primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score ssrA-trnR-CCG_p1 ssrA-trnR-CCG 1 GTCGAAACCAAATCAGTCCC GGTTCGATTCCCTTCATGCT 20 20 50.0 50.0 56.7 58.0 0.0 0.0 1.318844 6233 6286 95-96 1.000000 75.3 ssrA-trnR-CCG_p2 ssrA-trnR-CCG 2 TGTCGAAACCAAATCAGTCCC GGTTCGATTCCCTTCATGCT 21 20 47.6 50.0 58.5 58.0 0.0 0.0 1.543894 6233 6286 96-97 1.000000 73.5 ssrA-trnR-CCG_p3 ssrA-trnR-CCG 3 GTCGAAACCAAATCAGTCCC GGGGTTCGATTCCCTTCATG 20 20 50.0 55.0 56.7 58.3 0.0 20.6 1.594384 6233 6286 97-98 1.000000 73.0 ssrA-trnR-CCG_p4 ssrA-trnR-CCG 4 GTCGAAACCAAATCAGTCCC ATTCTGAAAGTCGGGGGTTC 20 20 50.0 50.0 56.7 57.5 0.0 0.0 1.766397 6233 6286 110-111 1.000000 70.9 ssrA-trnR-CCG_p5 ssrA-trnR-CCG 5 GTCGAAACCAAATCAGTCCC GATTCTGAAAGTCGGGGGTT 20 20 50.0 50.0 56.7 57.5 0.0 0.0 1.766397 6233 6286 111-112 1.000000 70.9 psbX-rbcS_p1 psbX-rbcS 1 TGCTGTCAAACTCGCGATAA GCTCGTAAATCATGCGCTTC 20 20 45.0 50.0 57.9 58.0 10.4 9.7 0.083697 7614 8162 801-818 1.000000 89.6 psbX-rbcS_p2 psbX-rbcS 2 TGCTGTCAAACTCGCGATAA TCGGTGGTGGTACTATTGGT 20 20 45.0 50.0 57.9 58.1 10.4 0.0 0.131740 7614 8162 1309-1326 1.000000 85.6 psbX-rbcS_p3 psbX-rbcS 3 TGCTGTCAAACTCGCGATAA GAAGCTCGTAAATCATGCGC 20 20 45.0 50.0 57.9 58.0 10.4 0.0 0.083697 7614 8162 804-804 0.500000 59.3 psbX-rbcS_p4 psbX-rbcS 4 TGCTGTCAAACTCGCGATAA ATCCGCATCCTCGTAACAAC 20 20 45.0 50.0 57.9 58.1 10.4 0.0 0.137184 7614 8162 893-893 0.500000 58.9 psbX-rbcS_p5 psbX-rbcS 5 CGTCTCTTGCAACTTCAGGT GCTCGTAAATCATGCGCTTC 20 20 50.0 50.0 58.1 58.0 0.0 9.7 0.139500 7614 8162 1160-1160 0.500000 58.9 pbf1-psbH_p1 pbf1-psbH 1 AAGCAGGTCCAAAAGCAGTA TCAGCATTTAACGGGCGTAA 20 20 45.0 45.0 57.3 57.9 0.0 0.0 0.753167 19132 19215 225-225 1.000000 76.8 pbf1-psbH_p2 pbf1-psbH 2 AAGCAGGTCCAAAAGCAGTA TTCAGCATTTAACGGGCGTA 20 20 45.0 45.0 57.3 57.9 0.0 0.0 0.753167 19132 19215 226-226 1.000000 76.8 pbf1-psbH_p3 pbf1-psbH 3 GAAGCAGGTCCAAAAGCAGT TCAGCATTTAACGGGCGTAA 20 20 50.0 45.0 58.7 57.9 0.0 0.0 0.773778 19132 19215 226-226 1.000000 76.6 pbf1-psbH_p4 pbf1-psbH 4 GAAGCAGGTCCAAAAGCAGT TTCAGCATTTAACGGGCGTA 20 20 50.0 45.0 58.7 57.9 0.0 0.0 0.773778 19132 19215 227-227 1.000000 76.6 pbf1-psbH_p5 pbf1-psbH 5 AGCAGGTCCAAAAGCAGTAT TCAGCATTTAACGGGCGTAA 20 20 45.0 45.0 57.1 57.9 0.0 0.0 0.983371 19132 19215 224-224 1.000000 75.0 ycf45-ffs_p1 ycf45-ffs 1 CCCGCATTTCAACTTGCAAT TCCACTGCTCTACCAACTGA 20 20 45.0 50.0 57.9 58.0 0.0 0.0 0.092848 22905 23575 1418-1420 1.000000 87.9 ycf45-ffs_p2 ycf45-ffs 2 CCCGCATTTCAACTTGCAAT ATCGCATCAATAAACGGCCT 20 20 45.0 45.0 57.9 58.0 0.0 0.0 0.115848 22905 23575 1706-1708 1.000000 87.6 ycf45-ffs_p3 ycf45-ffs 3 CCCGCATTTCAACTTGCAAT AACTGAGCTATCCGGGCTTA 20 20 45.0 50.0 57.9 58.2 0.0 0.0 0.293644 22905 23575 1404-1406 1.000000 86.3 ycf45-ffs_p4 ycf45-ffs 4 CCCGCATTTCAACTTGCAAT CCCCCTAGGCACAGTAGAAT 20 20 45.0 55.0 57.9 58.2 0.0 2.1 0.275353 22905 23575 1539-1539 0.500000 57.8 ycf45-ffs_p5 ycf45-ffs 5 CCCGCATTTCAACTTGCAAT ACTGAGCTATCCGGGCTTAA 20 20 45.0 50.0 57.9 58.2 0.0 0.0 0.293644 22905 23575 1405-1405 0.500000 57.7 rpoB-rps20_p1 rpoB-rps20 1 GTTTCTCCCTGCCAATTCCA AAGTTCCATTCTTTGCGGGT 20 20 50.0 45.0 58.1 58.0 0.0 0.0 0.081268 38763 39199 1702-1747 1.000000 84.4 rpoB-rps20_p2 rpoB-rps20 2 GTTTCTCCCTGCCAATTCCA AGTTCCATTCTTTGCGGGTT 20 20 50.0 45.0 58.1 58.0 0.0 0.0 0.081268 38763 39199 1701-1746 1.000000 84.4 rpoB-rps20_p3 rpoB-rps20 3 TGGTTTCTCCCTGCCAATTC AAGTTCCATTCTTTGCGGGT 20 20 50.0 45.0 58.1 58.0 0.0 0.0 0.081268 38763 39199 1704-1749 1.000000 84.4 rpoB-rps20_p4 rpoB-rps20 4 TGGTTTCTCCCTGCCAATTC AGTTCCATTCTTTGCGGGTT 20 20 50.0 45.0 58.1 58.0 0.0 0.0 0.081268 38763 39199 1703-1748 1.000000 84.4 rpoB-rps20_p5 rpoB-rps20 5 GTTTCTCCCTGCCAATTCCA TGCGGGTTATTTCGACGATT 20 20 50.0 45.0 58.1 58.0 0.0 0.0 0.089581 38763 39199 1689-1734 1.000000 84.4 petA-chlI_p1 petA-chlI 1 GCCGTGGACAAGTTTATCCA GCAAAAGCACATGCAGCATA 20 20 50.0 45.0 58.2 58.0 2.0 7.8 0.184877 44606 45179 1137-1144 1.000000 88.1 petA-chlI_p2 petA-chlI 2 GCCGTGGACAAGTTTATCCA GGTATGCATGCCGAAATTCG 20 20 50.0 50.0 58.2 58.0 2.0 18.6 0.220482 44606 45179 1401-1408 1.000000 87.3 petA-chlI_p3 petA-chlI 3 GCCGTGGACAAGTTTATCCA TCGTCATCCTGCTCGATTTG 20 20 50.0 50.0 58.2 58.1 2.0 0.0 0.257364 44606 45179 1483-1490 1.000000 86.7 petA-chlI_p4 petA-chlI 4 GCCGTGGACAAGTTTATCCA CAATTCGTCATCCTGCTCGA 20 20 50.0 50.0 58.2 58.1 2.0 0.0 0.257364 44606 45179 1487-1494 1.000000 86.6 petA-chlI_p5 petA-chlI 5 GCCGTGGACAAGTTTATCCA GAGCGAATTGTAGATGCCCA 20 20 50.0 50.0 58.2 58.0 2.0 0.0 0.230367 44606 45179 1269-1269 0.500000 58.2 trnI-CAU-trnS-GCU_p1 trnI-CAU-trnS-GCU 1 GACTCATAAGCCCAAGGTCG CTTTCGACCACTCAGCCATT 20 20 55.0 50.0 58.1 58.2 0.0 0.0 0.245162 49770 49794 95-95 1.000000 81.4 trnI-CAU-trnS-GCU_p2 trnI-CAU-trnS-GCU 2 GACTCATAAGCCCAAGGTCG TTCGACCACTCAGCCATTTC 20 20 55.0 50.0 58.1 58.2 0.0 0.0 0.250264 49770 49794 93-93 1.000000 81.4 trnI-CAU-trnS-GCU_p3 trnI-CAU-trnS-GCU 3 ATAAGCCCAAGGTCGTAGGT CTTTCGACCACTCAGCCATT 20 20 50.0 50.0 58.1 58.2 0.0 0.0 0.310999 49770 49794 90-90 1.000000 81.1 trnI-CAU-trnS-GCU_p4 trnI-CAU-trnS-GCU 4 ATAAGCCCAAGGTCGTAGGT TTCGACCACTCAGCCATTTC 20 20 50.0 50.0 58.1 58.2 0.0 0.0 0.316101 49770 49794 88-88 1.000000 81.1 trnI-CAU-trnS-GCU_p5 trnI-CAU-trnS-GCU 5 GACTCATAAGCCCAAGGTCG GACCACTCAGCCATTTCTCC 20 20 55.0 55.0 58.1 58.3 0.0 0.0 0.314679 49770 49794 90-90 1.000000 81.0 secG-trnfM-CAU_p1 secG-trnfM-CAU 1 TATGCCCCCATCGTCTAGAG TACCAGACTGCTCTACTCCG 20 20 55.0 55.0 58.1 58.0 0.0 0.0 0.115087 55590 55706 536-538 1.000000 87.6 secG-trnfM-CAU_p2 secG-trnfM-CAU 2 CAATCGCTACTGCAGATGGT TACCAGACTGCTCTACTCCG 20 20 50.0 55.0 58.1 58.0 23.3 0.0 0.094431 55590 55706 811-811 1.000000 86.6 secG-trnfM-CAU_p3 secG-trnfM-CAU 3 CAATCGCTACTGCAGATGGT CATTGGCCTTCGGGTTATGA 20 20 50.0 50.0 58.1 57.9 23.3 3.3 0.105947 55590 55706 842-842 1.000000 86.4 secG-trnfM-CAU_p4 secG-trnfM-CAU 4 CAATCGCTACTGCAGATGGT AATCGACCAACTCTGCCATC 20 20 50.0 50.0 58.1 58.0 23.3 0.0 0.084451 55590 55706 1425-1425 1.000000 84.1 secG-trnfM-CAU_p5 secG-trnfM-CAU 5 TATGCCCCCATCGTCTAGAG AATCGACCAACTCTGCCATC 20 20 55.0 50.0 58.1 58.0 0.0 0.0 0.105107 55590 55706 1150-1152 1.000000 83.8 psaJ-trnP-UGG_p1 psaJ-trnP-UGG 1 CGATTTTTCCCAGATATGTTAGGA GGTAGAGTACCTGCTTTGGG 24 20 37.5 55.0 56.6 57.3 0.0 0.0 6.124209 64964 65079 208-229 1.000000 44.8 psaJ-trnP-UGG_p2 psaJ-trnP-UGG 2 CGATTTTTCCCAGATATGTTAGG GGTAGAGTACCTGCTTTGGG 23 20 39.1 55.0 55.2 57.3 0.0 0.0 6.500849 64964 65079 208-229 1.000000 44.8 psaJ-trnP-UGG_p3 psaJ-trnP-UGG 3 TCGATTTTTCCCAGATATGTTAGGA GTAGAGTACCTGCTTTGGGAG 25 21 36.0 52.4 57.9 57.5 0.0 0.0 6.660504 64964 65079 208-229 1.000000 44.8 psaJ-trnP-UGG_p4 psaJ-trnP-UGG 4 TCGATTTTTCCCAGATATGTTAGGA GGTAGAGTACCTGCTTTGGG 25 20 36.0 55.0 57.9 57.3 0.0 0.0 5.825173 64964 65079 209-230 1.000000 44.7 psaJ-trnP-UGG_p5 psaJ-trnP-UGG 5 TCGATTTTTCCCAGATATGTTAGG GGTAGAGTACCTGCTTTGGG 24 20 37.5 55.0 56.6 57.3 0.0 0.0 6.124209 64964 65079 209-230 1.000000 44.7 trnP-UGG-ycf89_p1 trnP-UGG-ycf89 1 TTACGTGCGGTGAGTACAAG ATACATCGCGGCACAATTCT 20 20 50.0 45.0 57.9 58.0 0.0 6.1 0.101128 65154 65639 1438-1438 0.500000 59.2 trnP-UGG-ycf89_p2 trnP-UGG-ycf89 2 GTTGGATTGGATGGGTTGGT ATACATCGCGGCACAATTCT 20 20 50.0 45.0 58.1 58.0 0.0 6.1 0.109250 65154 65639 1467-1467 0.500000 59.1 trnP-UGG-ycf89_p3 trnP-UGG-ycf89 3 TGGTTGGATTGGATGGGTTG ATACATCGCGGCACAATTCT 20 20 50.0 45.0 58.1 58.0 0.0 6.1 0.110642 65154 65639 1469-1469 0.500000 59.1 trnP-UGG-ycf89_p4 trnP-UGG-ycf89 4 GCGGTGAGTACAAGTGCTAA ATACATCGCGGCACAATTCT 20 20 50.0 45.0 57.9 58.0 0.0 6.1 0.120988 65154 65639 1432-1432 0.500000 59.0 trnP-UGG-ycf89_p5 trnP-UGG-ycf89 5 TTACGTGCGGTGAGTACAAG GATCACGTGCCTCGAAATCT 20 20 50.0 50.0 57.9 58.1 0.0 11.7 0.126792 65154 65639 1159-1159 0.500000 59.0 ycf89-rns_p1 ycf89-rns 1 AGAATTGTGCCGCGATGTAT CATTGCGGAAAATTCCCCAC 20 20 45.0 50.0 58.0 58.0 8.2 6.6 0.055193 66606 67155 1434-1458 1.000000 86.5 ycf89-rns_p2 ycf89-rns 2 AGAATTGTGCCGCGATGTAT TATTGCTCCGTCAGGCTTTC 20 20 45.0 50.0 58.0 58.0 8.2 0.0 0.070617 66606 67155 1457-1481 1.000000 86.2 ycf89-rns_p3 ycf89-rns 3 AGAATTGTGCCGCGATGTAT CAACCCATAGGCAGTCTTCC 20 20 45.0 55.0 58.0 58.0 8.2 0.0 0.090564 66606 67155 1486-1510 1.000000 86.0 ycf89-rns_p4 ycf89-rns 4 AGAATTGTGCCGCGATGTAT ATTGCGGAAAATTCCCCACT 20 20 45.0 45.0 58.0 58.1 8.2 6.6 0.109250 66606 67155 1433-1457 1.000000 86.0 ycf89-rns_p5 ycf89-rns 5 AGAATTGTGCCGCGATGTAT CTTGCATCCTCCGTCTTACC 20 20 45.0 55.0 58.0 58.1 8.2 0.0 0.105116 66606 67155 1585-1609 1.000000 85.4 ycf46-ccs1_p1 ycf46-ccs1 1 AAAATTGGGCAGTCTCTGGG ACTTAAAGCGGCAATCATCA 20 20 50.0 40.0 58.1 55.7 0.0 1.4 2.343197 78958 78964 147-147 1.000000 61.8 ycf46-ccs1_p2 ycf46-ccs1 2 AAAATTGGGCAGTCTCTGGG ACTTAAAGCGGCAATCATCAA 20 21 50.0 38.1 58.1 56.5 0.0 1.4 2.563206 78958 78964 147-147 1.000000 60.0 ycf46-ccs1_p3 ycf46-ccs1 3 AAAATTGGGCAGTCTCTGGG ACTTAAAGCGGCAATCATCAAT 20 22 50.0 36.4 58.1 57.0 0.0 1.4 3.060411 78958 78964 147-147 1.000000 56.1 ycf46-ccs1_p4 ycf46-ccs1 4 GCGAATTCGTCTTGCTTCTT ACTTAAAGCGGCAATCATCA 20 20 45.0 40.0 57.1 55.7 27.2 1.4 3.154807 78958 78964 128-128 1.000000 55.4 ycf46-ccs1_p5 ycf46-ccs1 5 GGCGAATTCGTCTTGCTTCT ACTTAAAGCGGCAATCATCA 20 20 50.0 40.0 58.9 55.7 27.2 1.4 3.192562 78958 78964 129-129 1.000000 55.1 thiS-psb28_p1 thiS-psb28 1 TCACAACCCACTGCCTTAAC CTTTGACTCCGCCATTCGTA 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.028923 85038 85536 1299-1340 1.000000 88.2 thiS-psb28_p2 thiS-psb28 2 TCACAACCCACTGCCTTAAC TTTGACTCCGCCATTCGTAG 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.028923 85038 85536 1298-1339 1.000000 88.2 thiS-psb28_p3 thiS-psb28 3 TCACAACCCACTGCCTTAAC CCTGCCACCCCAGTTTTTAT 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.087149 85038 85536 1270-1311 1.000000 87.9 thiS-psb28_p4 thiS-psb28 4 GACCAGGCCTAGCAATCTTC CTTTGACTCCGCCATTCGTA 20 20 55.0 50.0 58.0 58.0 4.0 0.0 0.044166 85038 85536 1502-1502 0.500000 59.6 thiS-psb28_p5 thiS-psb28 5 GACCAGGCCTAGCAATCTTC TTTGACTCCGCCATTCGTAG 20 20 55.0 50.0 58.0 58.0 4.0 0.0 0.044166 85038 85536 1501-1501 0.500000 59.6 rps19-ycf88_p1 rps19-ycf88 1 TCACATATTAAAGCCGACAA ATGTGGAAACTTTTTGGAAAA 20 21 35.0 28.6 52.6 52.6 0.0 0.0 11.829509 92891 92903 95-96 1.000000 43.4 rps19-ycf88_p2 rps19-ycf88 2 TCACATATTAAAGCCGACAA TGTGGAAACTTTTTGGAAAAT 20 21 35.0 28.6 52.6 52.6 0.0 0.0 11.829509 92891 92903 94-95 1.000000 43.4 rps19-ycf88_p3 rps19-ycf88 3 TCACATATTAAAGCCGACAA AATGTGGAAACTTTTTGGAAA 20 21 35.0 28.6 52.6 52.6 0.0 0.0 11.829509 92891 92903 96-97 1.000000 43.3 rps19-ycf88_p4 rps19-ycf88 4 ACATTTAAATCACATATTAAAGCCGAC ATGTTAACTCTAATCGTGCCA 27 21 29.6 38.1 57.3 55.0 0.0 7.2 11.687850 92891 92903 80-80 0.500000 20.0 rps19-ycf88_p5 rps19-ycf88 5 ACATTTAAATCACATATTAAAGCCGA ATGTTAACTCTAATCGTGCCA 26 21 26.9 38.1 56.1 55.0 0.0 7.2 11.861645 92891 92903 80-80 0.500000 20.0 ccs1-ycf46_p1 ccs1-ycf46 1 ACTTAAAGCGGCAATCATCA AAAATTGGGCAGTCTCTGGG 20 20 40.0 50.0 55.7 58.1 1.4 0.0 2.343197 115272 115278 147-147 1.000000 61.8 ccs1-ycf46_p2 ccs1-ycf46 2 ACTTAAAGCGGCAATCATCAA AAAATTGGGCAGTCTCTGGG 21 20 38.1 50.0 56.5 58.1 1.4 0.0 2.563206 115272 115278 147-147 1.000000 60.0 ccs1-ycf46_p3 ccs1-ycf46 3 ACTTAAAGCGGCAATCATCAAT AAAATTGGGCAGTCTCTGGG 22 20 36.4 50.0 57.0 58.1 1.4 0.0 3.060411 115272 115278 147-147 1.000000 56.1 ccs1-ycf46_p4 ccs1-ycf46 4 ACTTAAAGCGGCAATCATCA GCGAATTCGTCTTGCTTCTT 20 20 40.0 45.0 55.7 57.1 1.4 27.2 3.154807 115272 115278 128-128 1.000000 55.4 ccs1-ycf46_p5 ccs1-ycf46 5 ACTTAAAGCGGCAATCATCA GGCGAATTCGTCTTGCTTCT 20 20 40.0 50.0 55.7 58.9 1.4 27.2 3.192562 115272 115278 129-129 1.000000 55.1 rns-ycf89_p1 rns-ycf89 1 CATTGCGGAAAATTCCCCAC AGAATTGTGCCGCGATGTAT 20 20 50.0 45.0 58.0 58.0 6.6 8.2 0.055193 127081 127630 1434-1458 1.000000 86.5 rns-ycf89_p2 rns-ycf89 2 TATTGCTCCGTCAGGCTTTC AGAATTGTGCCGCGATGTAT 20 20 50.0 45.0 58.0 58.0 0.0 8.2 0.070617 127081 127630 1457-1481 1.000000 86.2 rns-ycf89_p3 rns-ycf89 3 CAACCCATAGGCAGTCTTCC AGAATTGTGCCGCGATGTAT 20 20 55.0 45.0 58.0 58.0 0.0 8.2 0.090564 127081 127630 1486-1510 1.000000 86.0 rns-ycf89_p4 rns-ycf89 4 ATTGCGGAAAATTCCCCACT AGAATTGTGCCGCGATGTAT 20 20 45.0 45.0 58.1 58.0 6.6 8.2 0.109250 127081 127630 1433-1457 1.000000 86.0 rns-ycf89_p5 rns-ycf89 5 CTTGCATCCTCCGTCTTACC AGAATTGTGCCGCGATGTAT 20 20 55.0 45.0 58.1 58.0 0.0 8.2 0.105116 127081 127630 1585-1609 1.000000 85.4 ycf89-trnP-UGG_p1 ycf89-trnP-UGG 1 ATACATCGCGGCACAATTCT AGGATTTGAACCTACGGCAC 20 20 45.0 50.0 58.0 57.9 6.1 0.0 0.155866 128597 129082 974-974 0.500000 58.8 ycf89-trnP-UGG_p2 ycf89-trnP-UGG 2 GATCACGTGCCTCGAAATCT AGGATTTGAACCTACGGCAC 20 20 50.0 50.0 58.1 57.9 11.7 0.0 0.181530 128597 129082 695-695 0.500000 58.5 ycf89-trnP-UGG_p3 ycf89-trnP-UGG 3 AATTGATCACGTGCCTCGAA AGGATTTGAACCTACGGCAC 20 20 45.0 50.0 57.9 57.9 11.7 0.0 0.202731 128597 129082 699-699 0.500000 58.4 ycf89-trnP-UGG_p4 ycf89-trnP-UGG 4 ATTGATCACGTGCCTCGAAA AGGATTTGAACCTACGGCAC 20 20 45.0 50.0 57.9 57.9 11.7 0.0 0.202731 128597 129082 698-698 0.500000 58.4 ycf89-trnP-UGG_p5 ycf89-trnP-UGG 5 TTGATCACGTGCCTCGAAAT AGGATTTGAACCTACGGCAC 20 20 45.0 50.0 57.9 57.9 11.7 0.0 0.202731 128597 129082 697-697 0.500000 58.4