feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 3 77 -1 75 LSC 0.000000 0 1 300 8 no 0.250000 2 0.500000 0.000000 1.000000 25.600000 IGS_001 igs trnH|psbA trnH-psbA 78 530 0 453 LSC 0.035767 31 16 300 168 yes 1.000000 4 1.000000 0.035498 0.997792 82.000000 psbA gene psbA psbA 531 1592 -1 1062 LSC 0.003453 7 0 18 50 no 1.000000 4 1.000000 0.003453 1.000000 47.500000 IGS_002 igs psbA|trnK psbA-trnK 1593 1857 0 265 LSC 0.007547 4 0 71 52 no 1.000000 4 1.000000 0.007547 1.000000 46.700000 trnK_part2 tRNA trnK trnK 1858 1892 -1 35 LSC 0.000000 0 0 117 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 matK gene matK matK 2174 3691 -1 1518 LSC 0.007137 21 0 24 2 no 1.000000 4 1.000000 0.007137 1.000000 48.800000 IGS_005 igs matK|trnK matK-trnK 3692 4414 0 723 LSC 0.008368 12 7 243 43 no 1.000000 4 1.000000 0.008374 0.991701 53.700000 trnK_part1 tRNA trnK trnK 4415 4451 -1 37 LSC 0.000000 0 0 127 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_006 igs trnK|rps16 trnK-rps16 4452 5322 0 871 LSC 0.009827 17 14 164 29 no 1.000000 4 1.000000 0.009898 0.986223 54.300000 rps16 gene rps16 rps16 5323 6452 -1 1130 LSC 0.006637 15 6 45 90 no 1.000000 4 1.000000 0.006652 1.000000 52.400000 IGS_007 igs rps16|trnQ rps16-trnQ 6453 8080 0 1628 LSC 0.008415 27 33 52 88 yes 1.000000 4 1.000000 0.008286 0.996929 55.500000 trnQ tRNA trnQ trnQ 8081 8152 -1 72 LSC 0.000000 0 0 12 16 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_008 igs trnQ|psbK trnQ-psbK 8153 8506 0 354 LSC 0.001412 1 0 84 14 no 0.250000 2 0.500000 0.001412 1.000000 26.600000 psbK gene psbK psbK 8507 8692 1 186 LSC 0.008065 3 0 300 0 no 0.500000 3 0.666667 0.008065 1.000000 33.800000 IGS_009 igs psbK|psbI psbK-psbI 8693 9068 0 376 LSC 0.012129 9 8 48 95 no 1.000000 4 1.000000 0.012201 0.981383 53.100000 psbI gene psbI psbI 9069 9179 1 111 LSC 0.004717 1 5 24 117 no 0.500000 3 0.666667 0.004717 0.954955 37.200000 IGS_010 igs psbI|trnS psbI-trnS 9180 9328 0 149 LSC 0.003401 1 2 15 0 no 0.500000 3 0.666667 0.003401 0.986577 31.700000 trnS tRNA trnS trnS 9329 9416 -1 88 LSC 0.005682 1 0 31 25 no 0.250000 2 0.500000 0.005682 1.000000 29.300000 IGS_011 igs trnS|trnG trnS-trnG 9417 10172 0 756 LSC 0.009505 14 15 87 87 no 1.000000 4 1.000000 0.009563 0.997354 59.100000 trnG_part1 tRNA trnG trnG 10173 10195 1 23 LSC 0.000000 0 0 76 64 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 trnG_part2 tRNA trnG trnG 10923 10971 1 49 LSC 0.000000 0 0 84 25 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_014 igs trnG|trnR trnG-trnR 10972 11138 0 167 LSC 0.002994 1 0 133 158 no 0.250000 2 0.500000 0.002994 1.000000 35.500000 trnR tRNA trnR trnR 11139 11210 1 72 LSC 0.000000 0 0 141 86 no 0.000000 1 0.000000 0.000000 1.000000 25.200000 IGS_015 igs trnR|atpA trnR-atpA 11211 11415 0 205 LSC 0.013821 5 25 213 300 yes 1.000000 4 1.000000 0.015515 0.878049 64.600000 atpA gene atpA atpA 11416 12933 -1 1518 LSC 0.002306 7 0 12 293 no 1.000000 4 1.000000 0.002306 1.000000 46.200000 IGS_016 igs atpA|atpF atpA-atpF 12934 12992 0 59 LSC 0.000000 0 4 20 234 no 0.500000 3 0.666667 0.000000 0.966102 34.400000 atpF gene atpF atpF 12993 14326 -1 1334 LSC 0.004145 11 10 79 75 no 1.000000 4 1.000000 0.004151 0.993253 53.000000 IGS_017 igs atpF|atpH atpF-atpH 14327 14789 0 463 LSC 0.025253 23 6 249 300 yes 1.000000 4 1.000000 0.025400 0.997840 74.900000 atpH gene atpH atpH 14790 15035 -1 246 LSC 0.000000 0 0 12 64 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_018 igs atpH|atpI atpH-atpI 15036 16238 0 1203 LSC 0.002909 7 5 258 300 no 1.000000 4 1.000000 0.002917 1.000000 61.300000 atpI gene atpI atpI 16239 16982 -1 744 LSC 0.002016 3 0 49 277 no 1.000000 4 1.000000 0.002016 1.000000 48.800000 IGS_019 igs atpI|rps2 atpI-rps2 16983 17211 0 229 LSC 0.000000 0 0 188 48 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 rps2 gene rps2 rps2 17212 17922 -1 711 LSC 0.003516 5 0 300 4 no 1.000000 4 1.000000 0.003516 1.000000 46.500000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 17923 18121 0 199 LSC 0.015075 6 0 77 104 no 1.000000 4 1.000000 0.015075 1.000000 53.800000 rpoC2 gene rpoC2 rpoC2 18122 22315 -1 4194 LSC 0.002384 20 0 37 227 no 1.000000 4 1.000000 0.002384 1.000000 43.200000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 22316 22498 0 183 LSC 0.000000 0 0 300 44 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 rpoC1 gene rpoC1 rpoC1 22499 25305 -1 2807 LSC 0.003028 17 0 300 1 no 1.000000 4 1.000000 0.003028 1.000000 43.200000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 25306 25331 0 26 LSC 0.019231 1 0 230 300 no 0.250000 2 0.500000 0.019231 1.000000 51.900000 rpoB gene rpoB rpoB 25332 28544 -1 3213 LSC 0.001089 7 0 24 18 no 1.000000 4 1.000000 0.001089 1.000000 42.400000 IGS_023 igs rpoB|trnC rpoB-trnC 28545 29602 0 1058 LSC 0.009137 19 8 78 231 no 1.000000 4 1.000000 0.009163 1.000000 56.800000 trnC tRNA trnC trnC 29603 29673 1 71 LSC 0.000000 0 0 40 160 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_024 igs trnC|petN trnC-petN 29674 30396 0 723 LSC 0.002075 3 1 111 112 no 0.500000 3 0.666667 0.002076 1.000000 44.300000 petN gene petN petN 30397 30486 1 90 LSC 0.000000 0 0 250 22 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 IGS_025 igs petN|psbM petN-psbM 30487 31583 0 1097 LSC 0.006281 13 20 300 300 yes 1.000000 4 1.000000 0.006315 0.990884 64.900000 psbM gene psbM psbM 31584 31688 -1 105 LSC 0.000000 0 0 135 292 no 0.000000 1 0.000000 0.000000 1.000000 28.900000 IGS_026 igs psbM|trnD psbM-trnD 31689 32232 0 544 LSC 0.002757 3 1 240 300 no 1.000000 4 1.000000 0.002760 1.000000 59.700000 trnD tRNA trnD trnD 32233 32306 -1 74 LSC 0.000000 0 0 135 300 no 0.000000 1 0.000000 0.000000 1.000000 28.900000 IGS_027 igs trnD|trnY trnD-trnY 32307 32788 0 482 LSC 0.001094 1 25 209 266 no 0.500000 3 0.666667 0.001094 0.948133 52.100000 trnY tRNA trnY trnY 32789 32872 -1 84 LSC 0.000000 0 0 1 182 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_028 igs trnY|trnE trnY-trnE 32873 32931 0 59 LSC 0.000000 0 0 85 123 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 trnE tRNA trnE trnE 32932 33004 -1 73 LSC 0.000000 0 0 144 50 no 0.000000 1 0.000000 0.000000 1.000000 22.500000 IGS_029 igs trnE|trnT trnE-trnT 33005 33814 0 810 LSC 0.006996 10 6 217 132 no 1.000000 4 1.000000 0.006612 1.000000 59.200000 trnT tRNA trnT trnT 33815 33886 1 72 LSC 0.000000 0 0 0 60 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_030 igs trnT|psbD trnT-psbD 33887 35124 0 1238 LSC 0.010357 25 16 72 300 no 1.000000 4 1.000000 0.010360 0.987884 57.500000 psbD gene psbD psbD 35125 36186 1 1062 LSC 0.000942 2 0 2 216 no 0.500000 3 0.666667 0.000942 1.000000 35.200000 psbC gene psbC psbC 36134 37555 1 1422 LSC 0.002110 6 0 88 53 no 1.000000 4 1.000000 0.002110 1.000000 49.200000 IGS_032 igs psbC|trnS psbC-trnS 37556 37792 0 237 LSC 0.028129 11 0 228 111 yes 1.000000 4 1.000000 0.028129 1.000000 64.300000 trnS tRNA trnS trnS 37793 37885 -1 93 LSC 0.000000 0 0 15 18 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_033 igs trnS|psbZ trnS-psbZ 37886 38233 0 348 LSC 0.005747 4 11 108 193 yes 1.000000 4 1.000000 0.005810 1.000000 54.300000 psbZ gene psbZ psbZ 38234 38422 1 189 LSC 0.000000 0 0 58 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_034 igs psbZ|trnG psbZ-trnG 38423 39015 0 593 LSC 0.015616 18 30 247 62 yes 1.000000 4 1.000000 0.015403 0.989882 64.600000 IGS_035 igs trnG|trnM trnG-trnM 39087 39255 0 169 LSC 0.008876 3 4 8 181 no 1.000000 4 1.000000 0.008977 0.994083 47.000000 trnM tRNA trnM trnM 39256 39329 -1 74 LSC 0.000000 0 0 11 107 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_036 igs trnM|rps14 trnM-rps14 39330 39491 0 162 LSC 0.007202 2 1 85 207 no 1.000000 4 1.000000 0.005150 1.000000 49.400000 rps14 gene rps14 rps14 39492 39794 -1 303 LSC 0.001650 1 0 1 125 no 0.250000 2 0.500000 0.001650 1.000000 24.700000 IGS_037 igs rps14|psaB rps14-psaB 39795 39937 0 143 LSC 0.003497 1 14 95 300 no 0.500000 3 0.666667 0.003623 1.000000 43.200000 psaB gene psaB psaB 39938 42142 -1 2205 LSC 0.001134 5 0 17 283 no 1.000000 4 1.000000 0.001134 1.000000 44.300000 IGS_038 igs psaB|psaA psaB-psaA 42143 42167 0 25 LSC 0.000000 0 0 154 258 no 0.000000 1 0.000000 0.000000 1.000000 30.300000 psaA gene psaA psaA 42168 44420 -1 2253 LSC 0.001332 6 0 179 19 no 1.000000 4 1.000000 0.001332 1.000000 44.500000 IGS_039 igs psaA|ycf3 psaA-ycf3 44421 45068 0 648 LSC 0.006173 8 10 300 300 yes 1.000000 4 1.000000 0.006212 0.998457 64.800000 ycf3 gene ycf3 ycf3 45069 47103 -1 2035 LSC 0.003767 14 1 53 73 no 1.000000 4 1.000000 0.003769 0.999509 49.200000 IGS_040 igs ycf3|trnS ycf3-trnS 47104 47994 0 891 LSC 0.006865 12 17 139 15 no 1.000000 4 1.000000 0.006865 0.980920 51.300000 trnS tRNA trnS trnS 47995 48081 1 87 LSC 0.005747 1 0 215 80 no 0.250000 2 0.500000 0.005747 1.000000 33.500000 IGS_041 igs trnS|rps4 trnS-rps4 48082 48376 0 295 LSC 0.005085 3 0 71 87 no 0.500000 3 0.666667 0.005085 1.000000 37.000000 rps4 gene rps4 rps4 48377 48982 -1 606 LSC 0.001650 2 0 1 55 no 0.500000 3 0.666667 0.001650 1.000000 35.600000 IGS_042 igs rps4|trnT rps4-trnT 48983 49342 0 360 LSC 0.011111 6 6 204 135 no 1.000000 4 1.000000 0.006055 0.997222 57.900000 trnT tRNA trnT trnT 49343 49415 -1 73 LSC 0.000000 0 0 181 62 no 0.000000 1 0.000000 0.000000 1.000000 23.400000 IGS_043 igs trnT|trnL trnT-trnL 49416 50425 0 1010 LSC 0.010544 20 51 254 151 yes 1.000000 4 1.000000 0.010306 0.970297 67.300000 trnL_part1 tRNA trnL trnL 50426 50460 1 35 LSC 0.000000 0 0 30 116 no 0.000000 1 0.000000 0.000000 1.000000 21.000000 trnL_part2 tRNA trnL trnL 50985 51034 1 50 LSC 0.000000 0 0 186 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_046 igs trnL|trnF trnL-trnF 51035 51404 0 370 LSC 0.006757 5 0 236 109 no 1.000000 4 1.000000 0.006757 1.000000 51.900000 trnF tRNA trnF trnF 51405 51477 1 73 LSC 0.000000 0 0 5 36 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_047 igs trnF|ndhJ trnF-ndhJ 51478 51905 0 428 LSC 0.001168 1 59 78 35 no 0.500000 3 0.666667 0.001287 1.000000 39.400000 ndhJ gene ndhJ ndhJ 51906 52382 -1 477 LSC 0.001048 1 0 300 83 no 0.250000 2 0.500000 0.001048 1.000000 34.100000 IGS_048 igs ndhJ|ndhK ndhJ-ndhK 52383 52495 0 113 LSC 0.004425 1 0 300 207 no 0.250000 2 0.500000 0.004425 1.000000 41.500000 ndhK gene ndhK ndhK 52496 53179 -1 684 LSC 0.002193 3 0 29 15 no 0.250000 2 0.500000 0.002193 1.000000 32.300000 IGS_049 igs ndhK|ndhC ndhK-ndhC 53180 53232 0 53 LSC 0.009434 1 0 300 264 no 0.250000 2 0.500000 0.009434 1.000000 45.000000 ndhC gene ndhC ndhC 53233 53595 -1 363 LSC 0.002755 2 0 37 230 no 0.500000 3 0.666667 0.002755 1.000000 34.100000 IGS_050 igs ndhC|trnV ndhC-trnV 53596 54486 0 891 LSC 0.006734 12 1 75 150 no 1.000000 4 1.000000 0.006739 1.000000 54.200000 trnV_part2 tRNA trnV trnV 54487 54523 -1 37 LSC 0.000000 0 0 12 113 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 trnV_part1 tRNA trnV trnV 55131 55169 -1 39 LSC 0.000000 0 0 267 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_053 igs trnV|trnM trnV-trnM 55170 55359 0 190 LSC 0.005263 2 0 300 172 no 0.500000 3 0.666667 0.005263 1.000000 44.700000 trnM tRNA trnM trnM 55360 55432 1 73 LSC 0.000000 0 0 135 99 no 0.000000 1 0.000000 0.000000 1.000000 26.200000 IGS_054 igs trnM|atpE trnM-atpE 55433 55683 0 251 LSC 0.009296 4 0 208 112 no 1.000000 4 1.000000 0.009296 1.000000 52.100000 atpE gene atpE atpE 55684 56085 -1 402 LSC 0.002488 2 0 40 139 no 0.500000 3 0.666667 0.002488 1.000000 35.000000 atpB gene atpB atpB 56082 57578 -1 1497 LSC 0.002004 6 0 61 194 no 1.000000 4 1.000000 0.002004 1.000000 49.700000 IGS_056 igs atpB|rbcL atpB-rbcL 57579 58356 0 778 LSC 0.001289 2 5 21 300 no 1.000000 4 1.000000 0.001292 0.994859 46.900000 rbcL gene rbcL rbcL 58357 59784 1 1428 LSC 0.002451 6 0 300 164 no 1.000000 4 1.000000 0.002451 1.000000 57.700000 IGS_057 igs rbcL|accD rbcL-accD 59785 60343 0 559 LSC 0.002683 3 6 300 192 no 1.000000 4 1.000000 0.002693 1.000000 60.400000 accD gene accD accD 60344 61741 1 1398 LSC 0.002861 8 0 135 36 no 0.500000 3 0.666667 0.002861 1.000000 39.100000 IGS_058 igs accD|psaI accD-psaI 61742 62447 0 706 LSC 0.004958 7 9 93 168 no 1.000000 4 1.000000 0.004986 1.000000 55.700000 psaI gene psaI psaI 62448 62561 1 114 LSC 0.000000 0 0 1 54 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_059 igs psaI|ycf4 psaI-ycf4 62562 62992 0 431 LSC 0.006216 5 5 115 148 no 1.000000 4 1.000000 0.006248 0.990719 54.200000 ycf4 gene ycf4 ycf4 62993 63547 1 555 LSC 0.003604 4 0 7 122 no 0.500000 3 0.666667 0.003604 1.000000 36.500000 IGS_060 igs ycf4|cemA ycf4-cemA 63548 64202 0 655 LSC 0.004141 5 13 35 300 no 1.000000 4 1.000000 0.004151 0.980153 51.000000 cemA gene cemA cemA 64203 64901 1 699 LSC 0.000715 1 0 70 221 no 0.250000 2 0.500000 0.000715 1.000000 35.400000 IGS_061 igs cemA|petA cemA-petA 64902 65130 0 229 LSC 0.002183 1 0 161 18 no 0.250000 2 0.500000 0.002183 1.000000 26.300000 petA gene petA petA 65131 66093 1 963 LSC 0.002596 5 0 7 45 no 0.500000 3 0.666667 0.002596 1.000000 36.700000 IGS_062 igs petA|psbJ petA-psbJ 66094 67161 0 1068 LSC 0.009675 18 18 16 125 yes 1.000000 4 1.000000 0.009750 1.000000 53.400000 psbJ gene psbJ psbJ 67162 67284 -1 123 LSC 0.000000 0 0 166 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_063 igs psbJ|psbL psbJ-psbL 67285 67426 0 142 LSC 0.003521 1 0 289 148 no 0.250000 2 0.500000 0.003521 1.000000 37.000000 psbL gene psbL psbL 67427 67543 -1 117 LSC 0.000000 0 0 139 31 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_064 igs psbL|psbF psbL-psbF 67544 67565 0 22 LSC 0.000000 0 0 256 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 psbF gene psbF psbF 67566 67685 -1 120 LSC 0.012500 3 0 278 300 no 0.500000 3 0.666667 0.012500 1.000000 51.900000 IGS_065 igs psbF|psbE psbF-psbE 67686 67694 0 9 LSC 0.000000 0 0 62 300 no 0.000000 1 0.000000 NA 1.000000 23.400000 psbE gene psbE psbE 67695 67946 -1 252 LSC 0.000000 0 0 71 83 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 IGS_066 igs psbE|petL psbE-petL 67947 69228 0 1282 LSC 0.006516 16 18 300 210 yes 1.000000 4 1.000000 0.006561 0.995320 64.800000 petL gene petL petL 69229 69324 1 96 LSC 0.000000 0 0 88 114 no 0.000000 1 0.000000 0.000000 1.000000 25.400000 IGS_067 igs petL|petG petL-petG 69325 69492 0 168 LSC 0.005952 2 0 184 15 no 0.250000 2 0.500000 0.005952 1.000000 28.700000 petG gene petG petG 69493 69606 1 114 LSC 0.004386 1 0 25 0 no 0.250000 2 0.500000 0.004386 1.000000 26.500000 IGS_068 igs petG|trnW petG-trnW 69607 69747 0 141 LSC 0.003546 1 0 98 115 no 0.250000 2 0.500000 0.003546 1.000000 33.300000 trnW tRNA trnW trnW 69748 69821 -1 74 LSC 0.000000 0 0 140 41 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_069 igs trnW|trnP trnW-trnP 69822 69990 0 169 LSC 0.005917 2 0 214 126 no 0.500000 3 0.666667 0.005917 1.000000 41.700000 trnP tRNA trnP trnP 69991 70064 -1 74 LSC 0.000000 0 0 14 52 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_070 igs trnP|psaJ trnP-psaJ 70065 70426 0 362 LSC 0.006906 5 7 88 134 no 1.000000 4 1.000000 0.007014 0.988950 52.300000 psaJ gene psaJ psaJ 70427 70561 1 135 LSC 0.003704 1 0 36 35 no 0.250000 2 0.500000 0.003704 1.000000 28.700000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 70562 71003 0 442 LSC 0.003394 3 1 0 7 no 1.000000 4 1.000000 0.003396 1.000000 43.100000 rpl33 gene rpl33 rpl33 71004 71204 1 201 LSC 0.007463 3 0 35 105 no 0.500000 3 0.666667 0.007463 1.000000 36.000000 IGS_072 igs rpl33|rps18 rpl33-rps18 71205 71403 0 199 LSC 0.009213 3 0 138 300 no 1.000000 4 1.000000 0.009213 1.000000 53.900000 rps18 gene rps18 rps18 71404 71709 1 306 LSC 0.000000 0 0 31 78 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 IGS_073 igs rps18|rpl20 rps18-rpl20 71710 71986 0 277 LSC 0.009158 5 9 300 45 no 1.000000 4 1.000000 0.009269 0.981949 50.600000 rpl20 gene rpl20 rpl20 71987 72340 -1 354 LSC 0.008475 6 0 88 46 no 1.000000 4 1.000000 0.008475 1.000000 48.000000 IGS_074 igs rpl20|rps12 rpl20-rps12 72341 73083 0 743 LSC 0.005384 8 5 13 172 no 1.000000 4 1.000000 0.005402 1.000000 49.300000 rps12_part1 gene rps12 rps12 73084 73209 -1 126 LSC 0.000000 0 0 222 46 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 IGS_075 igs rps12|clpP1 rps12-clpP1 73210 73383 0 174 LSC 0.003311 1 23 300 132 no 0.500000 3 0.666667 0.003311 0.867816 41.700000 clpP1 gene clpP1 clpP1 73384 75474 -1 2091 LSC 0.004386 17 16 127 33 no 1.000000 4 1.000000 0.004003 0.998087 48.800000 IGS_076 igs clpP1|psbB clpP1-psbB 75475 75912 0 438 LSC 0.005734 5 3 86 203 no 1.000000 4 1.000000 0.005744 0.993151 51.500000 psbB gene psbB psbB 75913 77439 1 1527 LSC 0.001965 6 0 80 71 no 1.000000 4 1.000000 0.001965 1.000000 50.400000 IGS_077 igs psbB|psbT psbB-psbT 77440 77626 0 187 LSC 0.011586 4 9 5 300 no 1.000000 4 1.000000 0.009939 1.000000 51.400000 psbT gene psbT psbT 77627 77734 1 108 LSC 0.000000 0 0 54 300 no 0.000000 1 0.000000 0.000000 1.000000 22.800000 IGS_078 igs psbT|psbN psbT-psbN 77735 77794 0 60 LSC 0.000000 0 0 162 300 no 0.000000 1 0.000000 0.000000 1.000000 30.900000 psbN gene psbN psbN 77795 77926 -1 132 LSC 0.000000 0 0 222 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_079 igs psbN|psbH psbN-psbH 77927 78030 0 104 LSC 0.000000 0 0 300 255 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbH gene psbH psbH 78031 78252 1 222 LSC 0.000000 0 0 300 33 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 IGS_080 igs psbH|petB psbH-petB 78253 78369 0 117 LSC 0.004274 1 0 300 23 no 0.250000 2 0.500000 0.004274 1.000000 28.200000 petB gene petB petB 78370 79837 1 1468 LSC 0.002391 7 11 83 3 no 1.000000 4 1.000000 0.002396 0.996594 46.400000 IGS_081 igs petB|petD petB-petD 79838 80046 0 209 LSC 0.007177 3 0 300 75 no 0.500000 3 0.666667 0.007177 1.000000 38.800000 petD gene petD petD 80047 81250 1 1204 LSC 0.002907 7 8 101 149 no 1.000000 4 1.000000 0.002919 1.000000 54.100000 IGS_082 igs petD|rpoA petD-rpoA 81251 81511 0 261 LSC 0.003968 2 11 300 177 no 1.000000 4 1.000000 0.003987 0.961686 57.400000 rpoA gene rpoA rpoA 81512 82495 -1 984 LSC 0.005589 11 0 110 85 no 1.000000 4 1.000000 0.005589 1.000000 54.000000 IGS_083 igs rpoA|rps11 rpoA-rps11 82496 82559 0 64 LSC 0.000000 0 0 82 21 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 rps11 gene rps11 rps11 82560 82976 -1 417 LSC 0.004796 4 0 146 143 no 1.000000 4 1.000000 0.004796 1.000000 54.000000 IGS_084 igs rps11|rpl36 rps11-rpl36 82977 83093 0 117 LSC 0.000000 0 0 15 26 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 rpl36 gene rpl36 rpl36 83094 83207 -1 114 LSC 0.004386 1 0 132 54 no 0.250000 2 0.500000 0.004386 1.000000 30.600000 IGS_085 igs rpl36|rps8 rpl36-rps8 83208 83697 0 490 LSC 0.009524 9 2 87 53 no 1.000000 4 1.000000 0.009543 1.000000 52.500000 rps8 gene rps8 rps8 83698 84102 -1 405 LSC 0.002469 2 0 65 24 no 0.500000 3 0.666667 0.002469 1.000000 33.800000 IGS_086 igs rps8|rpl14 rps8-rpl14 84103 84264 0 162 LSC 0.007202 2 19 206 42 no 1.000000 4 1.000000 0.005544 1.000000 50.800000 rpl14 gene rpl14 rpl14 84265 84633 -1 369 LSC 0.002710 2 0 28 72 no 0.250000 2 0.500000 0.002710 1.000000 28.900000 IGS_087 igs rpl14|rpl16 rpl14-rpl16 84634 84763 0 130 LSC 0.020513 5 12 300 236 yes 1.000000 4 1.000000 0.019072 0.992308 71.900000 rpl16 gene rpl16 rpl16 84764 86094 -1 1331 LSC 0.005138 13 6 41 59 no 1.000000 4 1.000000 0.004898 0.998497 50.800000 IGS_088 igs rpl16|rps3 rpl16-rps3 86095 86242 0 148 LSC 0.018018 4 0 43 33 no 1.000000 4 1.000000 0.018018 1.000000 51.500000 rps3 gene rps3 rps3 86243 86902 -1 660 LSC 0.006818 9 0 5 23 no 1.000000 4 1.000000 0.006818 1.000000 48.900000 rpl22 gene rpl22 rpl22 86887 87372 -1 486 LSC 0.002058 2 12 169 253 no 0.250000 2 0.500000 0.002110 1.000000 44.300000 IGS_090 igs rpl22|rps19 rpl22-rps19 87373 87417 0 45 IRb 0.000000 0 0 300 208 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps19 gene rps19 rps19 87418 87696 -1 279 IRb 0.001792 1 0 300 15 no 0.250000 2 0.500000 0.001792 1.000000 25.800000 IGS_091 igs rps19|rpl2 rps19-rpl2 87697 87764 0 68 IRb 0.007353 1 0 70 30 no 0.250000 2 0.500000 0.007353 1.000000 30.800000 rpl2 gene rpl2 rpl2 87765 89259 -1 1495 IRb 0.000669 2 6 52 15 no 0.250000 2 0.500000 0.000672 1.000000 31.800000 IGS_092 igs rpl2|rpl23 rpl2-rpl23 89260 89277 0 18 IRb 0.027778 1 0 300 300 no 0.250000 2 0.500000 NA 1.000000 57.900000 rpl23 gene rpl23 rpl23 89278 89559 -1 282 IRb 0.000000 0 0 2 300 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_093 igs rpl23|trnI rpl23-trnI 89560 89724 0 165 IRb 0.000000 0 0 284 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_094 igs trnI|ycf2 trnI-ycf2 89799 89886 0 88 IRb 0.000000 0 0 300 240 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 89887 96756 1 6870 IRb 0.000801 11 24 300 300 no 1.000000 4 1.000000 0.000802 0.999127 53.500000 IGS_095 igs ycf2|trnL ycf2-trnL 96757 97757 0 1001 IRb 0.003164 5 1 300 300 no 0.500000 3 0.666667 0.003165 1.000000 51.500000 IGS_096 igs trnL|ndhB trnL-ndhB 97839 98426 0 588 IRb 0.000000 0 0 142 300 no 0.000000 1 0.000000 0.000000 1.000000 35.400000 ndhB gene ndhB ndhB 98427 100640 -1 2214 IRb 0.000452 2 8 300 134 no 1.000000 4 1.000000 0.000452 1.000000 53.100000 IGS_097 igs ndhB|rps7 ndhB-rps7 100641 100962 0 322 IRb 0.001553 1 0 92 300 no 0.250000 2 0.500000 0.001553 1.000000 31.900000 rps7 gene rps7 rps7 100963 101430 -1 468 IRb 0.000000 0 0 187 300 no 0.000000 1 0.000000 0.000000 1.000000 36.300000 IGS_098 igs rps7|rps12 rps7-rps12 101431 101483 0 53 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 101484 102277 -1 794 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_099 igs rps12|trnV rps12-trnV 102278 104084 0 1807 IRb 0.000277 1 13 300 111 no 1.000000 4 1.000000 0.000278 0.998340 52.400000 IGS_100 igs trnV|rrn16S trnV-rrn16S 104157 104396 0 240 IRb 0.002083 1 6 300 300 no 0.500000 3 0.666667 0.002101 1.000000 47.500000 rrn16S rRNA rrn16S rrn16S 104397 105887 1 1491 IRb 0.000000 0 0 200 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_101 igs rrn16S|trnI rrn16S-trnI 105888 106181 0 294 IRb 0.000000 0 1 300 300 no 0.250000 2 0.500000 0.000000 1.000000 38.800000 trnI_part1 tRNA trnI trnI 106182 106223 1 42 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 107179 107213 1 35 IRb 0.000000 0 0 264 59 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_104 igs trnI|trnA trnI-trnA 107214 107283 0 70 IRb 0.007143 1 0 299 300 no 0.250000 2 0.500000 0.007143 1.000000 43.400000 trnA_part1 tRNA trnA trnA 107284 107321 1 38 IRb 0.000000 0 0 10 300 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 trnA_part2 tRNA trnA trnA 108162 108196 1 35 IRb 0.000000 0 0 300 60 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_107 igs trnA|rrn23S trnA-rrn23S 108197 108359 0 163 IRb 0.003067 1 0 300 300 no 0.250000 2 0.500000 0.003067 1.000000 40.600000 rrn23S rRNA rrn23S rrn23S 108360 111169 1 2810 IRb 0.000178 1 0 102 300 no 0.250000 2 0.500000 0.000178 1.000000 34.700000 IGS_108 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 111170 111267 0 98 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 111268 111370 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_109 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 111371 111626 0 256 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 111627 111747 1 121 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_110 igs rrn5S|trnR rrn5S-trnR 111748 111996 0 249 IRb 0.000000 0 1 300 139 no 0.250000 2 0.500000 0.000000 1.000000 34.300000 trnR tRNA trnR trnR 111997 112070 1 74 IRb 0.000000 0 0 300 65 no 0.000000 1 0.000000 0.000000 1.000000 23.600000 IGS_111 igs trnR|trnN trnR-trnN 112071 112682 0 612 IRb 0.007898 9 1 300 300 yes 1.000000 4 1.000000 0.007909 0.998366 64.300000 trnN tRNA trnN trnN 112683 112754 -1 72 IRb 0.000000 0 0 41 300 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_112 igs trnN|ycf1 trnN-ycf1 112755 113107 0 353 IRb 0.000000 0 18 113 221 no 0.000000 2 0.000000 0.000000 0.949008 33.100000 ycf1 gene ycf1 ycf1 113108 114231 1 1124 IRb 0.002669 6 0 300 8 no 1.000000 4 1.000000 0.002669 1.000000 46.200000 ndhF gene ndhF ndhF 114165 116393 -1 2229 SSC 0.005159 23 0 28 3 no 1.000000 4 1.000000 0.005159 1.000000 46.100000 IGS_114 igs ndhF|rpl32 ndhF-rpl32 116394 117399 0 1006 SSC 0.022200 42 14 120 53 yes 1.000000 4 1.000000 0.021358 0.998012 64.500000 rpl32 gene rpl32 rpl32 117400 117552 1 153 SSC 0.006536 2 0 8 14 no 0.250000 2 0.500000 0.006536 1.000000 28.600000 IGS_115 igs rpl32|trnL rpl32-trnL 117553 118666 0 1114 SSC 0.013249 28 44 36 167 no 1.000000 4 1.000000 0.013209 0.988330 59.900000 IGS_116 igs trnL|ccsA trnL-ccsA 118747 118850 0 104 SSC 0.009615 2 0 259 74 no 0.500000 3 0.666667 0.009615 1.000000 40.400000 ccsA gene ccsA ccsA 118851 119810 1 960 SSC 0.006250 12 0 3 17 no 1.000000 4 1.000000 0.006250 1.000000 48.300000 IGS_117 igs ccsA|ndhD ccsA-ndhD 119811 120120 0 310 SSC 0.034946 21 4 51 249 yes 1.000000 4 1.000000 0.035320 0.993548 67.100000 ndhD gene ndhD ndhD 120121 121650 -1 1530 SSC 0.001961 6 0 43 4 no 1.000000 4 1.000000 0.001961 1.000000 45.400000 IGS_118 igs ndhD|psaC ndhD-psaC 121651 121788 0 138 SSC 0.019465 5 8 91 300 yes 1.000000 4 1.000000 0.017687 0.992754 63.200000 psaC gene psaC psaC 121789 122034 -1 246 SSC 0.000000 0 0 21 150 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_119 igs psaC|ndhE psaC-ndhE 122035 122267 0 233 SSC 0.006438 3 0 267 43 no 0.500000 3 0.666667 0.006438 1.000000 35.900000 ndhE gene ndhE ndhE 122268 122573 -1 306 SSC 0.001634 1 0 25 53 no 0.250000 2 0.500000 0.001634 1.000000 26.600000 IGS_120 igs ndhE|ndhG ndhE-ndhG 122574 122831 0 258 SSC 0.012274 6 0 262 109 no 1.000000 4 1.000000 0.012274 1.000000 54.100000 ndhG gene ndhG ndhG 122832 123368 -1 537 SSC 0.006518 7 0 108 21 no 1.000000 4 1.000000 0.006518 1.000000 48.600000 IGS_121 igs ndhG|ndhI ndhG-ndhI 123369 123657 0 289 SSC 0.005190 3 9 95 300 no 1.000000 4 1.000000 0.005246 1.000000 51.900000 ndhI gene ndhI ndhI 123658 124161 -1 504 SSC 0.000000 0 0 165 24 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_122 igs ndhI|ndhA ndhI-ndhA 124162 124242 0 81 SSC 0.024691 4 0 300 197 yes 1.000000 4 1.000000 0.024691 1.000000 69.600000 ndhA gene ndhA ndhA 124243 126452 -1 2210 SSC 0.004902 21 6 22 115 no 1.000000 4 1.000000 0.004910 1.000000 47.600000 IGS_123 igs ndhA|ndhH ndhA-ndhH 126453 126453 0 1 SSC 0.000000 0 0 86 114 no 0.000000 1 0.000000 NA 1.000000 25.200000 ndhH gene ndhH ndhH 126454 127635 -1 1182 SSC 0.003807 9 0 87 0 no 1.000000 4 1.000000 0.003807 1.000000 46.400000 IGS_124 igs ndhH|rps15 ndhH-rps15 127636 127738 0 103 SSC 0.012945 2 0 0 19 no 0.500000 3 0.666667 0.012945 1.000000 36.400000 rps15 gene rps15 rps15 127739 128011 -1 273 SSC 0.007326 4 0 25 71 no 0.500000 3 0.666667 0.007326 1.000000 35.100000 IGS_125 igs rps15|ycf1 rps15-ycf1 128012 128361 0 350 SSC 0.012857 9 0 4 33 no 1.000000 4 1.000000 0.012857 1.000000 47.800000 ycf1 gene ycf1 ycf1 128362 133725 -1 5364 SSC 0.005531 59 0 8 300 no 1.000000 4 1.000000 0.005531 1.000000 42.000000 IGS_126 igs ycf1|trnN ycf1-trnN 133726 134078 0 353 IRa 0.000000 0 18 221 113 no 0.000000 2 0.000000 0.000000 0.949008 33.100000 trnN tRNA trnN trnN 134079 134150 1 72 IRa 0.000000 0 0 300 41 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_127 igs trnN|trnR trnN-trnR 134151 134762 0 612 IRa 0.007898 9 1 300 300 yes 1.000000 4 1.000000 0.007909 0.998366 64.300000 trnR tRNA trnR trnR 134763 134836 -1 74 IRa 0.000000 0 0 65 300 no 0.000000 1 0.000000 0.000000 1.000000 23.600000 IGS_128 igs trnR|rrn5S trnR-rrn5S 134837 135085 0 249 IRa 0.000000 0 1 139 300 no 0.250000 2 0.500000 0.000000 1.000000 34.300000 rrn5S rRNA rrn5S rrn5S 135086 135206 -1 121 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_129 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 135207 135462 0 256 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 135463 135565 -1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_130 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 135566 135663 0 98 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 135664 138473 -1 2810 IRa 0.000178 1 0 300 102 no 0.250000 2 0.500000 0.000178 1.000000 34.700000 IGS_131 igs rrn23S|trnA rrn23S-trnA 138474 138636 0 163 IRa 0.003067 1 0 300 300 no 0.250000 2 0.500000 0.003067 1.000000 40.600000 trnA_part2 tRNA trnA trnA 138637 138671 -1 35 IRa 0.000000 0 0 60 300 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 trnA_part1 tRNA trnA trnA 139512 139549 -1 38 IRa 0.000000 0 0 300 10 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_134 igs trnA|trnI trnA-trnI 139550 139619 0 70 IRa 0.007143 1 0 300 299 no 0.250000 2 0.500000 0.007143 1.000000 43.400000 trnI_part2 tRNA trnI trnI 139620 139654 -1 35 IRa 0.000000 0 0 59 264 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 trnI_part1 tRNA trnI trnI 140610 140651 -1 42 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_137 igs trnI|rrn16S trnI-rrn16S 140652 140945 0 294 IRa 0.000000 0 1 300 300 no 0.250000 2 0.500000 0.000000 1.000000 38.800000 rrn16S rRNA rrn16S rrn16S 140946 142436 -1 1491 IRa 0.000000 0 0 300 200 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_138 igs rrn16S|trnV rrn16S-trnV 142437 142676 0 240 IRa 0.002083 1 6 300 300 no 0.500000 3 0.666667 0.002101 1.000000 47.500000 IGS_139 igs trnV|rps12 trnV-rps12 142749 144555 0 1807 IRa 0.000277 1 13 111 300 no 1.000000 4 1.000000 0.000278 0.998340 52.400000 rps12_part2 gene rps12 rps12 144556 145349 1 794 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_140 igs rps12|rps7 rps12-rps7 145350 145402 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 145403 145870 1 468 IRa 0.000000 0 0 300 187 no 0.000000 1 0.000000 0.000000 1.000000 36.300000 IGS_141 igs rps7|ndhB rps7-ndhB 145871 146192 0 322 IRa 0.001553 1 0 300 92 no 0.250000 2 0.500000 0.001553 1.000000 31.900000 ndhB gene ndhB ndhB 146193 148406 1 2214 IRa 0.000452 2 8 134 300 no 1.000000 4 1.000000 0.000452 1.000000 53.100000 IGS_142 igs ndhB|trnL ndhB-trnL 148407 148994 0 588 IRa 0.000000 0 0 300 142 no 0.000000 1 0.000000 0.000000 1.000000 35.400000 IGS_143 igs trnL|ycf2 trnL-ycf2 149076 150076 0 1001 IRa 0.003164 5 1 300 300 no 0.500000 3 0.666667 0.003165 1.000000 51.500000 ycf2 gene ycf2 ycf2 150077 156946 -1 6870 IRa 0.000801 11 24 300 300 no 1.000000 4 1.000000 0.000802 0.999127 53.500000 IGS_144 igs ycf2|trnI ycf2-trnI 156947 157034 0 88 IRa 0.000000 0 0 240 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_145 igs trnI|rpl23 trnI-rpl23 157109 157273 0 165 IRa 0.000000 0 0 300 284 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 157274 157555 1 282 IRa 0.000000 0 0 300 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_146 igs rpl23|rpl2 rpl23-rpl2 157556 157573 0 18 IRa 0.027778 1 0 300 300 no 0.250000 2 0.500000 NA 1.000000 57.900000 rpl2 gene rpl2 rpl2 157574 159068 1 1495 IRa 0.000669 2 6 15 52 no 0.250000 2 0.500000 0.000672 1.000000 31.800000 IGS_147 igs rpl2|rps19 rpl2-rps19 159069 159136 0 68 IRa 0.007353 1 0 30 70 no 0.250000 2 0.500000 0.007353 1.000000 30.800000 rps19 gene rps19 rps19 159137 159415 1 279 IRa 0.001792 1 0 15 300 no 0.250000 2 0.500000 0.001792 1.000000 25.800000 IGS_148 igs rps19|trnH rps19-trnH 159416 2 0 269 IRa 0.000000 0 1 208 83 no 0.250000 2 0.500000 0.000000 1.000000 30.100000