.0 57.4 58.1 0.0 0.0 0.677017 35590 35941 461-661 1.000000 78.3 trnF-GAA-trnfM-CAU_p3 trnF-GAA-trnfM-CAU 3 TGGTAGAGCAGAGGACTGAA ACTCTCGCCTTATGAAAGCG 20 20 50.0 50.0 57.4 58.1 0.0 0.0 0.677017 35590 35941 456-656 1.000000 78.3 trnF-GAA-trnfM-CAU_p4 trnF-GAA-trnfM-CAU 4 TTGGTAGAGCAGAGGACTGA ACTCTCGCCTTATGAAAGCG 20 20 50.0 50.0 57.4 58.1 0.0 0.0 0.677017 35590 35941 457-657 1.000000 78.3 trnF-GAA-trnfM-CAU_p5 trnF-GAA-trnfM-CAU 5 AGTTGGTAGAGCAGAGGACT ACTCTCGCCTTATGAAAGCG 20 20 50.0 50.0 57.4 58.1 0.0 0.0 0.686239 35590 35941 459-659 1.000000 78.3 trnfM-CAU-atpE_p1 trnfM-CAU-atpE 1 AAGGCGAGAGTCATTGGTTC ACGCAAATCGAGTTCTAGGC 20 20 50.0 50.0 57.9 58.4 0.0 0.0 0.459028 36015 36078 187-210 0.942857 85.8 trnfM-CAU-atpE_p2 trnfM-CAU-atpE 2 AAGGCGAGAGTCATTGGTTC CGCAAATCGAGTTCTAGGCA 20 20 50.0 50.0 57.9 58.4 0.0 0.0 0.460177 36015 36078 186-209 0.942857 85.8 trnfM-CAU-atpE_p3 trnfM-CAU-atpE 3 CGCTTTCATAAGGCGAGAGT ACGCAAATCGAGTTCTAGGC 20 20 50.0 50.0 58.1 58.4 10.2 0.0 0.430528 36015 36078 196-219 0.942857 85.7 trnfM-CAU-atpE_p4 trnfM-CAU-atpE 4 CGCTTTCATAAGGCGAGAGT CGCAAATCGAGTTCTAGGCA 20 20 50.0 50.0 58.1 58.4 10.2 0.0 0.431677 36015 36078 195-218 0.942857 85.7 trnfM-CAU-atpE_p5 trnfM-CAU-atpE 5 GGCGAGAGTCATTGGTTCAA ACGCAAATCGAGTTCTAGGC 20 20 50.0 50.0 58.2 58.4 0.0 0.0 0.550012 36015 36078 185-208 0.942857 85.1 psbJ-psbL_p1 psbJ-psbL 1 TTCTCCCGGTAGTATCAGCC CAGCCTATACTGGGGATTGT 20 20 55.0 50.0 58.3 56.4 0.0 0.0 1.927909 43036 43160 212-226 1.000000 72.6 psbJ-psbL_p2 psbJ-psbL 2 CTCCCGGTAGTATCAGCCAT CAGCCTATACTGGGGATTGT 20 20 55.0 50.0 58.4 56.4 0.0 0.0 1.995090 43036 43160 210-224 1.000000 72.1 psbJ-psbL_p3 psbJ-psbL 3 TTCTCCCGGTAGTATCAGCC TCCGAACGAACAAAGTGTAGA 20 21 55.0 42.9 58.3 57.3 0.0 0.0 2.012903 43036 43160 245-259 1.000000 71.4 psbJ-psbL_p4 psbJ-psbL 4 CTCCCGGTAGTATCAGCCAT TCCGAACGAACAAAGTGTAGA 20 21 55.0 42.9 58.4 57.3 0.0 0.0 2.080085 43036 43160 243-257 1.000000 70.9 psbJ-psbL_p5 psbJ-psbL 5 TTCTCCCGGTAGTATCAGCC TGACACAATCAAATCCGAACG 20 21 55.0 42.9 58.3 57.2 0.0 0.0 2.103563 43036 43160 258-272 1.000000 70.4 psaJ-rpl33_p1 psaJ-rpl33 1 TTTCGACAGCACCCGTTTTA TGCGCCTATGTTTTCTGACA 20 20 45.0 45.0 58.0 57.8 0.0 4.2 0.226566 44910 45033 242-258 1.000000 86.7 psaJ-rpl33_p2 psaJ-rpl33 2 TTTCGACAGCACCCGTTTTA AAAAATTACCACTCGTGCGC 20 20 45.0 45.0 58.0 57.7 0.0 0.0 0.374681 44910 45033 257-273 1.000000 85.3 psaJ-rpl33_p3 psaJ-rpl33 3 ATATCTTTCGACAGCACCCG TGCGCCTATGTTTTCTGACA 20 20 50.0 45.0 57.8 57.8 0.0 4.2 0.402462 44910 45033 247-263 1.000000 85.2 psaJ-rpl33_p4 psaJ-rpl33 4 ATATCTTTCGACAGCACCCG AAAAATTACCACTCGTGCGC 20 20 50.0 45.0 57.8 57.7 0.0 0.0 0.550578 44910 45033 262-278 1.000000 83.8 psaJ-rpl33_p5 psaJ-rpl33 5 AGCACCCGTTTTAGCAACTT TGCGCCTATGTTTTCTGACA 20 20 45.0 45.0 58.3 57.8 0.0 4.2 0.489831 44910 45033 235-251 0.942857 82.1 clpP-psbB_p1 clpP-psbB 1 TCAACGGGTTGCCCTAAAAA GCTCCGAATCCAAAGCAAAC 20 20 45.0 50.0 57.9 58.0 6.7 0.0 0.086222 47520 48695 1671-1724 1.000000 85.1 clpP-psbB_p2 clpP-psbB 2 TGGTTCCCACATTGGAAGTG GCTCCGAATCCAAAGCAAAC 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.023432 47520 48695 2164-2217 1.000000 84.7 clpP-psbB_p3 clpP-psbB 3 TGGTTCCCACATTGGAAGTG ATGATGCGACGCTATTCCTC 20 20 50.0 50.0 58.0 57.9 0.0 22.1 0.077732 47520 48695 2306-2359 1.000000 84.0 clpP-psbB_p4 clpP-psbB 4 GGCCAAGACCGATTGTATGT GCTCCGAATCCAAAGCAAAC 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.055775 47520 48695 1856-1909 0.971429 83.8 clpP-psbB_p5 clpP-psbB 5 AACATGGTTCGGGATTAGCC GCTCCGAATCCAAAGCAAAC 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.070170 47520 48695 2236-2289 0.971429 83.0 rps11-rpl36_p1 rps11-rpl36 1 TCCACATAGATTTTGGTTTCA TCGTAGAGGAAAGCGAATTT 21 20 33.3 40.0 53.0 54.8 0.0 0.0 9.172436 54630 54712 169-186 1.000000 47.8 rps11-rpl36_p2 rps11-rpl36 2 TCCACATAGATTTTGGTTTCA TTCGTAGAGGAAAGCGAATT 21 20 33.3 40.0 53.0 54.8 0.0 0.0 9.172436 54630 54712 170-187 1.000000 47.8 rps11-rpl36_p3 rps11-rpl36 3 TTCCACATAGATTTTGGTTTCA TCGTAGAGGAAAGCGAATTT 22 20 31.8 40.0 53.9 54.8 0.0 0.0 9.288625 54630 54712 170-187 1.000000 47.8 rps11-rpl36_p4 rps11-rpl36 4 TCCACATAGATTTTGGTTTCA AATTCGTAGAGGAAAGCGAA 21 20 33.3 40.0 53.0 54.8 0.0 0.0 9.172436 54630 54712 172-189 1.000000 47.7 rps11-rpl36_p5 rps11-rpl36 5 TTCCACATAGATTTTGGTTTCA TTCGTAGAGGAAAGCGAATT 22 20 31.8 40.0 53.9 54.8 0.0 0.0 9.288625 54630 54712 171-188 1.000000 47.7 rpl2_p1 rpl2 1 GAGTGTGTAGCCGCAAAAAC ACCAGATACCTACTACGGGC 20 20 50.0 55.0 58.0 58.0 0.0 0.0 0.039877 58726 60001 1552-1639 1.000000 87.0 rpl2_p2 rpl2 2 GAGTGTGTAGCCGCAAAAAC CAGATACCTACTACGGGCCA 20 20 50.0 55.0 58.0 58.0 0.0 4.4 0.041293 58726 60001 1550-1637 1.000000 87.0 rpl2_p3 rpl2 3 GAGTGTGTAGCCGCAAAAAC TCCATTCAAGTTGAACGCCA 20 20 50.0 45.0 58.0 58.0 0.0 20.3 0.058149 58726 60001 1596-1683 1.000000 86.8 rpl2_p4 rpl2 4 GAGTGTGTAGCCGCAAAAAC GAATGGTTAAAGCGCCCAAC 20 20 50.0 50.0 58.0 58.0 0.0 2.3 0.041615 58726 60001 1972-2059 1.000000 86.3 rpl2_p5 rpl2 5 AAGGAACGTCCCTTAGCTCT ACCAGATACCTACTACGGGC 20 20 50.0 55.0 58.1 58.0 3.3 0.0 0.067482 58726 60001 2166-2253 1.000000 86.1 rps15-psaC_p1 rps15-psaC 1 CAAAGGAGTCTGCGGAAACT AATTTTGACTGAATGAGCCA 20 20 50.0 35.0 58.1 53.3 0.0 0.0 4.770586 80732 81037 400-454 1.000000 53.8 rps15-psaC_p2 rps15-psaC 2 TGATCAAACGGAAGCGACTT AATTTTGACTGAATGAGCCA 20 20 45.0 35.0 57.8 53.3 0.0 0.0 4.818639 80732 81037 378-432 1.000000 53.5 rps15-psaC_p3 rps15-psaC 3 TTGATCAAACGGAAGCGACT AATTTTGACTGAATGAGCCA 20 20 45.0 35.0 57.8 53.3 5.4 0.0 4.818639 80732 81037 379-433 1.000000 53.5 rps15-psaC_p4 rps15-psaC 4 CAAAGGAGTCTGCGGAAACT GTACAACCAATGCATGTATCA 20 21 50.0 38.1 58.1 54.3 0.0 0.0 4.847557 80732 81037 423-477 1.000000 53.2 rps15-psaC_p5 rps15-psaC 5 CAAAGGAGTCTGCGGAAACT AAATTTTGACTGAATGAGCCA 20 21 50.0 33.3 58.1 54.2 0.0 0.0 4.868013 80732 81037 401-455 1.000000 53.1 psaC_p1 psaC 1 TAGATCGGGCTACTCTGGTG TCGTTGGTTGGGTGCAATTA 20 20 55.0 45.0 58.0 58.0 0.0 0.0 0.034680 81038 81283 1644-1686 1.000000 88.1 psaC_p2 psaC 2 CAATGCAAGAGACGTGCTTG TCGTTGGTTGGGTGCAATTA 20 20 50.0 45.0 58.0 58.0 18.6 0.0 0.057593 81038 81283 1709-1751 1.000000 87.8 psaC_p3 psaC 3 TAGATCGGGCTACTCTGGTG CGTTGGTTGGGTGCAATTAC 20 20 55.0 50.0 58.0 57.9 0.0 0.0 0.076253 81038 81283 1643-1685 1.000000 87.8 psaC_p4 psaC 4 TAGATCGGGCTACTCTGGTG TATTCGTTGGTTGGGTGCAA 20 20 55.0 45.0 58.0 58.0 0.0 0.0 0.034680 81038 81283 1647-1689 0.971429 86.9 psaC_p5 psaC 5 CAATGCAAGAGACGTGCTTG TATTCGTTGGTTGGGTGCAA 20 20 50.0 45.0 58.0 58.0 18.6 0.0 0.057593 81038 81283 1712-1754 0.971429 86.5 psaC-ccsA_p1 psaC-ccsA 1 ACCACTCGTAGTATGGGACT TGTTTGGATATGCTATTTTGGTGT 20 24 50.0 33.3 57.2 57.2 0.0 0.0 5.671793 81284 81389 205-235 1.000000 50.4 psaC-ccsA_p2 psaC-ccsA 2 AACCACTCGTAGTATGGGACT TGTTTGGATATGCTATTTTGGTGT 21 24 47.6 33.3 57.9 57.2 0.0 0.0 5.946427 81284 81389 206-236 1.000000 50.3 psaC-ccsA_p3 psaC-ccsA 3 CGAAACCACTCGTAGTATGGG TGTTTGGATATGCTATTTTGGTGT 21 24 52.4 33.3 58.2 57.2 0.0 0.0 6.043241 81284 81389 209-239 1.000000 50.3 psaC-ccsA_p4 psaC-ccsA 4 ACCACTCGTAGTATGGGACT TTGTTTGGATATGCTATTTTGGTGT 20 25 50.0 32.0 57.2 57.8 0.0 0.0 6.061193 81284 81389 206-236 1.000000 50.3 psaC-ccsA_p5 psaC-ccsA 5 ACCACTCGTAGTATGGGACT TGTTTGGATATGCTATTTTGGTGTT 20 25 50.0 32.0 57.2 57.8 0.0 0.0 6.061193 81284 81389 215-215 0.085714 4.5 trnL-AUG-ycf1_p1 trnL-AUG-ycf1 1 TTGCACCCAACCAACGAATA CGGCTGATGGAAGTCGTAAT 20 20 45.0 50.0 58.0 57.8 0.0 0.0 0.242408 82455 82850 879-914 1.000000 86.1 trnL-AUG-ycf1_p2 trnL-AUG-ycf1 2 TAATTGCACCCAACCAACGA CGGCTGATGGAAGTCGTAAT 20 20 45.0 50.0 58.0 57.8 0.0 0.0 0.242408 82455 82850 882-917 1.000000 86.0 trnL-AUG-ycf1_p3 trnL-AUG-ycf1 3 AGAGCAGCGTGTCTACCTAT CGGCTGATGGAAGTCGTAAT 20 20 50.0 50.0 57.9 57.8 0.0 0.0 0.285118 82455 82850 468-504 0.971429 85.9 trnL-AUG-ycf1_p4 trnL-AUG-ycf1 4 GTAATTGCACCCAACCAACG CGGCTGATGGAAGTCGTAAT 20 20 50.0 50.0 57.9 57.8 0.0 0.0 0.283982 82455 82850 883-918 1.000000 85.7 trnL-AUG-ycf1_p5 trnL-AUG-ycf1 5 CCGTGAGTAAACATAGCGCT CGGCTGATGGAAGTCGTAAT 20 20 50.0 50.0 58.1 57.8 17.3 0.0 0.302498 82455 82850 910-941 0.771429 75.3