feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 4 76 -1 73 LSC 0.000000 0 0 71 2 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_001 igs trnH|psbA trnH-psbA 77 397 0 321 LSC 0.038095 12 6 144 300 yes 1.000000 2 1.000000 NA 0.981308 72.400000 psbA gene psbA psbA 398 1459 -1 1062 LSC 0.000000 0 0 37 178 no 0.000000 1 0.000000 NA 1.000000 27.800000 IGS_002 igs psbA|trnK psbA-trnK 1460 1727 0 268 LSC 0.014981 4 1 300 63 no 1.000000 2 1.000000 NA 0.996269 51.200000 trnK_part2 tRNA trnK trnK 1728 1762 -1 35 LSC 0.000000 0 0 44 28 no 0.000000 1 0.000000 NA 1.000000 20.900000 matK gene matK matK 2065 3645 -1 1581 LSC 0.016445 26 0 68 98 no 1.000000 2 1.000000 NA 1.000000 58.100000 IGS_005 igs matK|trnK matK-trnK 3646 4319 0 674 LSC 0.013413 9 3 11 105 no 1.000000 2 1.000000 NA 0.995549 52.700000 trnK_part1 tRNA trnK trnK 4320 4356 -1 37 LSC 0.000000 0 0 39 68 no 0.000000 1 0.000000 NA 1.000000 21.700000 IGS_006 igs trnK|rps16 trnK-rps16 4357 5105 0 749 LSC 0.022039 16 23 76 90 no 1.000000 2 1.000000 NA 0.969292 65.000000 rps16 gene rps16 rps16 5106 6255 -1 1150 LSC 0.013078 15 3 17 118 no 1.000000 2 1.000000 NA 0.997391 52.800000 IGS_007 igs rps16|trnQ rps16-trnQ 6256 6694 0 439 LSC 0.034169 15 0 207 141 yes 1.000000 2 1.000000 NA 1.000000 70.600000 trnQ tRNA trnQ trnQ 6695 6766 -1 72 LSC 0.000000 0 0 50 69 no 0.000000 1 0.000000 NA 1.000000 22.500000 IGS_008 igs trnQ|psbK trnQ-psbK 6767 7116 0 350 LSC 0.017143 6 0 122 205 no 1.000000 2 1.000000 NA 1.000000 57.500000 psbK gene psbK psbK 7117 7302 1 186 LSC 0.000000 0 0 10 19 no 0.000000 1 0.000000 NA 1.000000 19.500000 IGS_009 igs psbK|psbI psbK-psbI 7303 7716 0 414 LSC 0.019324 8 0 196 115 no 1.000000 2 1.000000 NA 1.000000 59.600000 psbI gene psbI psbI 7717 7827 1 111 LSC 0.000000 0 0 86 4 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_010 igs psbI|trnS psbI-trnS 7828 7918 0 91 LSC 0.043956 4 0 197 64 yes 1.000000 2 1.000000 NA 1.000000 67.600000 trnS tRNA trnS trnS 7919 8006 1 88 LSC 0.011364 1 0 33 41 no 1.000000 2 1.000000 NA 1.000000 46.500000 IGS_011 igs trnS|trnG trnS-trnG 8007 8654 0 648 LSC 0.023734 15 16 23 152 yes 1.000000 2 1.000000 NA 0.975309 61.400000 trnG_part1 tRNA trnG trnG 8655 8677 1 23 LSC 0.000000 0 0 85 129 no 0.000000 1 0.000000 NA 1.000000 25.100000 trnG_part2 tRNA trnG trnG 9396 9444 1 49 LSC 0.000000 0 0 99 15 no 0.000000 1 0.000000 NA 1.000000 19.900000 IGS_014 igs trnG|trnR trnG-trnR 9445 9628 0 184 LSC 0.011173 2 5 148 83 no 1.000000 2 1.000000 NA 0.972826 52.700000 trnR tRNA trnR trnR 9629 9700 1 72 LSC 0.000000 0 0 29 11 no 0.000000 1 0.000000 NA 1.000000 19.600000 IGS_015 igs trnR|atpA trnR-atpA 9701 9995 0 295 LSC 0.050847 15 0 101 99 yes 1.000000 2 1.000000 NA 1.000000 73.800000 atpA gene atpA atpA 9996 11519 -1 1524 LSC 0.005906 9 0 27 202 no 1.000000 2 1.000000 NA 1.000000 49.100000 IGS_016 igs atpA|atpF atpA-atpF 11520 11586 0 67 LSC 0.000000 0 2 64 135 no 1.000000 2 1.000000 NA 0.970149 45.200000 atpF gene atpF atpF 11587 12867 -1 1281 LSC 0.004699 6 4 131 75 no 1.000000 2 1.000000 NA 0.996877 52.400000 IGS_017 igs atpF|atpH atpF-atpH 12868 13329 0 462 LSC 0.023810 11 0 242 300 yes 1.000000 2 1.000000 NA 1.000000 69.600000 atpH gene atpH atpH 13330 13575 -1 246 LSC 0.000000 0 0 12 69 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_018 igs atpH|atpI atpH-atpI 13576 14068 0 493 LSC 0.032854 16 6 258 96 yes 1.000000 2 1.000000 NA 0.987830 68.700000 atpI gene atpI atpI 14069 14818 -1 750 LSC 0.005333 4 0 47 108 no 1.000000 2 1.000000 NA 1.000000 50.300000 IGS_019 igs atpI|rps2 atpI-rps2 14819 15059 0 241 LSC 0.004149 1 0 300 4 no 1.000000 2 1.000000 NA 1.000000 40.200000 rps2 gene rps2 rps2 15060 15770 -1 711 LSC 0.007032 5 0 132 37 no 1.000000 2 1.000000 NA 1.000000 50.600000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 15771 15989 0 219 LSC 0.018349 4 1 98 11 no 1.000000 2 1.000000 NA 0.995434 49.300000 rpoC2 gene rpoC2 rpoC2 15990 20129 -1 4140 LSC 0.008456 35 1 15 170 no 1.000000 2 1.000000 NA 0.999758 44.900000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 20130 20311 0 182 LSC 0.005495 1 0 38 300 no 1.000000 2 1.000000 NA 1.000000 43.500000 rpoC1 gene rpoC1 rpoC1 20312 23142 -1 2831 LSC 0.004950 14 3 11 56 no 1.000000 2 1.000000 NA 0.998940 44.800000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 23143 23168 0 26 LSC 0.000000 0 0 300 30 no 0.000000 1 0.000000 NA 1.000000 21.000000 rpoB gene rpoB rpoB 23169 26387 -1 3219 LSC 0.003107 10 0 300 48 no 1.000000 2 1.000000 NA 1.000000 45.700000 IGS_023 igs rpoB|trnC rpoB-trnC 26388 27482 0 1095 LSC 0.023941 26 9 106 151 yes 1.000000 2 1.000000 NA 0.991781 66.200000 trnC tRNA trnC trnC 27483 27553 1 71 LSC 0.000000 0 0 20 80 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_024 igs trnC|ycf6 trnC-ycf6 27554 28174 0 621 LSC 0.016103 10 0 91 151 no 1.000000 2 1.000000 NA 1.000000 59.800000 ycf6 gene ycf6 ycf6 28175 28264 1 90 LSC 0.000000 0 0 176 61 no 0.000000 1 0.000000 NA 1.000000 23.300000 IGS_025 igs ycf6|psbM ycf6-psbM 28265 28804 0 540 LSC 0.018797 10 8 266 121 no 1.000000 2 1.000000 NA 0.985185 63.800000 psbM gene psbM psbM 28805 28909 -1 105 LSC 0.000000 0 0 39 16 no 0.000000 1 0.000000 NA 1.000000 20.000000 IGS_026 igs psbM|trnD psbM-trnD 28910 29939 0 1030 LSC 0.014591 15 2 144 300 no 1.000000 2 1.000000 NA 0.998058 63.100000 trnD tRNA trnD trnD 29940 30013 -1 74 LSC 0.000000 0 0 11 300 no 0.000000 1 0.000000 NA 1.000000 19.600000 IGS_027 igs trnD|trnY trnD-trnY 30014 30436 0 423 LSC 0.002375 1 2 85 300 no 1.000000 2 1.000000 NA 0.995272 48.300000 trnY tRNA trnY trnY 30437 30520 -1 84 LSC 0.000000 0 0 103 254 no 0.000000 1 0.000000 NA 1.000000 26.500000 IGS_028 igs trnY|trnE trnY-trnE 30521 30579 0 59 LSC 0.000000 0 0 187 195 no 0.000000 1 0.000000 NA 1.000000 32.800000 trnE tRNA trnE trnE 30580 30652 -1 73 LSC 0.000000 0 0 246 122 no 0.000000 1 0.000000 NA 1.000000 27.900000 IGS_029 igs trnE|trnT trnE-trnT 30653 31473 0 821 LSC 0.023399 19 9 300 109 yes 1.000000 2 1.000000 NA 0.989038 66.400000 trnT tRNA trnT trnT 31474 31545 1 72 LSC 0.000000 0 0 56 37 no 0.000000 1 0.000000 NA 1.000000 21.500000 IGS_030 igs trnT|psbD trnT-psbD 31546 32772 0 1227 LSC 0.014718 18 4 128 113 no 1.000000 2 1.000000 NA 0.996740 61.000000 psbD gene psbD psbD 32773 33834 1 1062 LSC 0.001883 2 0 161 300 no 1.000000 2 1.000000 NA 1.000000 56.900000 psbC gene psbC psbC 33818 35203 1 1386 LSC 0.002165 3 0 300 28 no 1.000000 2 1.000000 NA 1.000000 47.100000 IGS_032 igs psbC|trnS psbC-trnS 35204 35384 0 181 LSC 0.044444 8 1 117 100 yes 1.000000 2 1.000000 NA 0.994475 71.100000 trnS tRNA trnS trnS 35385 35477 1 93 LSC 0.000000 0 0 23 7 no 0.000000 1 0.000000 NA 1.000000 19.300000 IGS_033 igs trnS|ycf9 trnS-ycf9 35478 35824 0 347 LSC 0.011527 4 0 116 59 no 1.000000 2 1.000000 NA 1.000000 49.500000 ycf9 gene ycf9 ycf9 35825 36013 1 189 LSC 0.005291 1 0 29 113 no 1.000000 2 1.000000 NA 1.000000 42.700000 IGS_034 igs ycf9|trnG ycf9-trnG 36014 36500 0 487 LSC 0.016632 8 6 129 118 no 1.000000 2 1.000000 NA 0.987680 61.000000 IGS_035 igs trnG|trnfM trnG-trnfM 36572 36713 0 142 LSC 0.014085 2 0 86 209 no 1.000000 2 1.000000 NA 1.000000 52.000000 trnfM tRNA trnfM trnfM 36714 36787 -1 74 LSC 0.000000 0 0 26 135 no 0.000000 1 0.000000 NA 1.000000 20.700000 IGS_036 igs trnfM|rps14 trnfM-rps14 36788 36947 0 160 LSC 0.006250 1 0 100 300 no 1.000000 2 1.000000 NA 1.000000 48.600000 rps14 gene rps14 rps14 36948 37250 -1 303 LSC 0.000000 0 0 24 92 no 0.000000 1 0.000000 NA 1.000000 20.600000 IGS_037 igs rps14|psaB rps14-psaB 37251 37381 0 131 LSC 0.008475 1 13 300 183 no 1.000000 2 1.000000 NA 0.900763 59.500000 psaB gene psaB psaB 37382 39586 -1 2205 LSC 0.003175 7 0 38 300 no 1.000000 2 1.000000 NA 1.000000 47.000000 IGS_038 igs psaB|psaA psaB-psaA 39587 39611 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psaA gene psaA psaA 39612 41864 -1 2253 LSC 0.001775 4 0 300 286 no 1.000000 2 1.000000 NA 1.000000 58.200000 IGS_039 igs psaA|ycf3 psaA-ycf3 41865 42588 0 724 LSC 0.005533 4 1 300 257 no 1.000000 2 1.000000 NA 0.998619 62.100000 ycf3 gene ycf3 ycf3 42589 43770 -1 1182 LSC 0.003416 4 11 245 112 no 1.000000 2 1.000000 NA 0.990694 55.000000 IGS_040 igs ycf3|trnS ycf3-trnS 43771 44848 0 1078 LSC 0.007421 8 0 300 3 no 1.000000 2 1.000000 NA 1.000000 48.200000 trnS tRNA trnS trnS 44849 44935 1 87 LSC 0.011494 1 0 179 30 no 1.000000 2 1.000000 NA 1.000000 46.400000 IGS_041 igs trnS|rps4 trnS-rps4 44936 45217 0 282 LSC 0.007092 2 0 83 248 no 1.000000 2 1.000000 NA 1.000000 47.800000 rps4 gene rps4 rps4 45218 45823 -1 606 LSC 0.001650 1 0 100 116 no 1.000000 2 1.000000 NA 1.000000 52.200000 IGS_042 igs rps4|trnT rps4-trnT 45824 46216 0 393 LSC 0.017949 7 3 300 119 no 1.000000 2 1.000000 NA 0.992366 59.400000 trnT tRNA trnT trnT 46217 46289 -1 73 LSC 0.000000 0 0 47 46 no 0.000000 1 0.000000 NA 1.000000 22.200000 IGS_043 igs trnT|trnL trnT-trnL 46290 47104 0 815 LSC 0.023342 19 1 120 225 yes 1.000000 2 1.000000 NA 0.998773 66.300000 trnL_part1 tRNA trnL trnL 47105 47139 1 35 LSC 0.000000 0 0 6 190 no 0.000000 1 0.000000 NA 1.000000 19.200000 trnL_part2 tRNA trnL trnL 47462 47511 1 50 LSC 0.000000 0 0 86 173 no 0.000000 1 0.000000 NA 1.000000 25.200000 IGS_046 igs trnL|trnF trnL-trnF 47512 47859 0 348 LSC 0.011561 4 2 136 212 no 1.000000 2 1.000000 NA 0.994253 55.900000 trnF tRNA trnF trnF 47860 47932 1 73 LSC 0.000000 0 0 121 139 no 0.000000 1 0.000000 NA 1.000000 27.800000 IGS_047 igs trnF|ndhJ trnF-ndhJ 47933 48512 0 580 LSC 0.015517 9 0 194 156 no 1.000000 2 1.000000 NA 1.000000 64.000000 ndhJ gene ndhJ ndhJ 48513 48989 -1 477 LSC 0.002096 1 0 11 20 no 1.000000 2 1.000000 NA 1.000000 43.200000 IGS_048 igs ndhJ|psbG ndhJ-psbG 48990 49092 0 103 LSC 0.039216 4 1 300 83 yes 1.000000 2 1.000000 NA 0.990291 67.200000 psbG gene psbG psbG 49093 49770 -1 678 LSC 0.001475 1 0 17 32 no 1.000000 2 1.000000 NA 1.000000 45.900000 IGS_049 igs psbG|ndhC psbG-ndhC 49771 49833 0 63 LSC 0.015873 1 0 300 287 no 1.000000 2 1.000000 NA 1.000000 61.600000 ndhC gene ndhC ndhC 49834 50196 -1 363 LSC 0.002755 1 0 30 45 no 1.000000 2 1.000000 NA 1.000000 42.600000 IGS_050 igs ndhC|trnV ndhC-trnV 50197 51062 0 866 LSC 0.023641 20 20 75 183 no 1.000000 2 1.000000 NA 0.976905 65.100000 trnV_part2 tRNA trnV trnV 51063 51097 -1 35 LSC 0.000000 0 0 30 148 no 0.000000 1 0.000000 NA 1.000000 21.000000 trnV_part1 tRNA trnV trnV 51709 51747 -1 39 LSC 0.000000 0 0 26 155 no 0.000000 1 0.000000 NA 1.000000 20.700000 IGS_053 igs trnV|trnM trnV-trnM 51748 51931 0 184 LSC 0.005435 1 0 65 157 no 1.000000 2 1.000000 NA 1.000000 45.500000 trnM tRNA trnM trnM 51932 52004 1 73 LSC 0.000000 0 0 28 84 no 0.000000 1 0.000000 NA 1.000000 20.900000 IGS_054 igs trnM|atpE trnM-atpE 52005 52143 0 139 LSC 0.007194 1 0 101 75 no 1.000000 2 1.000000 NA 1.000000 47.300000 atpE gene atpE atpE 52144 52542 -1 399 LSC 0.005013 2 0 54 300 no 1.000000 2 1.000000 NA 1.000000 46.500000 atpB gene atpB atpB 52539 54035 -1 1497 LSC 0.001336 2 0 181 205 no 1.000000 2 1.000000 NA 1.000000 58.100000 IGS_056 igs atpB|rbcL atpB-rbcL 54036 54846 0 811 LSC 0.009950 8 7 105 107 no 1.000000 2 1.000000 NA 0.991369 58.200000 rbcL gene rbcL rbcL 54847 56286 1 1440 LSC 0.004861 7 0 28 291 no 1.000000 2 1.000000 NA 1.000000 48.600000 IGS_057 igs rbcL|accD rbcL-accD 56287 56975 0 689 LSC 0.013274 9 11 38 254 no 1.000000 2 1.000000 NA 0.984035 55.800000 accD gene accD accD 56976 58430 1 1455 LSC 0.006873 10 0 69 8 no 1.000000 2 1.000000 NA 1.000000 48.300000 IGS_058 igs accD|psaI accD-psaI 58431 59110 0 680 LSC 0.013255 9 1 6 104 no 1.000000 2 1.000000 NA 0.998529 52.000000 psaI gene psaI psaI 59111 59224 1 114 LSC 0.008772 1 0 300 17 no 1.000000 2 1.000000 NA 1.000000 43.800000 IGS_059 igs psaI|ycf4 psaI-ycf4 59225 59637 0 413 LSC 0.012107 5 0 9 83 no 1.000000 2 1.000000 NA 1.000000 47.500000 ycf4 gene ycf4 ycf4 59638 60192 1 555 LSC 0.009009 5 0 118 60 no 1.000000 2 1.000000 NA 1.000000 52.500000 IGS_060 igs ycf4|ycf10/cemA ycf4-ycf10/cemA 60193 60653 0 461 LSC 0.019565 9 1 149 237 no 1.000000 2 1.000000 NA 0.997831 63.500000 ycf10/cemA gene ycf10/cemA ycf10/cemA 60654 61343 1 690 LSC 0.002899 2 0 79 121 no 1.000000 2 1.000000 NA 1.000000 51.300000 IGS_061 igs ycf10/cemA|petA ycf10/cemA-petA 61344 61567 0 224 LSC 0.013453 3 1 300 110 no 1.000000 2 1.000000 NA 0.995536 53.900000 petA gene petA petA 61568 62530 1 963 LSC 0.003115 3 0 100 48 no 1.000000 2 1.000000 NA 1.000000 49.100000 IGS_062 igs petA|psbJ petA-psbJ 62531 63521 0 991 LSC 0.019192 19 1 300 64 no 1.000000 2 1.000000 NA 0.998991 59.700000 psbJ gene psbJ psbJ 63522 63644 -1 123 LSC 0.008130 1 0 120 300 no 1.000000 2 1.000000 NA 1.000000 51.200000 IGS_063 igs psbJ|psbL psbJ-psbL 63645 63787 0 143 LSC 0.000000 0 0 58 300 no 0.000000 1 0.000000 NA 1.000000 23.100000 psbL gene psbL psbL 63788 63904 -1 117 LSC 0.000000 0 0 201 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_064 igs psbL|psbF psbL-psbF 63905 63925 0 21 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbF gene psbF psbF 63926 64045 -1 120 LSC 0.000000 0 0 300 207 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_065 igs psbF|psbE psbF-psbE 64046 64054 0 9 LSC 0.000000 0 0 300 198 no 0.000000 1 0.000000 NA 1.000000 33.600000 psbE gene psbE psbE 64055 64306 -1 252 LSC 0.003968 1 0 300 74 no 1.000000 2 1.000000 NA 1.000000 45.300000 IGS_066 igs psbE|ORF31 psbE-ORF31 64307 65243 0 937 LSC 0.016043 15 2 53 300 no 1.000000 2 1.000000 NA 0.997866 57.200000 ORF31 gene ORF31 ORF31 65244 65339 1 96 LSC 0.000000 0 0 110 259 no 0.000000 1 0.000000 NA 1.000000 27.000000 IGS_067 igs ORF31|petG ORF31-petG 65340 65527 0 188 LSC 0.000000 0 1 206 71 no 1.000000 2 1.000000 NA 0.994681 43.300000 petG gene petG petG 65528 65641 1 114 LSC 0.017544 2 0 300 2 no 1.000000 2 1.000000 NA 1.000000 47.700000 IGS_068 igs petG|trnW petG-trnW 65642 65773 0 132 LSC 0.030769 4 2 39 108 no 1.000000 2 1.000000 NA 0.984848 59.500000 trnW tRNA trnW trnW 65774 65847 -1 74 LSC 0.000000 0 0 54 34 no 0.000000 1 0.000000 NA 1.000000 21.300000 IGS_069 igs trnW|trnP trnW-trnP 65848 65998 0 151 LSC 0.013245 2 0 128 171 no 1.000000 2 1.000000 NA 1.000000 54.700000 trnP tRNA trnP trnP 65999 66072 -1 74 LSC 0.000000 0 0 83 97 no 0.000000 1 0.000000 NA 1.000000 25.000000 IGS_070 igs trnP|psaJ trnP-psaJ 66073 66402 0 330 LSC 0.015152 5 0 157 156 no 1.000000 2 1.000000 NA 1.000000 58.500000 psaJ gene psaJ psaJ 66403 66537 1 135 LSC 0.000000 0 0 105 21 no 0.000000 1 0.000000 NA 1.000000 20.300000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 66538 66963 0 426 LSC 0.025882 11 1 240 253 yes 1.000000 2 1.000000 NA 0.997653 70.200000 rpl33 gene rpl33 rpl33 66964 67164 1 201 LSC 0.000000 0 0 64 52 no 0.000000 1 0.000000 NA 1.000000 22.700000 IGS_072 igs rpl33|rps18 rpl33-rps18 67165 67391 0 227 LSC 0.013453 3 4 265 18 no 1.000000 2 1.000000 NA 0.982379 48.300000 rps18 gene rps18 rps18 67392 67697 1 306 LSC 0.003268 1 0 59 8 no 1.000000 2 1.000000 NA 1.000000 40.100000 IGS_073 igs rps18|rpl20 rps18-rpl20 67698 67993 0 296 LSC 0.024055 7 5 287 116 no 1.000000 2 1.000000 NA 0.983108 61.600000 rpl20 gene rpl20 rpl20 67994 68347 -1 354 LSC 0.008475 3 0 87 206 no 1.000000 2 1.000000 NA 1.000000 50.000000 IGS_074 igs rpl20|rps12 rpl20-rps12 68348 69106 0 759 LSC 0.002653 2 5 95 166 no 1.000000 2 1.000000 NA 0.993412 53.000000 rps12_part1 gene rps12 rps12 69107 69220 -1 114 LSC 0.000000 0 0 260 52 no 0.000000 1 0.000000 NA 1.000000 22.700000 IGS_075 igs rps12|clpP rps12-clpP 69221 69407 0 187 LSC 0.021622 4 2 300 240 no 1.000000 2 1.000000 NA 0.989305 65.900000 clpP gene clpP clpP 69408 71454 -1 2047 LSC 0.006382 13 10 16 5 no 1.000000 2 1.000000 NA 0.995115 47.100000 IGS_076 igs clpP|psbB clpP-psbB 71455 71944 0 490 LSC 0.014315 7 1 108 50 no 1.000000 2 1.000000 NA 0.997959 53.600000 psbB gene psbB psbB 71945 73471 1 1527 LSC 0.003274 5 0 67 18 no 1.000000 2 1.000000 NA 1.000000 46.900000 IGS_077 igs psbB|psbT psbB-psbT 73472 73661 0 190 LSC 0.016575 3 9 165 242 no 1.000000 2 1.000000 NA 0.952632 63.900000 psbT gene psbT psbT 73662 73763 1 102 LSC 0.000000 0 0 115 140 no 0.000000 1 0.000000 NA 1.000000 27.400000 IGS_078 igs psbT|psbN psbT-psbN 73764 73828 0 65 LSC 0.000000 0 0 217 75 no 0.000000 1 0.000000 NA 1.000000 24.400000 psbN gene psbN psbN 73829 73960 -1 132 LSC 0.007576 1 0 282 41 no 1.000000 2 1.000000 NA 1.000000 44.900000 IGS_079 igs psbN|psbH psbN-psbH 73961 74064 0 104 LSC 0.009615 1 0 56 55 no 1.000000 2 1.000000 NA 1.000000 47.200000 psbH gene psbH psbH 74065 74286 1 222 LSC 0.009009 2 0 62 56 no 1.000000 2 1.000000 NA 1.000000 46.900000 IGS_080 igs psbH|petB psbH-petB 74287 74421 0 135 LSC 0.007407 1 0 162 226 no 1.000000 2 1.000000 NA 1.000000 53.900000 petB gene petB petB 74422 75863 1 1442 LSC 0.005548 8 0 78 152 no 1.000000 2 1.000000 NA 1.000000 52.800000 IGS_081 igs petB|petD petB-petD 75864 76060 0 197 LSC 0.005076 1 0 300 182 no 1.000000 2 1.000000 NA 1.000000 54.100000 petD gene petD petD 76061 77285 1 1225 LSC 0.005029 6 32 44 6 no 1.000000 2 1.000000 NA 0.973878 49.600000 IGS_082 igs petD|rpoA petD-rpoA 77286 77484 0 199 LSC 0.055276 11 0 126 300 yes 1.000000 2 1.000000 NA 1.000000 76.400000 rpoA gene rpoA rpoA 77485 78468 -1 984 LSC 0.003049 3 0 38 283 no 1.000000 2 1.000000 NA 1.000000 48.400000 IGS_083 igs rpoA|rps11 rpoA-rps11 78469 78538 0 70 LSC 0.000000 0 1 143 213 no 1.000000 2 1.000000 NA 0.985714 49.600000 rps11 gene rps11 rps11 78539 78955 -1 417 LSC 0.002398 1 0 213 73 no 1.000000 2 1.000000 NA 1.000000 46.800000 IGS_084 igs rps11|rpl36 rps11-rpl36 78956 79072 0 117 LSC 0.008696 1 2 203 181 no 1.000000 2 1.000000 NA 0.982906 57.700000 rpl36 gene rpl36 rpl36 79073 79186 -1 114 LSC 0.000000 0 0 43 67 no 0.000000 1 0.000000 NA 1.000000 22.000000 IGS_085 igs rpl36|rps8 rpl36-rps8 79187 79669 0 483 LSC 0.023061 11 6 157 179 yes 1.000000 2 1.000000 NA 0.987578 67.500000 rps8 gene rps8 rps8 79670 80074 -1 405 LSC 0.002469 1 0 198 26 no 1.000000 2 1.000000 NA 1.000000 43.100000 IGS_086 igs rps8|rpl14 rps8-rpl14 80075 80290 0 216 LSC 0.023148 5 0 225 300 no 1.000000 2 1.000000 NA 1.000000 65.800000 rpl14 gene rpl14 rpl14 80291 80659 -1 369 LSC 0.000000 0 0 11 2 no 0.000000 1 0.000000 NA 1.000000 20.300000 IGS_087 igs rpl14|rpl16 rpl14-rpl16 80660 80785 0 126 LSC 0.023810 3 0 300 4 no 1.000000 2 1.000000 NA 1.000000 51.500000 rpl16 gene rpl16 rpl16 80786 82284 -1 1499 LSC 0.010135 15 19 28 57 no 1.000000 2 1.000000 NA 0.987325 52.900000 IGS_088 igs rpl16|rps3 rpl16-rps3 82285 82468 0 184 LSC 0.010870 2 0 110 300 no 1.000000 2 1.000000 NA 1.000000 52.000000 rps3 gene rps3 rps3 82469 83125 -1 657 LSC 0.001522 1 0 8 46 no 1.000000 2 1.000000 NA 1.000000 45.200000 rpl22 gene rpl22 rpl22 83110 83592 -1 483 LSC 0.006211 3 0 179 132 no 1.000000 2 1.000000 NA 1.000000 54.800000 IGS_090 igs rpl22|rps19 rpl22-rps19 83593 83646 0 54 LSC 0.000000 0 0 300 78 no 0.000000 1 0.000000 NA 1.000000 24.600000 rps19 gene rps19 rps19 83647 83925 -1 279 LSC 0.007168 2 0 300 42 no 1.000000 2 1.000000 NA 1.000000 44.800000 IGS_091 igs rps19|rpl2 rps19-rpl2 83926 83979 0 54 IRb 0.018519 1 0 49 300 no 1.000000 2 1.000000 NA 1.000000 51.800000 rpl2 gene rpl2 rpl2 83980 85481 -1 1502 IRb 0.000666 1 0 11 300 no 1.000000 2 1.000000 NA 1.000000 45.000000 IGS_092 igs rpl2|rpl23 rpl2-rpl23 85482 85499 0 18 IRb 0.000000 0 0 83 300 no 0.000000 1 0.000000 NA 1.000000 25.000000 rpl23 gene rpl23 rpl23 85500 85781 -1 282 IRb 0.000000 0 0 101 300 no 0.000000 1 0.000000 NA 1.000000 26.300000 IGS_093 igs rpl23|trnI rpl23-trnI 85782 85949 0 168 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_094 igs trnI|ycf2 trnI-ycf2 86024 86111 0 88 IRb 0.000000 0 0 300 256 no 0.000000 1 0.000000 NA 1.000000 33.800000 ycf2 gene ycf2 ycf2 86112 92975 1 6864 IRb 0.001459 10 9 300 163 no 1.000000 2 1.000000 NA 0.998689 50.700000 IGS_095 igs ycf2|orf77 ycf2-orf77 92976 93159 0 184 IRb 0.005435 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 55.600000 orf77 gene orf77 orf77 93160 93345 1 186 IRb 0.000000 0 0 20 300 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_096 igs orf77|trnL orf77-trnL 93346 93890 0 545 IRb 0.003670 2 0 206 300 no 1.000000 2 1.000000 NA 1.000000 59.700000 IGS_097 igs trnL|ndhB trnL-ndhB 93972 94555 0 584 IRb 0.000000 0 4 160 300 no 1.000000 2 1.000000 NA 0.993151 56.100000 ndhB gene ndhB ndhB 94556 96410 -1 1855 IRb 0.000541 1 6 300 300 no 1.000000 2 1.000000 NA 0.996765 58.600000 IGS_098 igs ndhB|rps7 ndhB-rps7 96411 97092 0 682 IRb 0.002954 2 5 300 300 no 1.000000 2 1.000000 NA 0.992669 61.200000 rps7 gene rps7 rps7 97093 97560 -1 468 IRb 0.000000 0 0 101 300 no 0.000000 1 0.000000 NA 1.000000 29.800000 IGS_099 igs rps7|trnV rps7-trnV 97561 100315 0 2755 IRb 0.001815 5 0 300 300 no 1.000000 2 1.000000 NA 1.000000 57.200000 IGS_100 igs trnV|rrn16S trnV-rrn16S 100388 100618 0 231 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 100619 102109 1 1491 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 40.000000 IGS_101 igs rrn16S|trnI rrn16S-trnI 102110 102332 0 223 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI_part1 tRNA trnI trnI 102333 102369 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI_part2 tRNA trnI trnI 103317 103351 1 35 IRb 0.000000 0 0 202 280 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_104 igs trnI|trnA trnI-trnA 103352 103415 0 64 IRb 0.000000 0 0 237 216 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA_part1 tRNA trnA trnA 103416 103453 1 38 IRb 0.000000 0 0 300 178 no 0.000000 1 0.000000 NA 1.000000 32.100000 trnA_part2 tRNA trnA trnA 104254 104288 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_107 igs trnA|rrn23S trnA-rrn23S 104289 104440 0 152 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 104441 107250 1 2810 IRb 0.000356 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 56.200000 IGS_108 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 107251 107348 0 98 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 107349 107451 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_109 igs rrn4.5S|rrn5s rrn4.5S-rrn5s 107452 107698 0 247 IRb 0.000000 0 0 300 259 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn5s rRNA rrn5s rrn5s 107699 107819 1 121 IRb 0.000000 0 0 300 138 no 0.000000 1 0.000000 NA 1.000000 29.100000 IGS_110 igs rrn5s|trnR rrn5s-trnR 107820 108070 0 251 IRb 0.004016 1 2 300 95 no 1.000000 2 1.000000 NA 0.992032 47.700000 trnR tRNA trnR trnR 108071 108144 1 74 IRb 0.000000 0 0 112 21 no 0.000000 1 0.000000 NA 1.000000 20.300000 IGS_111 igs trnR|trnN trnR-trnN 108145 108783 0 639 IRb 0.004695 3 0 186 270 no 1.000000 2 1.000000 NA 1.000000 60.400000 trnN tRNA trnN trnN 108784 108855 -1 72 IRb 0.000000 0 0 300 198 no 0.000000 1 0.000000 NA 1.000000 33.600000 IGS_112 igs trnN|ycf1 trnN-ycf1 108856 109175 0 320 IRb 0.003125 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 54.700000 ycf1 gene ycf1 ycf1 109176 110207 1 1032 IRb 0.004845 5 0 121 27 no 1.000000 2 1.000000 NA 1.000000 48.600000 ndhF gene ndhF ndhF 110169 112409 -1 2241 SSC 0.009371 21 0 84 124 no 1.000000 2 1.000000 NA 1.000000 53.900000 IGS_114 igs ndhF|rpl32 ndhF-rpl32 112410 113255 0 846 SSC 0.017964 15 11 189 54 no 1.000000 2 1.000000 NA 0.986998 59.400000 rpl32 gene rpl32 rpl32 113256 113414 1 159 SSC 0.012579 2 0 14 13 no 1.000000 2 1.000000 NA 1.000000 45.700000 IGS_115 igs rpl32|trnL rpl32-trnL 113415 114289 0 875 SSC 0.034364 30 2 43 141 yes 1.000000 2 1.000000 NA 0.997714 66.900000 IGS_116 igs trnL|ycf5 trnL-ycf5 114370 114474 0 105 SSC 0.009524 1 0 169 86 no 1.000000 2 1.000000 NA 1.000000 49.400000 ycf5 gene ycf5 ycf5 114475 115461 1 987 SSC 0.006079 6 0 43 13 no 1.000000 2 1.000000 NA 1.000000 48.200000 IGS_117 igs ycf5|ndhD ycf5-ndhD 115462 115675 0 214 SSC 0.014019 3 0 6 95 no 1.000000 2 1.000000 NA 1.000000 46.000000 ndhD gene ndhD ndhD 115676 117196 -1 1521 SSC 0.007890 12 0 10 99 no 1.000000 2 1.000000 NA 1.000000 49.000000 IGS_118 igs ndhD|psaC ndhD-psaC 117197 117340 0 144 SSC 0.007353 1 8 23 192 no 1.000000 2 1.000000 NA 0.944444 48.100000 psaC gene psaC psaC 117341 117586 -1 246 SSC 0.004065 1 0 44 112 no 1.000000 2 1.000000 NA 1.000000 43.100000 IGS_119 igs psaC|ndhE psaC-ndhE 117587 117830 0 244 SSC 0.004115 1 1 53 300 no 1.000000 2 1.000000 NA 0.995902 44.200000 ndhE gene ndhE ndhE 117831 118136 -1 306 SSC 0.000000 0 0 131 81 no 0.000000 1 0.000000 NA 1.000000 24.900000 IGS_120 igs ndhE|ndhG ndhE-ndhG 118137 118402 0 266 SSC 0.015038 4 0 300 300 no 1.000000 2 1.000000 NA 1.000000 61.100000 ndhG gene ndhG ndhG 118403 118933 -1 531 SSC 0.005650 3 0 31 8 no 1.000000 2 1.000000 NA 1.000000 46.200000 IGS_121 igs ndhG|ndhI ndhG-ndhI 118934 119266 0 333 SSC 0.037037 12 9 8 4 yes 1.000000 2 1.000000 NA 0.972973 62.300000 ndhI gene ndhI ndhI 119267 119770 -1 504 SSC 0.011905 6 0 22 80 no 1.000000 2 1.000000 NA 1.000000 50.200000 IGS_122 igs ndhI|ndhA ndhI-ndhA 119771 119854 0 84 SSC 0.011905 1 0 26 200 no 1.000000 2 1.000000 NA 1.000000 46.300000 ndhA gene ndhA ndhA 119855 122020 -1 2166 SSC 0.011085 24 1 3 22 no 1.000000 2 1.000000 NA 0.999538 49.000000 IGS_123 igs ndhA|ndhH ndhA-ndhH 122021 122021 0 1 SSC 0.000000 0 0 86 21 no 0.000000 1 0.000000 NA 1.000000 20.300000 ndhH gene ndhH ndhH 122022 123203 -1 1182 SSC 0.009306 11 0 87 46 no 1.000000 2 1.000000 NA 1.000000 52.600000 IGS_124 igs ndhH|rps15 ndhH-rps15 123204 123305 0 102 SSC 0.009804 1 0 53 300 no 1.000000 2 1.000000 NA 1.000000 47.100000 rps15 gene rps15 rps15 123306 123572 -1 267 SSC 0.000000 0 0 55 122 no 0.000000 1 0.000000 NA 1.000000 22.900000 IGS_125 igs rps15|ycf1 rps15-ycf1 123573 123883 0 311 SSC 0.013201 4 8 300 50 no 1.000000 2 1.000000 NA 0.974277 51.500000 ycf1 gene ycf1 ycf1 123884 129184 -1 5301 SSC 0.024943 132 9 62 121 yes 1.000000 2 1.000000 NA 0.998302 56.700000 IGS_126 igs ycf1|trnN ycf1-trnN 129185 129504 0 320 IRa 0.003125 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 54.700000 trnN tRNA trnN trnN 129505 129576 1 72 IRa 0.000000 0 0 198 300 no 0.000000 1 0.000000 NA 1.000000 33.600000 IGS_127 igs trnN|trnR trnN-trnR 129577 130215 0 639 IRa 0.004695 3 0 270 186 no 1.000000 2 1.000000 NA 1.000000 60.400000 trnR tRNA trnR trnR 130216 130289 -1 74 IRa 0.000000 0 0 21 112 no 0.000000 1 0.000000 NA 1.000000 20.300000 IGS_128 igs trnR|rrn5S trnR-rrn5S 130290 130540 0 251 IRa 0.004016 1 2 95 300 no 1.000000 2 1.000000 NA 0.992032 47.700000 rrn5S rRNA rrn5S rrn5S 130541 130661 -1 121 IRa 0.000000 0 0 138 300 no 0.000000 1 0.000000 NA 1.000000 29.100000 IGS_129 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 130662 130908 0 247 IRa 0.000000 0 0 259 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 130909 131011 -1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_130 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 131012 131109 0 98 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 131110 133919 -1 2810 IRa 0.000356 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 56.200000 IGS_131 igs rrn23S|trnA rrn23S-trnA 133920 134071 0 152 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA_part2 tRNA trnA trnA 134072 134106 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA_part1 tRNA trnA trnA 134907 134944 -1 38 IRa 0.000000 0 0 178 300 no 0.000000 1 0.000000 NA 1.000000 32.100000 IGS_134 igs trnA|trnI trnA-trnI 134945 135008 0 64 IRa 0.000000 0 0 216 237 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI_part2 tRNA trnI trnI 135009 135043 -1 35 IRa 0.000000 0 0 280 202 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI_part1 tRNA trnI trnI 135991 136027 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_137 igs trnI|rrn16S trnI-rrn16S 136028 136250 0 223 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 136251 137741 -1 1491 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 40.000000 IGS_138 igs rrn16S|trnV rrn16S-trnV 137742 137972 0 231 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_139 igs trnV|rps12 trnV-rps12 138045 139951 0 1907 IRa 0.002098 4 0 300 89 no 1.000000 2 1.000000 NA 1.000000 50.800000 rps12_part2 gene rps12 rps12 139952 140746 1 795 IRa 0.001258 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.500000 IGS_140 igs rps12|rps7 rps12-rps7 140747 140799 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rps7 gene rps7 rps7 140800 141267 1 468 IRa 0.000000 0 0 300 101 no 0.000000 1 0.000000 NA 1.000000 29.800000 IGS_141 igs rps7|ndhB rps7-ndhB 141268 141949 0 682 IRa 0.002954 2 5 300 300 no 1.000000 2 1.000000 NA 0.992669 61.200000 ndhB gene ndhB ndhB 141950 143804 1 1855 IRa 0.000541 1 6 300 300 no 1.000000 2 1.000000 NA 0.996765 58.600000 IGS_142 igs ndhB|trnL ndhB-trnL 143805 144388 0 584 IRa 0.000000 0 4 300 160 no 1.000000 2 1.000000 NA 0.993151 56.100000 IGS_143 igs trnL|orf77 trnL-orf77 144470 145014 0 545 IRa 0.003670 2 0 300 206 no 1.000000 2 1.000000 NA 1.000000 59.700000 orf77 gene orf77 orf77 145015 145200 -1 186 IRa 0.000000 0 0 300 20 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_144 igs orf77|ycf2 orf77-ycf2 145201 145384 0 184 IRa 0.005435 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 55.600000 ycf2 gene ycf2 ycf2 145385 152248 -1 6864 IRa 0.001459 10 9 163 300 no 1.000000 2 1.000000 NA 0.998689 50.700000 IGS_145 igs ycf2|trnI ycf2-trnI 152249 152336 0 88 IRa 0.000000 0 0 256 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_146 igs trnI|rpl23 trnI-rpl23 152411 152578 0 168 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 152579 152860 1 282 IRa 0.000000 0 0 300 101 no 0.000000 1 0.000000 NA 1.000000 26.300000 IGS_147 igs rpl23|rpl2 rpl23-rpl2 152861 152878 0 18 IRa 0.000000 0 0 300 83 no 0.000000 1 0.000000 NA 1.000000 25.000000 rpl2 gene rpl2 rpl2 152879 154380 1 1502 IRa 0.000666 1 0 300 11 no 1.000000 2 1.000000 NA 1.000000 45.000000 IGS_148 igs rpl2|trnH rpl2-trnH 154381 3 0 175 IRa 0.011429 2 0 300 75 no 1.000000 2 1.000000 NA 1.000000 49.700000