primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score ycf4_p1 ycf4 1 GGCTATATGGTCTTTCCCCC CGGGGTGGGAGTCAAAATTT 20 20 55.0 50.0 57.1 58.4 0.0 0.0 1.253247 2466 3020 719-719 1.000000 70.0 ycf4_p2 ycf4 2 GGCTATATGGTCTTTCCCCC ATGAGAATGACTTCGGGGTG 20 20 55.0 50.0 57.1 57.3 0.0 0.0 1.579965 2466 3020 732-732 1.000000 67.4 ycf4_p3 ycf4 3 CTGGCTATATGGTCTTTCCCC CGGGGTGGGAGTCAAAATTT 21 20 52.4 50.0 57.6 58.4 0.0 0.0 1.797298 2466 3020 721-721 1.000000 65.6 ycf4_p4 ycf4 4 GGCTATATGGTCTTTCCCCC GGGGTGGGAGTCAAAATTTG 20 20 55.0 50.0 57.1 56.9 0.0 0.0 2.009501 2466 3020 718-718 1.000000 63.9 ycf4_p5 ycf4 5 TGGCTATATGGTCTTTCCCC CGGGGTGGGAGTCAAAATTT 20 20 50.0 50.0 56.4 58.4 0.0 0.0 2.016134 2466 3020 720-720 1.000000 63.9 rpl22_p1 rpl22 1 TAGCTCGAAGGGTCTGTAGG TTCCAGGGACATGCGAAAAA 20 20 55.0 45.0 57.9 58.0 0.0 0.0 0.065939 15004 15384 1226-1226 1.000000 79.9 rpl22_p2 rpl22 2 TAGCTCGAAGGGTCTGTAGG TTTCCAGGGACATGCGAAAA 20 20 55.0 45.0 57.9 58.0 0.0 0.0 0.065939 15004 15384 1227-1227 1.000000 79.9 rpl22_p3 rpl22 3 TAGCTCGAAGGGTCTGTAGG TTTTCCAGGGACATGCGAAA 20 20 55.0 45.0 57.9 58.0 0.0 0.0 0.065939 15004 15384 1228-1228 1.000000 79.9 rpl22_p4 rpl22 4 TAGCTCGAAGGGTCTGTAGG TCAAAACGTTGGCTGGGTAA 20 20 55.0 45.0 57.9 57.9 0.0 0.0 0.108464 15004 15384 1718-1718 1.000000 79.5 rpl22_p5 rpl22 5 TAGCTCGAAGGGTCTGTAGG ATAGTAACCTGGTCCCGGAG 20 20 55.0 55.0 57.9 57.9 0.0 0.7 0.137860 15004 15384 1373-1373 1.000000 79.3 rpl22-rps19_p1 rpl22-rps19 1 ATGAGCTACTCTACGGGCTT TTCCAGGGACATGCGAAAAA 20 20 50.0 45.0 57.9 58.0 0.0 0.0 0.086435 15385 15463 220-220 0.500000 59.3 rpl22-rps19_p2 rpl22-rps19 2 ATGAGCTACTCTACGGGCTT TTTCCAGGGACATGCGAAAA 20 20 50.0 45.0 57.9 58.0 0.0 0.0 0.086435 15385 15463 221-221 0.500000 59.3 rpl22-rps19_p3 rpl22-rps19 3 ATGAGCTACTCTACGGGCTT TTTTCCAGGGACATGCGAAA 20 20 50.0 45.0 57.9 58.0 0.0 0.0 0.086435 15385 15463 222-222 0.500000 59.3 rpl22-rps19_p4 rpl22-rps19 4 ATGAGCTACTCTACGGGCTT TCAAAACGTTGGCTGGGTAA 20 20 50.0 45.0 57.9 57.9 0.0 0.0 0.128961 15385 15463 712-712 0.500000 59.0 rpl22-rps19_p5 rpl22-rps19 5 ATGAGCTACTCTACGGGCTT ATAGTAACCTGGTCCCGGAG 20 20 50.0 55.0 57.9 57.9 0.0 0.7 0.158357 15385 15463 367-367 0.500000 58.7 psbJ-accD_p1 psbJ-accD 1 GATAGGCCTTTTTGCGGGTA CATGGTTCCACGAGCTCTTT 20 20 50.0 50.0 58.0 58.2 12.6 12.8 0.233488 23567 25877 2469-2494 1.000000 78.3 psbJ-accD_p2 psbJ-accD 2 CCCTCTTTGGTTGATAGGCC CATGGTTCCACGAGCTCTTT 20 20 55.0 50.0 57.9 58.2 0.0 12.8 0.245080 23567 25877 2481-2506 1.000000 78.2 psbJ-accD_p3 psbJ-accD 3 ACGGGATTAGGGTCTTCCTT CATGGTTCCACGAGCTCTTT 20 20 50.0 50.0 57.7 58.2 0.0 12.8 0.452013 23567 25877 2405-2430 1.000000 76.6 psbJ-accD_p4 psbJ-accD 4 GGTTGATAGGCCTTTTTGCG CATGGTTCCACGAGCTCTTT 20 20 50.0 50.0 57.7 58.2 12.6 12.8 0.464513 23567 25877 2473-2498 1.000000 76.5 psbJ-accD_p5 psbJ-accD 5 GTTGATAGGCCTTTTTGCGG CATGGTTCCACGAGCTCTTT 20 20 50.0 50.0 57.7 58.2 12.6 12.8 0.464513 23567 25877 2472-2497 1.000000 76.5 accD-rbcL_p1 accD-rbcL 1 AAGGGTCTCACAATTCTCGC GGTAATCAAGTGATCCGCGA 20 20 50.0 50.0 57.9 57.8 0.0 8.2 0.319558 27981 28749 997-997 1.000000 77.5 accD-rbcL_p2 accD-rbcL 2 AAGGGTCTCACAATTCTCGC AGGTAATCAAGTGATCCGCG 20 20 50.0 50.0 57.9 57.8 0.0 0.0 0.325673 27981 28749 998-998 1.000000 77.5 accD-rbcL_p3 accD-rbcL 3 TTTCTACGGGGGTTGTTTCG GGTAATCAAGTGATCCGCGA 20 20 50.0 50.0 58.1 57.8 0.0 8.2 0.337362 27981 28749 935-935 1.000000 77.4 accD-rbcL_p4 accD-rbcL 4 TTTCTACGGGGGTTGTTTCG AGGTAATCAAGTGATCCGCG 20 20 50.0 50.0 58.1 57.8 0.0 0.0 0.343477 27981 28749 936-936 1.000000 77.3 accD-rbcL_p5 accD-rbcL 5 GGTCTCACAATTCTCGCACA GGTAATCAAGTGATCCGCGA 20 20 50.0 50.0 58.2 57.8 0.0 8.2 0.423185 27981 28749 994-994 1.000000 76.7 ndhJ-chlN_p1 ndhJ-chlN 1 GTTGGATTGGGTGGCCTTTA GACTTGGGTCCAACCACTTT 20 20 50.0 50.0 58.1 57.9 3.3 0.0 0.135730 36648 37175 632-632 1.000000 79.0 ndhJ-chlN_p2 ndhJ-chlN 2 TTGGATTGGGTGGCCTTTAC GACTTGGGTCCAACCACTTT 20 20 50.0 50.0 58.1 57.9 3.3 0.0 0.135730 36648 37175 631-631 1.000000 79.0 ndhJ-chlN_p3 ndhJ-chlN 3 GTTGGATTGGGTGGCCTTTA CCTCTACGGCGTCAGAAAAA 20 20 50.0 50.0 58.1 57.9 3.3 19.2 0.142912 36648 37175 659-659 1.000000 79.0 ndhJ-chlN_p4 ndhJ-chlN 4 TTGGATTGGGTGGCCTTTAC CCTCTACGGCGTCAGAAAAA 20 20 50.0 50.0 58.1 57.9 3.3 19.2 0.142912 36648 37175 658-658 1.000000 79.0 ndhJ-chlN_p5 ndhJ-chlN 5 TTGGATTGGGTGGCCTTTAC ACTTGGGTCCAACCACTTTG 20 20 50.0 50.0 58.1 58.2 3.3 0.0 0.292980 36648 37175 630-630 1.000000 77.8 atpI-atpH_p1 atpI-atpH 1 CGAATCCATGGAGGGTCATC CCTACGGATAATCCAGCAGC 20 20 55.0 55.0 57.8 57.9 21.3 0.0 0.261932 78315 78891 655-655 1.000000 78.0 atpI-atpH_p2 atpI-atpH 2 CGAATCCATGGAGGGTCATC GCCTACGGATAATCCAGCAG 20 20 55.0 55.0 57.8 57.9 21.3 0.0 0.261932 78315 78891 656-656 1.000000 78.0 atpI-atpH_p3 atpI-atpH 3 CGAATCCATGGAGGGTCATC AACGGAAGCAGCAGAAATCA 20 20 55.0 45.0 57.8 58.1 21.3 0.0 0.279658 78315 78891 632-632 1.000000 77.9 atpI-atpH_p4 atpI-atpH 4 CGAATCCATGGAGGGTCATC ACGGAAGCAGCAGAAATCAA 20 20 55.0 45.0 57.8 58.1 21.3 0.0 0.279658 78315 78891 631-631 1.000000 77.9 atpI-atpH_p5 atpI-atpH 5 CGAATCCATGGAGGGTCATC GCCAGGTCCAATAGAAGCAA 20 20 55.0 50.0 57.8 57.9 21.3 0.0 0.304648 78315 78891 677-677 1.000000 77.7 atpF_p1 atpF 1 CGGGACCTGGGACTTACTAA ACTGATTTCATCGGGTCGAA 20 20 55.0 45.0 58.1 56.9 0.0 0.0 1.194280 79457 80700 1444-1444 1.000000 70.5 atpF_p2 atpF 2 CGGGACCTGGGACTTACTAA ACTACTGATTTCATCGGGTCG 20 21 55.0 47.6 58.1 57.6 0.0 0.0 1.581668 79457 80700 1447-1447 1.000000 67.4 atpF_p3 atpF 3 CGGGACCTGGGACTTACTAA ACTGATTTCATCGGGTCGAAT 20 21 55.0 42.9 58.1 57.5 0.0 0.0 1.687051 79457 80700 1444-1444 1.000000 66.6 atpF_p4 atpF 4 CGGGACCTGGGACTTACTAA CTACTGATTTCATCGGGTCGA 20 21 55.0 47.6 58.1 57.3 0.0 0.0 1.853697 79457 80700 1446-1446 1.000000 65.2 atpF_p5 atpF 5 CGGGACCTGGGACTTACTAA CATCGGGTCGAATAGTTACCA 20 21 55.0 47.6 58.1 57.3 0.0 0.0 1.864321 79457 80700 1436-1436 1.000000 65.1 CrjaCt019-psaM_p1 CrjaCt019-psaM 1 ACGAGAGTTGAAAGATCCTTCA AGCAGCTAAAAGGGCTATCA 22 20 40.9 45.0 57.1 56.6 2.5 0.0 4.278200 83433 83969 658-658 1.000000 45.8 CrjaCt019-psaM_p2 CrjaCt019-psaM 2 ACGAGAGTTGAAAGATCCTTCA AAGCAGCTAAAAGGGCTATCA 22 21 40.9 42.9 57.1 57.3 2.5 0.0 4.525803 83433 83969 659-659 1.000000 43.8 CrjaCt019-psaM_p3 CrjaCt019-psaM 3 ACGAGAGTTGAAAGATCCTTCA AGCAGCTAAAAGGGCTATCAA 22 21 40.9 42.9 57.1 57.3 2.5 0.0 4.525803 83433 83969 658-658 1.000000 43.8 CrjaCt019-psaM_p4 CrjaCt019-psaM 4 ACGAGAGTTGAAAGATCCTTCAA AGCAGCTAAAAGGGCTATCA 23 20 39.1 45.0 57.8 56.6 14.2 0.0 4.619706 83433 83969 658-658 1.000000 43.0 CrjaCt019-psaM_p5 CrjaCt019-psaM 5 ACGAGAGTTGAAAGATCCTTCAA AGCAGCTAAAAGGGCTATCAA 23 21 39.1 42.9 57.8 57.3 14.2 0.0 4.867309 83433 83969 658-658 1.000000 41.1 CrjaCt020-psbI_p1 CrjaCt020-psbI 1 TCTAGGAGAGATGGCTGAGC CGAAATCCTGGGCGTAAAGA 20 20 55.0 50.0 58.0 58.0 0.0 0.0 0.024586 84318 84400 196-196 1.000000 80.6 CrjaCt020-psbI_p2 CrjaCt020-psbI 2 GGGTTCGAATCCCTCTCTCT CGAAATCCTGGGCGTAAAGA 20 20 55.0 50.0 58.2 58.0 17.2 0.0 0.235471 84318 84400 127-127 1.000000 79.4 CrjaCt020-psbI_p3 CrjaCt020-psbI 3 GACTAAAGCGGTGGATTGCT CGAAATCCTGGGCGTAAAGA 20 20 50.0 50.0 58.3 58.0 0.0 0.0 0.279475 84318 84400 175-175 1.000000 78.7 CrjaCt020-psbI_p4 CrjaCt020-psbI 4 TCTAGGAGAGATGGCTGAGC ACGAAATCCTGGGCGTAAAG 20 20 55.0 50.0 58.0 58.3 0.0 0.0 0.271881 84318 84400 197-197 1.000000 78.6 CrjaCt020-psbI_p5 CrjaCt020-psbI 5 TCTAGGAGAGATGGCTGAGC GACGAAATCCTGGGCGTAAA 20 20 55.0 50.0 58.0 58.3 0.0 0.0 0.276760 84318 84400 198-198 1.000000 78.6 ndhA_p1 ndhA 1 GCAACCCTCTTCACGAAGAA TTGCAGATCCCTCCTCAACT 20 20 50.0 50.0 58.1 58.3 10.5 0.0 0.459584 91267 93131 1998-1999 1.000000 76.4 ndhA_p2 ndhA 2 GCAACCCTCTTCACGAAGAA AGATCCCTCCTCAACTGGTT 20 20 50.0 50.0 58.1 57.6 10.5 0.0 0.471909 91267 93131 1994-1995 1.000000 76.3 ndhA_p3 ndhA 3 GCAACCCTCTTCACGAAGAA CAGATCCCTCCTCAACTGGT 20 20 50.0 55.0 58.1 58.4 10.5 0.0 0.543311 91267 93131 1995-1996 1.000000 75.7 ndhA_p4 ndhA 4 ATTGCAACCCTCTTCACGAA TTGCAGATCCCTCCTCAACT 20 20 45.0 50.0 57.7 58.3 0.0 0.0 0.608889 91267 93131 2001-2002 1.000000 75.2 ndhA_p5 ndhA 5 GCAACCCTCTTCACGAAGAA TTTGCAGATCCCTCCTCAAC 20 20 50.0 50.0 58.1 57.5 10.5 0.0 0.617945 91267 93131 1999-2000 1.000000 75.1 ndhF_p1 ndhF 1 GGATCTAGTGGATTGGAAACCA CCAGGGAACGATATTGAAAAAGG 22 23 45.5 43.5 57.5 57.8 0.0 0.0 5.752584 96166 98391 2378-2378 1.000000 40.0 ndhF_p2 ndhF 2 AGGATCTAGTGGATTGGAAACC CCAGGGAACGATATTGAAAAAGG 22 23 45.5 43.5 57.2 57.8 0.0 0.0 6.028863 96166 98391 2379-2379 1.000000 40.0 ndhF_p3 ndhF 3 TGGAAACCAAGAATGTGGAA CCAGGGAACGATATTGAAAAAGG 20 23 40.0 43.5 55.0 57.8 0.0 0.0 6.199201 96166 98391 2365-2365 1.000000 40.0 ndhF_p4 ndhF 4 TTGGAAACCAAGAATGTGGA CCAGGGAACGATATTGAAAAAGG 20 23 40.0 43.5 55.0 57.8 0.0 0.0 6.199201 96166 98391 2366-2366 1.000000 40.0 ndhF_p5 ndhF 5 TGTTCTCTTCAGGATCTAGTGGA CCAGGGAACGATATTGAAAAAGG 23 23 43.5 43.5 58.1 57.8 0.0 0.0 6.313292 96166 98391 2389-2389 1.000000 40.0 ndhF-CrjaCt024_p1 ndhF-CrjaCt024 1 ATGAGATGCTTAGGAGGGGG TTCCTCAGTAGCTCAGTGGT 20 20 55.0 50.0 58.3 57.7 0.0 0.0 0.571029 98392 99193 983-983 1.000000 75.7 ndhF-CrjaCt024_p2 ndhF-CrjaCt024 2 GCTTAGGAGGGGGACGTATA TTCCTCAGTAGCTCAGTGGT 20 20 55.0 50.0 57.7 57.7 0.0 0.0 0.610105 98392 99193 976-976 1.000000 75.4 ndhF-CrjaCt024_p3 ndhF-CrjaCt024 3 ATGAGATGCTTAGGAGGGGG CCGATTGGTCGTAGGTTCAA 20 20 55.0 50.0 58.3 57.6 0.0 0.0 0.633790 98392 99193 945-945 1.000000 75.2 ndhF-CrjaCt024_p4 ndhF-CrjaCt024 4 GCTTAGGAGGGGGACGTATA CCGATTGGTCGTAGGTTCAA 20 20 55.0 50.0 57.7 57.6 0.0 0.0 0.672866 98392 99193 938-938 1.000000 74.9 ndhF-CrjaCt024_p5 ndhF-CrjaCt024 5 AGGAGAGGGAATGAGATGCT TTCCTCAGTAGCTCAGTGGT 20 20 50.0 50.0 57.5 57.7 0.0 0.0 0.803878 98392 99193 993-993 1.000000 73.8 CrjaCt026_p1 CrjaCt026 1 TTCTGATTGATCTGCTCCGC TGATTTACTTCACGGGCGAG 20 20 50.0 50.0 58.1 58.0 0.0 0.0 0.059195 103721 104565 979-979 1.000000 79.6 CrjaCt026_p2 CrjaCt026 2 TTCTGATTGATCTGCTCCGC CCACCCATTATGCGCTATGT 20 20 50.0 50.0 58.1 58.1 0.0 9.7 0.158393 103721 104565 934-934 1.000000 78.8 CrjaCt026_p3 CrjaCt026 3 TTCTGATTGATCTGCTCCGC GGATAGCCCACCCATTATGC 20 20 50.0 55.0 58.1 58.2 0.0 0.0 0.215189 103721 104565 941-941 1.000000 78.4 CrjaCt026_p4 CrjaCt026 4 TTCTGATTGATCTGCTCCGC CTGGTTCAAGCCCAGGATAG 20 20 50.0 55.0 58.1 57.7 0.0 0.0 0.393189 103721 104565 955-955 1.000000 76.9 CrjaCt026_p5 CrjaCt026 5 TTCTGATTGATCTGCTCCGC GATAGCCCACCCATTATGCG 20 20 50.0 55.0 58.1 58.5 0.0 0.0 0.601458 103721 104565 940-940 1.000000 75.3 CrjaCt030-ycf1_p1 CrjaCt030-ycf1 1 GAATGTCGCGTGTCTACCAT TCCAAGGCAACAGAAAAGCT 20 20 50.0 45.0 58.1 57.9 5.8 0.0 0.149207 121185 122438 1203-1313 1.000000 83.3 CrjaCt030-ycf1_p2 CrjaCt030-ycf1 2 GAATGTCGCGTGTCTACCAT GGGACCAATTGGCAATGTTG 20 20 50.0 50.0 58.1 57.9 5.8 24.8 0.175109 121185 122438 1274-1384 1.000000 83.0 CrjaCt030-ycf1_p3 CrjaCt030-ycf1 3 GAATGTCGCGTGTCTACCAT GCTCCTTTGTATCCAAGGCA 20 20 50.0 50.0 58.1 57.9 5.8 0.0 0.206200 121185 122438 1214-1324 1.000000 82.8 CrjaCt030-ycf1_p4 CrjaCt030-ycf1 4 GAATGTCGCGTGTCTACCAT TGCTCCTTTGTATCCAAGGC 20 20 50.0 50.0 58.1 57.9 5.8 0.0 0.206200 121185 122438 1215-1325 1.000000 82.8 CrjaCt030-ycf1_p5 CrjaCt030-ycf1 5 GCGTGTCTACCATTTCACCA TCCAAGGCAACAGAAAAGCT 20 20 50.0 45.0 58.2 57.9 0.0 0.0 0.268443 121185 122438 1196-1306 1.000000 82.3