feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score psbA gene psbA psbA 111 696 -1 586 LSC 0.025269 56 0 23 1 no 0.846154 12 0.916667 0.025269 1.000000 64.000000 IGS_001 igs psbA|trnK-UUU psbA-trnK-UUU 697 950 0 254 LSC 0.036644 28 25 8 50 no 0.769231 11 0.909091 0.039096 0.937008 66.900000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 951 985 -1 35 LSC 0.000000 0 0 15 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 matK gene matK matK 1252 2805 -1 1554 LSC 0.024481 130 6 2 0 no 1.000000 13 1.000000 0.024445 1.000000 65.600000 IGS_004 igs matK|trnK-UUU matK-trnK-UUU 2806 3830 0 1025 LSC 0.041822 128 153 13 21 yes 1.000000 13 1.000000 0.040654 0.927805 79.500000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 3831 3867 -1 37 LSC 0.014553 1 0 26 0 no 0.000000 2 0.000000 0.014553 1.000000 28.700000 IGS_005 igs trnK-UUU|rps16 trnK-UUU-rps16 3868 4328 0 461 LSC 0.042659 67 185 15 11 no 1.000000 13 1.000000 0.045092 0.967462 77.400000 rps16 gene rps16 rps16 4329 5487 -1 1159 LSC 0.029575 101 36 10 38 no 1.000000 13 1.000000 0.029840 0.995686 72.200000 IGS_006 igs rps16|trnQ-UUG rps16-trnQ-UUG 5488 6443 0 956 LSC 0.067860 250 242 17 47 yes 1.000000 13 1.000000 0.066727 0.985356 84.600000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 6444 6516 -1 73 LSC 0.009132 2 0 12 4 no 0.000000 3 0.000000 0.009132 1.000000 26.600000 IGS_007 igs trnQ-UUG|psbK trnQ-UUG-psbK 6517 6759 0 243 LSC 0.032236 24 8 8 2 no 0.538462 10 0.700000 0.032396 1.000000 59.900000 psbK gene psbK psbK 6760 6933 1 174 LSC 0.028809 17 0 31 33 no 0.538462 10 0.700000 0.028809 1.000000 56.300000 IGS_008 igs psbK|psbI psbK-psbI 6934 7360 0 427 LSC 0.036634 42 391 4 5 no 0.692308 11 0.818182 0.035119 0.981265 63.200000 psbI gene psbI psbI 7361 7471 1 111 LSC 0.034434 11 110 23 10 no 0.230769 7 0.428571 0.034434 1.000000 51.700000 IGS_009 igs psbI|trnS-GCU psbI-trnS-GCU 7472 7562 0 91 LSC 0.036912 8 16 7 16 no 0.307692 7 0.571429 0.036660 0.923077 56.400000 trnS-GCU tRNA trnS-GCU trnS-GCU 7563 7650 -1 88 LSC 0.016900 3 0 1 6 no 0.000000 4 0.000000 0.016900 1.000000 30.700000 IGS_010 igs trnS-GCU|trnG-UCC trnS-GCU-trnG-UCC 7651 8410 0 760 LSC 0.055560 136 73 48 26 yes 0.846154 12 0.916667 0.057192 0.952632 82.300000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 8411 8433 1 23 LSC 0.000000 0 0 24 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 9135 9182 1 48 LSC 0.000000 0 0 101 37 no 0.000000 1 0.000000 0.000000 1.000000 21.500000 IGS_013 igs trnG-UCC|trnR-UCU trnG-UCC-trnR-UCU 9183 9327 0 145 LSC 0.088449 33 6 149 82 yes 0.846154 12 0.916667 0.087416 1.000000 80.800000 trnR-UCU tRNA trnR-UCU trnR-UCU 9328 9399 1 72 LSC 0.004274 2 0 0 10 no 0.153846 3 0.666667 0.004274 1.000000 27.000000 IGS_014 igs trnR-UCU|atpA trnR-UCU-atpA 9400 9566 0 167 LSC 0.036124 23 112 72 29 no 0.846154 12 0.916667 0.034650 0.982036 69.400000 atpA gene atpA atpA 9567 11090 -1 1524 LSC 0.017027 82 0 9 8 no 0.846154 12 0.916667 0.017027 1.000000 55.800000 IGS_015 igs atpA|atpF atpA-atpF 11091 11162 0 72 LSC 0.020655 5 0 47 55 no 0.153846 6 0.333333 0.020655 1.000000 43.100000 atpF gene atpF atpF 11163 12599 -1 1437 LSC 0.025721 121 29 2 3 no 0.846154 12 0.916667 0.025789 0.994433 65.400000 IGS_016 igs atpF|atpH atpF-atpH 12600 12770 0 171 LSC 0.022683 12 15 19 6 no 0.692308 11 0.818182 0.023005 0.959064 55.600000 atpH gene atpH atpH 12771 13016 -1 246 LSC 0.015322 10 0 28 0 no 0.384615 8 0.625000 0.015322 1.000000 37.900000 IGS_017 igs atpH|atpI atpH-atpI 13017 13734 0 718 LSC 0.038403 80 420 53 1 no 0.846154 12 0.916667 0.043286 0.848189 70.000000 atpI gene atpI atpI 13735 14478 -1 744 LSC 0.013717 30 0 15 33 no 0.615385 10 0.800000 0.013717 1.000000 48.900000 IGS_018 igs atpI|rps2 atpI-rps2 14479 14774 0 296 LSC 0.032484 26 145 37 5 no 0.846154 12 0.916667 0.036303 0.969595 62.400000 rps2 gene rps2 rps2 14775 15497 -1 723 LSC 0.018366 37 23 6 3 no 0.846154 12 0.916667 0.018604 0.983402 59.000000 IGS_019 igs rps2|rpoC2 rps2-rpoC2 15498 15713 0 216 LSC 0.032542 22 9 23 4 no 0.692308 11 0.818182 0.029720 0.995370 64.000000 rpoC2 gene rpoC2 rpoC2 15714 16579 -1 866 LSC 0.025783 70 6 10 24 no 0.615385 10 0.800000 0.025786 1.000000 59.800000 rpoC1 gene rpoC1 rpoC1 16576 16716 -1 141 LSC 0.014342 7 123 5 7 no 0.307692 7 0.571429 0.014380 1.000000 37.600000 IGS_021 igs rpoC1|rpoB rpoC1-rpoB 16717 16740 0 24 LSC 0.018162 2 0 25 25 no 0.076923 3 0.333333 0.018162 1.000000 40.700000 rpoB gene rpoB rpoB 16741 19024 -1 2284 LSC 0.021759 164 1092 16 14 no 1.000000 13 1.000000 0.024717 0.995184 64.600000 IGS_022 igs rpoB|trnC-GCA rpoB-trnC-GCA 19025 20288 0 1264 LSC 0.037609 153 66 6 3 no 0.846154 12 0.916667 0.037169 0.996835 76.200000 trnC-GCA tRNA trnC-GCA trnC-GCA 20289 20359 1 71 LSC 0.015890 5 0 0 19 no 0.307692 6 0.666667 0.015890 1.000000 40.500000 IGS_023 igs trnC-GCA|petN trnC-GCA-petN 20360 21035 0 676 LSC 0.036403 77 475 58 9 no 0.846154 12 0.916667 0.037391 0.963018 71.800000 petN gene petN petN 21036 21126 1 91 LSC 0.014785 5 91 11 32 no 0.153846 6 0.333333 0.014949 0.989011 37.000000 IGS_024 igs petN|psbM petN-psbM 21127 21866 0 740 LSC 0.036144 77 708 0 46 no 0.846154 12 0.916667 0.049829 0.404054 62.200000 psbM gene psbM psbM 21867 21971 -1 105 LSC 0.016854 4 105 3 17 no 0.384615 8 0.625000 0.038701 0.285714 29.600000 IGS_025 igs psbM|trnD-GUC psbM-trnD-GUC 21972 23056 0 1085 LSC 0.050826 180 813 19 75 yes 1.000000 13 1.000000 0.063531 0.986175 83.000000 trnD-GUC tRNA trnD-GUC trnD-GUC 23057 23130 -1 74 LSC 0.000000 0 0 7 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_026 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 23131 23423 0 293 LSC 0.030916 28 40 81 57 no 0.538462 10 0.700000 0.031725 0.965870 63.900000 trnY-GUA tRNA trnY-GUA trnY-GUA 23424 23507 -1 84 LSC 0.004579 1 0 6 16 no 0.000000 2 0.000000 0.004579 1.000000 22.700000 IGS_027 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 23508 23566 0 59 LSC 0.055193 10 0 26 16 no 0.230769 7 0.428571 0.055193 1.000000 59.300000 trnE-UUC tRNA trnE-UUC trnE-UUC 23567 23639 -1 73 LSC 0.007025 1 0 2 35 no 0.000000 2 0.000000 0.007025 1.000000 23.800000 IGS_028 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 23640 24743 0 1104 LSC 0.031152 110 199 56 27 no 1.000000 13 1.000000 0.030952 0.958333 76.200000 trnT-GGU tRNA trnT-GGU trnT-GGU 24744 24815 1 72 LSC 0.012963 3 72 0 35 no 0.153846 5 0.400000 0.012963 1.000000 32.700000 IGS_029 igs trnT-GGU|psbD trnT-GGU-psbD 24816 25770 0 955 LSC 0.037774 114 943 44 11 no 1.000000 13 1.000000 0.035562 0.993717 76.800000 psbD gene psbD psbD 25771 26855 1 1085 LSC 0.016785 61 1085 24 6 no 0.846154 12 0.916667 0.017140 0.978802 59.000000 psbC gene psbC psbC 26803 28155 1 1353 LSC 0.019593 88 1353 55 0 no 0.846154 12 0.916667 0.019359 1.000000 61.500000 IGS_031 igs psbC|trnS-UGA psbC-trnS-UGA 28156 28294 0 139 LSC 0.060628 23 98 1 9 no 0.538462 10 0.700000 0.058765 0.992806 68.000000 trnS-UGA tRNA trnS-UGA trnS-UGA 28295 28386 -1 92 LSC 0.020903 7 0 19 13 no 0.307692 7 0.571429 0.020903 1.000000 44.400000 IGS_032 igs trnS-UGA|psbZ trnS-UGA-psbZ 28387 28612 0 226 LSC 0.024336 19 4 27 22 no 0.692308 11 0.818182 0.024441 1.000000 57.000000 psbZ gene psbZ psbZ 28613 28801 1 189 LSC 0.029033 18 0 38 9 no 0.461538 9 0.666667 0.029033 1.000000 53.000000 IGS_033 igs psbZ|trnG-UCC psbZ-trnG-UCC 28802 29019 0 218 LSC 0.030480 21 6 6 12 no 0.692308 11 0.818182 0.030158 1.000000 61.000000 IGS_034 igs trnG-UCC|trnfM-CAU trnG-UCC-trnfM-CAU 29091 29263 0 173 LSC 0.057382 28 86 9 76 no 0.846154 12 0.916667 0.055233 0.832370 69.800000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 29264 29337 -1 74 LSC 0.000000 0 0 9 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_035 igs trnfM-CAU|rps14 trnfM-CAU-rps14 29338 29492 0 155 LSC 0.030240 19 1 83 9 no 0.461538 9 0.666667 0.029770 1.000000 54.900000 rps14 gene rps14 rps14 29493 29795 -1 303 LSC 0.018363 15 0 13 6 no 0.538462 10 0.700000 0.018363 1.000000 43.800000 IGS_036 igs rps14|psaB rps14-psaB 29796 29935 0 140 LSC 0.054945 21 6 17 1 no 0.538462 10 0.700000 0.054541 1.000000 69.100000 psaB gene psaB psaB 29936 30925 -1 990 LSC 0.021911 72 12 14 3 no 0.846154 12 0.916667 0.022171 0.988889 61.100000 IGS_037 igs psaB|ycf3 psaB-ycf3 30926 31979 0 1054 LSC 0.030407 98 332 2 51 no 0.846154 12 0.916667 0.031895 0.973435 69.700000 ycf3 gene ycf3 ycf3 31980 33014 -1 1035 LSC 0.021997 76 52 3 7 no 1.000000 13 1.000000 0.022660 0.972947 68.200000 IGS_038 igs ycf3|trnS-GGA ycf3-trnS-GGA 33015 33506 0 492 LSC 0.039382 57 359 12 8 no 1.000000 13 1.000000 0.045000 0.676829 68.300000 trnS-GGA tRNA trnS-GGA trnS-GGA 33507 33593 1 87 LSC 0.037725 10 0 17 15 no 0.384615 9 0.555556 0.037725 1.000000 56.600000 IGS_039 igs trnS-GGA|rps4 trnS-GGA-rps4 33594 33890 0 297 LSC 0.057157 52 56 9 54 no 0.846154 12 0.916667 0.054781 1.000000 75.800000 rps4 gene rps4 rps4 33891 34496 -1 606 LSC 0.018363 37 0 32 22 no 0.692308 11 0.818182 0.018363 1.000000 55.500000 IGS_040 igs rps4|trnT-UGU rps4-trnT-UGU 34497 34814 0 318 LSC 0.031293 34 9 48 44 no 0.692308 11 0.818182 0.031015 0.971698 64.600000 trnT-UGU tRNA trnT-UGU trnT-UGU 34815 34887 -1 73 LSC 0.009835 2 0 17 62 no 0.153846 4 0.500000 0.009835 1.000000 30.800000 IGS_041 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 34888 35477 0 590 LSC 0.051140 92 71 28 12 yes 0.846154 12 0.916667 0.045725 0.905085 79.600000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 35478 35512 1 35 LSC 0.014652 1 0 2 13 no 0.000000 2 0.000000 0.014652 1.000000 29.100000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 36343 36392 1 50 LSC 0.022564 5 0 3 19 no 0.307692 6 0.666667 0.022564 1.000000 47.400000 IGS_044 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 36393 36785 0 393 LSC 0.034138 46 67 26 2 no 0.846154 12 0.916667 0.032839 0.870229 66.700000 trnF-GAA tRNA trnF-GAA trnF-GAA 36786 36858 1 73 LSC 0.009484 3 0 51 1 no 0.076923 3 0.333333 0.009484 1.000000 29.700000 IGS_045 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 36859 37374 0 516 LSC 0.040036 61 436 70 5 no 0.846154 12 0.916667 0.041621 0.972868 70.900000 ndhJ gene ndhJ ndhJ 37375 37846 -1 472 LSC 0.040669 52 472 0 12 no 0.692308 11 0.818182 0.041639 0.993644 66.800000 ndhK gene ndhK ndhK 37375 38382 -1 1008 LSC 0.040952 112 1006 0 1 no 0.846154 12 0.916667 0.042637 0.997024 73.000000 ndhC gene ndhC ndhC 38373 38727 -1 355 LSC 0.038355 42 61 21 35 no 0.846154 12 0.916667 0.036599 1.000000 72.600000 IGS_048 igs ndhC|trnV-UAC ndhC-trnV-UAC 38728 39319 0 592 LSC 0.049706 80 277 15 10 yes 0.846154 12 0.916667 0.050400 0.967905 80.000000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 39320 39365 -1 46 LSC 0.036232 7 0 7 1 no 0.384615 7 0.714286 0.036232 1.000000 54.800000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 39947 39985 -1 39 LSC 0.000000 0 0 40 31 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_051 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 39986 40169 0 184 LSC 0.030246 16 30 79 41 no 0.538462 10 0.700000 0.030254 1.000000 62.100000 trnM-CAU tRNA trnM-CAU trnM-CAU 40170 40241 1 72 LSC 0.009615 3 0 21 17 no 0.153846 4 0.500000 0.009615 1.000000 32.400000 IGS_052 igs trnM-CAU|atpE trnM-CAU-atpE 40242 40413 0 172 LSC 0.027877 19 0 30 0 no 0.615385 10 0.800000 0.027877 1.000000 55.300000 atpE gene atpE atpE 40414 40818 -1 405 LSC 0.020988 30 0 30 5 no 0.846154 12 0.916667 0.020988 1.000000 55.900000 atpB gene atpB atpB 40815 42311 -1 1497 LSC 0.016495 80 0 16 10 no 0.846154 12 0.916667 0.016495 1.000000 55.700000 IGS_054 igs atpB|rbcL atpB-rbcL 42312 43213 0 902 LSC 0.058067 125 595 16 4 yes 1.000000 13 1.000000 0.038942 0.808204 76.700000 rbcL gene rbcL rbcL 43214 44647 1 1434 LSC 0.022870 118 8 69 14 no 0.846154 12 0.916667 0.022938 1.000000 63.100000 IGS_055 igs rbcL|accD rbcL-accD 44648 45302 0 655 LSC 0.037485 74 71 33 5 no 0.846154 12 0.916667 0.038573 0.945038 74.600000 accD gene accD accD 45303 46784 1 1482 LSC 0.021791 106 12 41 4 no 0.846154 12 0.916667 0.021818 1.000000 60.900000 IGS_056 igs accD|psaI accD-psaI 46785 47321 0 537 LSC 0.048559 76 338 7 6 yes 0.846154 12 0.916667 0.051259 0.985102 78.400000 psaI gene psaI psaI 47322 47432 1 111 LSC 0.066749 20 111 9 3 no 0.692308 11 0.818182 0.066749 1.000000 70.800000 IGS_057 igs psaI|ycf4 psaI-ycf4 47433 47821 0 389 LSC 0.033795 39 16 19 5 no 0.846154 12 0.916667 0.032401 0.992288 69.300000 ycf4 gene ycf4 ycf4 47822 48320 1 499 LSC 0.029023 45 43 1 21 no 0.846154 12 0.916667 0.029514 0.997996 69.100000 psbE gene psbE psbE 48319 48402 -1 84 LSC 0.022186 6 84 21 1 no 0.307692 7 0.571429 0.022186 1.000000 47.400000 IGS_059 igs psbE|petL psbE-petL 48403 49432 0 1030 LSC 0.035789 114 850 14 4 no 0.846154 12 0.916667 0.036321 0.912621 71.000000 petL gene petL petL 49433 49528 1 96 LSC 0.023504 7 0 0 13 no 0.076923 6 0.166667 0.023504 1.000000 39.900000 IGS_060 igs petL|petG petL-petG 49529 49717 0 189 LSC 0.049340 26 2 56 20 no 1.000000 13 1.000000 0.049075 1.000000 75.000000 petG gene petG petG 49718 49831 1 114 LSC 0.025416 11 0 1 7 no 0.307692 7 0.571429 0.025416 1.000000 48.100000 IGS_061 igs petG|trnW-CCA petG-trnW-CCA 49832 49948 0 117 LSC 0.043064 15 0 27 45 no 0.615385 10 0.800000 0.043064 1.000000 64.200000 trnW-CCA tRNA trnW-CCA trnW-CCA 49949 50022 -1 74 LSC 0.012821 3 0 3 4 no 0.076923 4 0.250000 0.012821 1.000000 31.300000 IGS_062 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 50023 50154 0 132 LSC 0.088287 33 1 4 88 no 0.846154 12 0.916667 0.088961 0.992424 70.600000 trnP-UGG tRNA trnP-UGG trnP-UGG 50155 50228 -1 74 LSC 0.002079 1 0 7 14 no 0.076923 2 0.500000 0.002079 1.000000 23.300000 IGS_063 igs trnP-UGG|rpl33 trnP-UGG-rpl33 50229 50800 0 572 LSC 0.052313 83 233 81 13 no 0.846154 12 0.916667 0.057410 0.659091 72.000000 rpl33 gene rpl33 rpl33 50801 51001 1 201 LSC 0.017859 11 0 5 13 no 0.307692 8 0.500000 0.017859 1.000000 39.800000 IGS_064 igs rpl33|rps18 rpl33-rps18 51002 51180 0 179 LSC 0.032517 19 26 25 15 no 0.538462 10 0.700000 0.035803 0.944134 61.000000 rps18 gene rps18 rps18 51181 51471 1 291 LSC 0.020619 20 0 55 5 no 0.538462 10 0.700000 0.020619 1.000000 47.100000 IGS_065 igs rps18|rpl20 rps18-rpl20 51472 51751 0 280 LSC 0.026236 24 21 15 6 no 0.692308 11 0.818182 0.027514 0.975000 59.600000 rpl20 gene rpl20 rpl20 51752 52111 -1 360 LSC 0.017984 21 3 31 43 no 0.615385 10 0.800000 0.018135 0.991667 50.000000 IGS_066 igs rpl20|rps12 rpl20-rps12 52112 52799 0 688 LSC 0.026474 57 27 5 72 no 1.000000 13 1.000000 0.025438 0.988372 70.800000 rps12_part1 gene rps12 rps12 52800 52913 -1 114 LSC 0.004948 2 0 34 12 no 0.000000 3 0.000000 0.004948 1.000000 24.100000 IGS_067 igs rps12|clpP rps12-clpP 52914 53051 0 138 LSC 0.023040 10 5 29 7 no 0.538462 10 0.700000 0.023906 0.963768 51.900000 clpP gene clpP clpP 53052 55254 -1 2203 LSC 0.031388 200 344 5 22 no 1.000000 13 1.000000 0.029724 0.974126 73.200000 IGS_068 igs clpP|psbB clpP-psbB 55255 55830 0 576 LSC 0.048029 83 266 34 38 yes 1.000000 13 1.000000 0.046055 0.996528 84.700000 psbB gene psbB psbB 55831 56010 1 180 LSC 0.019943 14 0 14 22 no 0.538462 9 0.777778 0.019943 1.000000 48.600000 IGS_069 igs psbB|petD psbB-petD 56011 56826 0 816 LSC 0.034404 87 52 35 6 no 0.846154 12 0.916667 0.034536 0.988971 74.900000 petD gene petD petD 56827 57109 1 283 LSC 0.028722 25 0 26 27 no 0.461538 9 0.666667 0.028722 1.000000 53.300000 IGS_070 igs petD|rpoA petD-rpoA 57110 57476 0 367 LSC 0.054894 61 35 9 17 no 0.692308 11 0.818182 0.054396 0.997275 74.500000 rpoA gene rpoA rpoA 57477 58379 -1 903 LSC 0.036084 107 27 2 12 no 0.846154 12 0.916667 0.036309 1.000000 73.300000 IGS_071 igs rpoA|rps11 rpoA-rps11 58380 58462 0 83 LSC 0.034291 8 3 7 24 no 0.538462 10 0.700000 0.034488 1.000000 61.300000 rps11 gene rps11 rps11 58463 58879 -1 417 LSC 0.020046 27 0 11 9 no 0.692308 11 0.818182 0.020046 1.000000 52.000000 IGS_072 igs rps11|rpl36 rps11-rpl36 58880 59055 0 176 LSC 0.038129 22 18 13 44 no 0.692308 11 0.818182 0.036333 0.965909 67.400000 rpl36 gene rpl36 rpl36 59056 59169 -1 114 LSC 0.010571 5 0 7 17 no 0.230769 6 0.500000 0.010571 1.000000 33.800000 IGS_073 igs rpl36|infA rpl36-infA 59170 59286 0 117 LSC 0.036051 14 0 64 10 no 0.615385 10 0.800000 0.036051 1.000000 59.800000 infA gene infA infA 59287 59520 -1 234 LSC 0.016053 14 0 14 1 no 0.615385 10 0.800000 0.016053 1.000000 45.100000 IGS_074 igs infA|rps8 infA-rps8 59521 59633 0 113 LSC 0.040844 16 0 13 1 no 0.692308 11 0.818182 0.040844 1.000000 62.700000 rps8 gene rps8 rps8 59634 60029 -1 396 LSC 0.023083 29 0 27 2 no 0.538462 10 0.700000 0.023083 1.000000 50.500000 IGS_075 igs rps8|rpl14 rps8-rpl14 60030 60234 0 205 LSC 0.023117 15 35 7 12 no 0.692308 11 0.818182 0.024526 0.956098 56.300000 rpl14 gene rpl14 rpl14 60235 60603 -1 369 LSC 0.020290 27 0 2 57 no 0.692308 11 0.818182 0.020290 1.000000 51.600000 IGS_076 igs rpl14|rpl16 rpl14-rpl16 60604 60752 0 149 LSC 0.042334 20 12 9 25 no 0.692308 11 0.818182 0.046029 0.919463 67.100000 rpl16 gene rpl16 rpl16 60753 62490 -1 1738 LSC 0.038773 201 262 22 10 no 1.000000 13 1.000000 0.036707 0.900460 76.500000 IGS_077 igs rpl16|rps3 rpl16-rps3 62491 62689 0 199 LSC 0.058943 37 65 69 30 no 0.846154 12 0.916667 0.064900 0.919598 74.400000 rps3 gene rps3 rps3 62690 63346 -1 657 LSC 0.020997 47 0 7 6 no 0.846154 12 0.916667 0.020997 1.000000 59.700000 IGS_078 igs rps3|rpl22 rps3-rpl22 63347 63395 0 49 LSC 0.027473 4 1 47 6 no 0.153846 4 0.500000 0.027009 1.000000 47.200000 rpl22 gene rpl22 rpl22 63396 63761 -1 366 LSC 0.022769 27 0 31 5 no 0.692308 11 0.818182 0.022769 1.000000 52.900000 IGS_079 igs rpl22|rps19 rpl22-rps19 63762 63942 0 181 IRb 0.049659 32 91 7 54 no 0.615385 10 0.800000 0.051424 1.000000 70.500000 rps19 gene rps19 rps19 63943 64221 -1 279 IRb 0.005147 4 1 18 22 no 0.230769 6 0.500000 0.005149 1.000000 29.000000 IGS_080 igs rps19|trnH-GUG rps19-trnH-GUG 64222 64345 0 124 IRb 0.013854 5 1 146 79 no 0.153846 6 0.333333 0.013870 1.000000 39.800000 trnH-GUG tRNA trnH-GUG trnH-GUG 64346 64420 1 75 IRb 0.000000 0 0 21 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_081 igs trnH-GUG|rpl2 trnH-GUG-rpl2 64421 64463 0 43 IRb 0.066190 8 0 96 94 no 0.384615 8 0.625000 0.066190 1.000000 68.000000 rpl2 gene rpl2 rpl2 64464 65958 -1 1495 IRb 0.006689 40 5 9 8 no 0.846154 12 0.916667 0.006693 1.000000 48.200000 IGS_082 igs rpl2|rpl23 rpl2-rpl23 65959 65976 0 18 IRb 0.015670 1 0 64 27 no 0.000000 2 0.000000 NA 1.000000 34.800000 rpl23 gene rpl23 rpl23 65977 66246 -1 270 IRb 0.008737 9 0 9 59 no 0.384615 8 0.625000 0.008737 1.000000 34.700000 IGS_083 igs rpl23|trnM-CAU rpl23-trnM-CAU 66247 66411 0 165 IRb 0.007148 6 0 26 116 no 0.384615 7 0.714286 0.007148 1.000000 35.700000 trnM-CAU tRNA trnM-CAU trnM-CAU 66412 66485 -1 74 IRb 0.000000 0 0 81 42 no 0.000000 1 0.000000 0.000000 1.000000 21.900000 IGS_084 igs trnM-CAU|ycf2 trnM-CAU-ycf2 66486 66553 0 68 IRb 0.007919 2 0 155 98 no 0.076923 3 0.333333 0.007919 1.000000 34.800000 ycf2 gene ycf2 ycf2 66554 73315 1 6762 IRb 0.012104 268 84 25 32 no 0.846154 12 0.916667 0.012122 1.000000 48.400000 IGS_085 igs ycf2|trnL-CAA ycf2-trnL-CAA 73316 73971 0 656 IRb 0.009226 20 357 13 91 no 0.846154 12 0.916667 0.009898 1.000000 54.700000 trnL-CAA tRNA trnL-CAA trnL-CAA 73972 74052 -1 81 IRb 0.001899 1 0 39 10 no 0.076923 2 0.500000 0.001899 1.000000 23.300000 IGS_086 igs trnL-CAA|ndhB trnL-CAA-ndhB 74053 74619 0 567 IRb 0.011441 23 51 120 2 no 0.615385 10 0.800000 0.011696 1.000000 52.100000 ndhB gene ndhB ndhB 74620 76811 -1 2192 IRb 0.014018 116 960 28 36 no 0.846154 12 0.916667 0.014033 0.997263 59.000000 IGS_087 igs ndhB|rps7 ndhB-rps7 76812 77134 0 323 IRb 0.013243 13 25 28 27 no 0.538462 10 0.700000 0.013234 1.000000 48.400000 rps7 gene rps7 rps7 77135 77602 -1 468 IRb 0.008328 12 0 4 240 no 0.384615 8 0.625000 0.008328 1.000000 36.700000 IGS_088 igs rps7|rps12 rps7-rps12 77603 77656 0 54 IRb 0.002849 1 0 8 186 no 0.076923 2 0.500000 0.002849 1.000000 24.400000 rps12_part2 gene rps12 rps12 77657 78465 -1 809 IRb 0.005103 15 9 62 2 no 0.307692 7 0.571429 0.005114 1.000000 36.900000 IGS_089 igs rps12|trnV-GAC rps12-trnV-GAC 78466 80176 0 1711 IRb 0.014965 90 571 300 27 no 0.846154 12 0.916667 0.015247 0.999416 60.900000 trnV-GAC tRNA trnV-GAC trnV-GAC 80177 80248 1 72 IRb 0.007479 2 0 51 12 no 0.076923 3 0.333333 0.007479 1.000000 27.900000 IGS_090 igs trnV-GAC|EZZ27_pgr008 trnV-GAC-EZZ27_pgr008 80249 80481 0 233 IRb 0.023055 14 1 44 14 no 0.461538 9 0.666667 0.023110 1.000000 46.800000 EZZ27_pgr008 rRNA EZZ27_pgr008 EZZ27_pgr008 80482 81971 1 1490 IRb 0.003184 16 0 29 71 no 0.384615 8 0.625000 0.003184 1.000000 37.200000 IGS_091 igs EZZ27_pgr008|trnI-GAU EZZ27_pgr008-trnI-GAU 81972 82274 0 303 IRb 0.031819 28 0 100 38 no 0.692308 11 0.818182 0.031819 1.000000 60.500000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 82275 82316 1 42 IRb 0.006716 1 0 27 45 no 0.000000 2 0.000000 0.006716 1.000000 26.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 83249 83283 1 35 IRb 0.000000 0 0 22 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_094 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 83284 83347 0 64 IRb 0.015224 4 1 57 31 no 0.230769 5 0.600000 0.015275 1.000000 42.000000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 83348 83385 1 38 IRb 0.007422 1 0 55 70 no 0.000000 2 0.000000 0.007422 1.000000 29.500000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 84188 84222 1 35 IRb 0.000000 0 0 126 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_097 igs trnA-UGC|EZZ27_pgr007 trnA-UGC-EZZ27_pgr007 84223 84367 0 145 IRb 0.014147 6 15 161 130 no 0.307692 7 0.571429 0.014555 1.000000 51.800000 EZZ27_pgr007 rRNA EZZ27_pgr007 EZZ27_pgr007 84368 87174 1 2807 IRb 0.002896 29 0 22 39 no 0.538462 10 0.700000 0.002896 1.000000 36.600000 IGS_098 igs EZZ27_pgr007|EZZ27_pgr006 EZZ27_pgr007-EZZ27_pgr006 87175 87272 0 98 IRb 0.011251 4 0 186 58 no 0.076923 4 0.250000 0.011251 1.000000 34.700000 EZZ27_pgr006 rRNA EZZ27_pgr006 EZZ27_pgr006 87273 87375 1 103 IRb 0.006721 3 0 55 22 no 0.076923 3 0.333333 0.006721 1.000000 28.500000 IGS_099 igs EZZ27_pgr006|EZZ27_pgr005 EZZ27_pgr006-EZZ27_pgr005 87376 87586 0 211 IRb 0.019298 15 5 44 56 no 0.615385 10 0.800000 0.019069 1.000000 53.900000 EZZ27_pgr005 rRNA EZZ27_pgr005 EZZ27_pgr005 87587 87707 1 121 IRb 0.007841 3 0 16 50 no 0.000000 3 0.000000 0.007841 1.000000 26.600000 IGS_100 igs EZZ27_pgr005|trnR-ACG EZZ27_pgr005-trnR-ACG 87708 87947 0 240 IRb 0.020833 16 115 28 13 no 0.692308 11 0.818182 0.020025 1.000000 55.400000 trnR-ACG tRNA trnR-ACG trnR-ACG 87948 88021 1 74 IRb 0.011088 3 0 4 9 no 0.076923 4 0.250000 0.011088 1.000000 30.500000 IGS_101 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 88022 88599 0 578 IRb 0.019180 45 64 32 160 no 0.692308 11 0.818182 0.017089 0.948097 62.600000 trnN-GUU tRNA trnN-GUU trnN-GUU 88600 88671 -1 72 IRb 0.006410 3 0 15 88 no 0.153846 3 0.666667 0.006410 1.000000 30.900000 IGS_102 igs trnN-GUU|ycf1 trnN-GUU-ycf1 88672 89021 0 350 IRb 0.014258 13 34 87 27 no 0.384615 9 0.555556 0.013689 0.951429 44.500000 ycf1 gene ycf1 ycf1 89022 90140 1 1119 IRb 0.078027 239 868 60 14 no 0.846154 12 0.916667 0.135251 0.924933 76.000000 IGS_103 igs ycf1|rpl32 ycf1-rpl32 90141 90586 0 446 SSC 0.166239 188 373 3 17 yes 1.000000 13 1.000000 0.179653 0.957399 76.400000 rpl32 gene rpl32 rpl32 90587 90760 1 174 SSC 0.030990 18 2 1 21 no 0.538462 10 0.700000 0.030663 1.000000 56.700000 IGS_104 igs rpl32|trnL-UAG rpl32-trnL-UAG 90761 91396 0 636 SSC 0.050575 105 63 4 87 yes 0.846154 12 0.916667 0.049015 0.965409 81.000000 trnL-UAG tRNA trnL-UAG trnL-UAG 91397 91476 1 80 SSC 0.001923 1 0 31 7 no 0.076923 2 0.500000 0.001923 1.000000 23.100000 IGS_105 igs trnL-UAG|ccsA trnL-UAG-ccsA 91477 91607 0 131 SSC 0.055054 24 124 111 10 no 0.538462 10 0.700000 0.053652 0.938931 66.600000 ccsA gene ccsA ccsA 91608 92108 1 501 SSC 0.037072 60 446 8 1 no 1.000000 13 1.000000 0.036532 1.000000 75.000000 ndhG gene ndhG ndhG 92104 92430 -1 327 SSC 0.073425 78 327 0 2 no 0.461538 9 0.666667 0.075111 1.000000 63.000000 IGS_107 igs ndhG|ndhA ndhG-ndhA 92431 92538 0 108 SSC 0.063026 23 99 7 0 no 0.384615 8 0.625000 0.065226 1.000000 61.000000 ndhA gene ndhA ndhA 92539 92987 -1 449 SSC 0.191723 207 391 0 18 yes 0.846154 12 0.916667 0.197864 0.808463 70.300000 IGS_108 igs ndhA|rps15 ndhA-rps15 92988 93171 0 184 SSC 0.138921 64 78 4 1 no 0.461538 9 0.666667 0.154052 0.896739 64.400000 rps15 gene rps15 rps15 93172 93444 -1 273 SSC 0.026871 24 9 9 6 no 0.846154 12 0.916667 0.026946 1.000000 62.100000 IGS_109 igs rps15|ycf1 rps15-ycf1 93445 93801 0 357 SSC 0.041536 45 30 3 2 no 1.000000 13 1.000000 0.038407 0.960784 74.700000 ycf1 gene ycf1 ycf1 93802 99042 -1 5241 SSC 0.034363 573 98 38 60 no 0.846154 12 0.916667 0.034401 0.995993 67.600000 IGS_110 igs ycf1|trnN-GUU ycf1-trnN-GUU 99043 99392 0 350 IRa 0.013227 12 34 27 87 no 0.384615 9 0.555556 0.012976 0.951429 43.700000 trnN-GUU tRNA trnN-GUU trnN-GUU 99393 99464 1 72 IRa 0.006410 3 0 88 15 no 0.153846 3 0.666667 0.006410 1.000000 30.900000 IGS_111 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 99465 100042 0 578 IRa 0.017477 37 57 160 32 no 0.692308 11 0.818182 0.015787 0.948097 60.100000 trnR-ACG tRNA trnR-ACG trnR-ACG 100043 100116 -1 74 IRa 0.011088 3 0 9 4 no 0.076923 4 0.250000 0.011088 1.000000 30.500000 IGS_112 igs trnR-ACG|EZZ27_pgr004 trnR-ACG-EZZ27_pgr004 100117 100356 0 240 IRa 0.020833 16 115 13 28 no 0.692308 11 0.818182 0.020025 1.000000 55.400000 EZZ27_pgr004 rRNA EZZ27_pgr004 EZZ27_pgr004 100357 100477 -1 121 IRa 0.007841 3 0 50 16 no 0.000000 3 0.000000 0.007841 1.000000 26.600000 IGS_113 igs EZZ27_pgr004|EZZ27_pgr003 EZZ27_pgr004-EZZ27_pgr003 100478 100688 0 211 IRa 0.019298 15 5 56 44 no 0.615385 10 0.800000 0.019069 1.000000 53.900000 EZZ27_pgr003 rRNA EZZ27_pgr003 EZZ27_pgr003 100689 100791 -1 103 IRa 0.006721 3 0 22 55 no 0.076923 3 0.333333 0.006721 1.000000 28.500000 IGS_114 igs EZZ27_pgr003|EZZ27_pgr002 EZZ27_pgr003-EZZ27_pgr002 100792 100889 0 98 IRa 0.011251 4 0 58 186 no 0.076923 4 0.250000 0.011251 1.000000 34.700000 EZZ27_pgr002 rRNA EZZ27_pgr002 EZZ27_pgr002 100890 103696 -1 2807 IRa 0.002896 29 0 39 22 no 0.538462 10 0.700000 0.002896 1.000000 36.600000 IGS_115 igs EZZ27_pgr002|trnA-UGC EZZ27_pgr002-trnA-UGC 103697 103841 0 145 IRa 0.014147 6 15 130 161 no 0.307692 7 0.571429 0.014555 1.000000 51.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 103842 103876 -1 35 IRa 0.000000 0 0 15 126 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 104679 104716 -1 38 IRa 0.007422 1 1 70 55 no 0.076923 3 0.333333 0.007441 1.000000 34.200000 IGS_118 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 104717 104780 0 64 IRa 0.015224 4 0 31 57 no 0.230769 5 0.600000 0.015224 1.000000 40.100000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 104781 104815 -1 35 IRa 0.000000 0 0 2 22 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 105748 105789 -1 42 IRa 0.006716 1 0 45 27 no 0.000000 2 0.000000 0.006716 1.000000 26.800000 IGS_121 igs trnI-GAU|EZZ27_pgr001 trnI-GAU-EZZ27_pgr001 105790 106092 0 303 IRa 0.031819 28 0 38 100 no 0.692308 11 0.818182 0.031819 1.000000 60.500000 EZZ27_pgr001 rRNA EZZ27_pgr001 EZZ27_pgr001 106093 107582 -1 1490 IRa 0.003184 16 0 71 29 no 0.384615 8 0.625000 0.003184 1.000000 37.200000 IGS_122 igs EZZ27_pgr001|trnV-GAC EZZ27_pgr001-trnV-GAC 107583 107815 0 233 IRa 0.023055 14 1 14 44 no 0.461538 9 0.666667 0.023110 1.000000 46.800000 trnV-GAC tRNA trnV-GAC trnV-GAC 107816 107887 -1 72 IRa 0.007479 2 0 12 51 no 0.076923 3 0.333333 0.007479 1.000000 27.900000 IGS_123 igs trnV-GAC|rps12 trnV-GAC-rps12 107888 109598 0 1711 IRa 0.016046 96 569 27 300 no 0.846154 12 0.916667 0.016082 0.999416 61.800000 rps12_part2 gene rps12 rps12 109599 109829 1 231 IRa 0.001332 2 0 2 102 no 0.153846 3 0.666667 0.001332 1.000000 23.500000 IGS_124 igs rps12|rps12 rps12-rps12 109830 110377 0 548 IRa 0.007027 13 9 233 92 no 0.230769 6 0.500000 0.006854 1.000000 43.300000 rps12_part3 gene rps12 rps12 110378 110407 1 30 IRa 0.000000 0 0 156 62 no 0.000000 1 0.000000 0.000000 1.000000 23.400000 IGS_125 igs rps12|rps7 rps12-rps7 110408 110461 0 54 IRa 0.002849 1 0 186 8 no 0.076923 2 0.500000 0.002849 1.000000 24.400000 rps7 gene rps7 rps7 110462 110929 1 468 IRa 0.008328 12 0 240 4 no 0.384615 8 0.625000 0.008328 1.000000 36.700000 IGS_126 igs rps7|ndhB rps7-ndhB 110930 111252 0 323 IRa 0.013243 13 25 27 28 no 0.538462 10 0.700000 0.013234 1.000000 48.400000 ndhB gene ndhB ndhB 111253 113444 1 2192 IRa 0.013942 115 960 36 28 no 0.846154 12 0.916667 0.013965 0.997263 58.900000 IGS_127 igs ndhB|trnL-GAG ndhB-trnL-GAG 113445 114011 0 567 IRa 0.011441 23 51 2 120 no 0.615385 10 0.800000 0.011696 1.000000 52.100000 trnL-GAG tRNA trnL-GAG trnL-GAG 114012 114092 1 81 IRa 0.001899 1 0 10 39 no 0.076923 2 0.500000 0.001899 1.000000 23.300000 IGS_128 igs trnL-GAG|ycf2 trnL-GAG-ycf2 114093 114748 0 656 IRa 0.008992 19 362 91 13 no 0.846154 12 0.916667 0.009640 1.000000 54.400000 ycf2 gene ycf2 ycf2 114749 121510 -1 6762 IRa 0.012104 268 84 32 25 no 0.846154 12 0.916667 0.012122 1.000000 48.400000 IGS_129 igs ycf2|trnM-CAU ycf2-trnM-CAU 121511 121578 0 68 IRa 0.007919 2 0 98 155 no 0.076923 3 0.333333 0.007919 1.000000 34.800000 trnM-CAU tRNA trnM-CAU trnM-CAU 121579 121652 1 74 IRa 0.000000 0 0 42 81 no 0.000000 1 0.000000 0.000000 1.000000 21.900000 IGS_130 igs trnM-CAU|rpl23 trnM-CAU-rpl23 121653 121817 0 165 IRa 0.007148 6 0 116 26 no 0.384615 7 0.714286 0.007148 1.000000 35.700000 rpl23 gene rpl23 rpl23 121818 122087 1 270 IRa 0.008737 9 0 59 9 no 0.384615 8 0.625000 0.008737 1.000000 34.700000 IGS_131 igs rpl23|rpl2 rpl23-rpl2 122088 122105 0 18 IRa 0.015670 1 0 27 64 no 0.000000 2 0.000000 NA 1.000000 34.800000 rpl2 gene rpl2 rpl2 122106 123600 1 1495 IRa 0.006689 40 5 8 9 no 0.846154 12 0.916667 0.006693 1.000000 48.200000 IGS_132 igs rpl2|trnH-GUG rpl2-trnH-GUG 123601 123643 0 43 IRa 0.066190 8 0 94 96 no 0.384615 8 0.625000 0.066190 1.000000 68.000000 trnH-GUG tRNA trnH-GUG trnH-GUG 123644 123718 -1 75 IRa 0.000000 0 0 4 21 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_133 igs trnH-GUG|rps19 trnH-GUG-rps19 123719 123842 0 124 IRa 0.013824 5 2 79 146 no 0.307692 8 0.500000 0.012652 1.000000 43.700000 rps19 gene rps19 rps19 123843 124121 1 279 IRa 0.005698 5 1 22 18 no 0.307692 7 0.571429 0.005700 1.000000 31.100000 IGS_134 igs rps19|rpl22 rps19-rpl22 124122 124302 0 181 IRa 0.063623 34 124 54 0 no 0.615385 10 0.800000 0.058064 0.784530 62.600000 rpl22 gene rpl22 rpl22 124303 124482 1 180 IRa 0.013333 4 180 0 0 no 0.076923 4 0.250000 0.017477 0.000000 16.500000 IGS_135 igs rpl22|psbA rpl22-psbA 124483 110 0 110 LSC 0.167295 47 41 5 41 no 0.846154 12 0.916667 0.097414 0.772727 67.600000