primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnK-UUU-rps16_p1 trnK-UUU-rps16 1 TCCCTCGCTTCATCCAAATG AGGAACTGTTCGGGATCTTT 20 20 50.0 45.0 58.0 56.5 0.0 13.9 1.591763 5018 5733 835-842 1.000000 70.4 trnK-UUU-rps16_p2 trnK-UUU-rps16 2 AAAGCCGAGTACTCTACCGT AGGAACTGTTCGGGATCTTT 20 20 50.0 45.0 58.2 56.5 20.3 13.9 1.717497 5018 5733 791-798 1.000000 69.6 trnK-UUU-rps16_p3 trnK-UUU-rps16 3 AAGCCGAGTACTCTACCGTT AGGAACTGTTCGGGATCTTT 20 20 50.0 45.0 58.2 56.5 20.3 13.9 1.717497 5018 5733 790-797 1.000000 69.6 trnK-UUU-rps16_p4 trnK-UUU-rps16 4 CCCTCGCTTCATCCAAATGT AGGAACTGTTCGGGATCTTT 20 20 50.0 45.0 58.2 56.5 0.0 13.9 1.793898 5018 5733 834-841 1.000000 68.8 trnK-UUU-rps16_p5 trnK-UUU-rps16 5 TCCTAGCCGCACTTAAAAGC AGGAACTGTTCGGGATCTTT 20 20 50.0 45.0 58.3 56.5 0.0 13.9 1.814915 5018 5733 806-813 1.000000 68.7 rps16-trnQ-UUG_p1 rps16-trnQ-UUG 1 TGCTTTCTACCACAGCGTTT AAATATAGATGGGGCGTGGC 20 20 45.0 50.0 58.0 57.8 0.0 0.0 0.238579 6824 8070 857-1366 1.000000 82.6 rps16-trnQ-UUG_p2 rps16-trnQ-UUG 2 TTGCTTTCTACCACAGCGTT AAATATAGATGGGGCGTGGC 20 20 45.0 50.0 58.0 57.8 0.0 0.0 0.238579 6824 8070 858-1367 1.000000 82.6 rps16-trnQ-UUG_p3 rps16-trnQ-UUG 3 AAGTCGCACGTTGCTTTCTA AAATATAGATGGGGCGTGGC 20 20 45.0 50.0 58.1 57.8 8.1 0.0 0.339697 6824 8070 868-1377 1.000000 81.8 rps16-trnQ-UUG_p4 rps16-trnQ-UUG 4 CGGATCGTGTCCTTCAAGTC AAATATAGATGGGGCGTGGC 20 20 55.0 50.0 58.4 57.8 7.8 0.0 0.570225 6824 8070 883-1392 1.000000 80.0 rps16-trnQ-UUG_p5 rps16-trnQ-UUG 5 GGATCGTGTCCTTCAAGTCG AAATATAGATGGGGCGTGGC 20 20 55.0 50.0 58.4 57.8 2.9 0.0 0.570225 6824 8070 882-1391 1.000000 80.0 atpF-atpH_p1 atpF-atpH 1 ATTAAACCCGAAACTCCCGG GCCTGGTTGTAGCATTAGCA 20 20 50.0 50.0 57.9 58.2 0.0 0.0 0.368120 13807 14104 413-479 1.000000 80.1 atpF-atpH_p2 atpF-atpH 2 CCAGTGGCCTAAAGAAACGA GCCTGGTTGTAGCATTAGCA 20 20 50.0 50.0 57.8 58.2 3.3 0.0 0.428719 13807 14104 386-452 1.000000 79.8 atpF-atpH_p3 atpF-atpH 3 ATTAAACCCGAAACTCCCGG TGGCCTGGTTGTAGCATTAG 20 20 50.0 50.0 57.9 57.6 0.0 3.3 0.536681 13807 14104 415-481 1.000000 78.7 atpF-atpH_p4 atpF-atpH 4 ATTAAACCCGAAACTCCCGG TGAGGCGGAGGGAAAAATAC 20 20 50.0 50.0 57.9 57.6 0.0 0.0 0.531623 13807 14104 484-550 1.000000 78.3 atpF-atpH_p5 atpF-atpH 5 CCAGTGGCCTAAAGAAACGA TGAGGCGGAGGGAAAAATAC 20 20 50.0 50.0 57.8 57.6 3.3 0.0 0.592222 13807 14104 457-523 1.000000 78.0 rpoB-trnC-GCA_p1 rpoB-trnC-GCA 1 CCACGAACCTACAAAAGCCT CCGGATTTGAACTGGGGAAA 20 20 50.0 50.0 58.1 58.1 0.0 0.0 0.189918 27888 29105 1122-1372 1.000000 83.7 rpoB-trnC-GCA_p2 rpoB-trnC-GCA 2 TCCACGAACCTACAAAAGCC CCGGATTTGAACTGGGGAAA 20 20 50.0 50.0 58.1 58.1 0.0 0.0 0.195241 27888 29105 1123-1373 1.000000 83.7 rpoB-trnC-GCA_p3 rpoB-trnC-GCA 3 CCACGAACCTACAAAAGCCT TTATTGATCAGGCGACACCC 20 20 50.0 50.0 58.1 57.7 0.0 0.0 0.433374 27888 29105 1140-1390 1.000000 81.8 rpoB-trnC-GCA_p4 rpoB-trnC-GCA 4 TCCACGAACCTACAAAAGCC TTATTGATCAGGCGACACCC 20 20 50.0 50.0 58.1 57.7 0.0 0.0 0.438696 27888 29105 1141-1391 1.000000 81.7 rpoB-trnC-GCA_p5 rpoB-trnC-GCA 5 CCACGAACCTACAAAAGCCT AAAAGGATTTGCAGTCCCCC 20 20 50.0 50.0 58.1 58.4 0.0 14.6 0.463281 27888 29105 1104-1354 1.000000 81.6 trnE-UUC-trnT-GGU_p1 trnE-UUC-trnT-GGU 1 CGTTGCCTCCTTGAAAGAGA TACCGCTGAGTTAAAAGGGC 20 20 50.0 50.0 57.8 57.9 0.0 0.0 0.273369 32351 33120 824-854 1.000000 82.4 trnE-UUC-trnT-GGU_p2 trnE-UUC-trnT-GGU 2 GTGTAGTACCCTACCCCCAG TACCGCTGAGTTAAAAGGGC 20 20 60.0 50.0 58.2 57.9 0.0 0.0 0.317890 32351 33120 859-889 1.000000 81.8 trnE-UUC-trnT-GGU_p3 trnE-UUC-trnT-GGU 3 AGTGTAGTACCCTACCCCCA TACCGCTGAGTTAAAAGGGC 20 20 55.0 50.0 58.6 57.9 0.0 0.0 0.706875 32351 33120 860-890 1.000000 78.7 trnE-UUC-trnT-GGU_p4 trnE-UUC-trnT-GGU 4 CGTTGCCTCCTTGAAAGAGA TGACTTACGCCTTACCATGG 20 20 50.0 50.0 57.8 57.3 0.0 11.2 0.853834 32351 33120 852-882 1.000000 77.6 trnE-UUC-trnT-GGU_p5 trnE-UUC-trnT-GGU 5 CGTTGCCTCCTTGAAAGAGA GCCTTACCATGGCGTTACTC 20 20 50.0 55.0 57.8 58.7 0.0 13.0 0.873105 32351 33120 844-874 1.000000 77.5 ycf3-trnS-GGA_p1 ycf3-trnS-GGA 1 CATTTATCCGCGATCTAGGCA CCCTCGGTAAACAAAAGCCT 21 20 47.6 50.0 58.0 58.1 8.2 0.0 1.134847 46337 47161 906-921 1.000000 73.3 ycf3-trnS-GGA_p2 ycf3-trnS-GGA 2 CATTTATCCGCGATCTAGGCA ACGGAAAGAGAGGGATTCGA 21 20 47.6 50.0 58.0 58.2 8.2 0.0 1.191833 46337 47161 927-942 1.000000 72.8 ycf3-trnS-GGA_p3 ycf3-trnS-GGA 3 CATTTATCCGCGATCTAGGCA TTCCAATGCTACGCCTTCAA 21 20 47.6 45.0 58.0 57.8 8.2 0.0 1.233148 46337 47161 877-892 1.000000 72.6 ycf3-trnS-GGA_p4 ycf3-trnS-GGA 4 CATTTATCCGCGATCTAGGCA AGTTCCAATGCTACGCCTTC 21 20 47.6 50.0 58.0 58.3 8.2 0.0 1.301418 46337 47161 879-894 1.000000 72.0 ycf3-trnS-GGA_p5 ycf3-trnS-GGA 5 CATTTATCCGCGATCTAGGCA ACCCTCGGTAAACAAAAGCC 21 20 47.6 50.0 58.0 58.4 8.2 0.0 1.427808 46337 47161 907-922 1.000000 70.9 accD-psaI_p1 accD-psaI 1 GCTCCACGCTTTCTTTCCTT AAAGAAGCCATTGCCATTGC 20 20 50.0 45.0 58.8 57.9 0.0 0.0 0.864190 60865 61305 556-567 1.000000 76.5 accD-psaI_p2 accD-psaI 2 GCTCCACGCTTTCTTTCCTT TTGCCATTGCCGGAAATACT 20 20 50.0 45.0 58.8 58.2 0.0 7.5 0.914646 60865 61305 546-557 1.000000 76.2 accD-psaI_p3 accD-psaI 3 GCTCCACGCTTTCTTTCCT AAAGAAGCCATTGCCATTGC 19 20 52.6 45.0 58.1 57.9 0.0 0.0 1.169454 60865 61305 556-567 1.000000 74.1 accD-psaI_p4 accD-psaI 4 TCCACGCTTTCTTTCCTTTGA AAAGAAGCCATTGCCATTGC 21 20 42.9 45.0 58.1 57.9 0.0 0.0 1.177813 60865 61305 554-565 1.000000 74.0 accD-psaI_p5 accD-psaI 5 GAGTTATTTCAGCTCCACGC AAAGAAGCCATTGCCATTGC 20 20 50.0 45.0 56.9 57.9 0.0 0.0 1.199152 60865 61305 567-578 1.000000 73.8 petA-psbJ_p1 petA-psbJ 1 CTTACGTGTCCAAGGCCTTT GCTGGTATTCTTGTGATCGGT 20 21 50.0 47.6 58.1 58.1 17.6 0.0 1.201437 64515 65483 1159-1178 1.000000 74.8 petA-psbJ_p2 petA-psbJ 2 GGCCTTTTGTTCTTCTTGGC GCTGGTATTCTTGTGATCGGT 20 21 50.0 47.6 57.8 58.1 0.0 0.0 1.248500 64515 65483 1146-1165 1.000000 74.5 petA-psbJ_p3 petA-psbJ 3 CTTACGTGTCCAAGGCCTTT AGCTGGTATTCTTGTGATCGG 20 21 50.0 47.6 58.1 57.8 17.6 0.0 1.293037 64515 65483 1160-1179 1.000000 74.0 petA-psbJ_p4 petA-psbJ 4 GGCCTTTTGTTCTTCTTGGC AGCTGGTATTCTTGTGATCGG 20 21 50.0 47.6 57.8 57.8 0.0 0.0 1.340100 64515 65483 1147-1166 1.000000 73.7 petA-psbJ_p5 petA-psbJ 5 GATCCCTTACGTGTCCAAGG GCTGGTATTCTTGTGATCGGT 20 21 55.0 47.6 57.7 58.1 7.7 0.0 1.404770 64515 65483 1164-1183 1.000000 73.1 rpl20-rps12_p1 rpl20-rps12 1 TCCGAGCTATATTTCCCCGT CAGCGTCGAGGAACATGTAC 20 20 50.0 55.0 58.0 58.7 0.0 9.8 0.736204 70178 70963 828-850 1.000000 77.7 rpl20-rps12_p2 rpl20-rps12 2 TCCGAGCTATATTTCCCCGT AGCGTCGAGGAACATGTACT 20 20 50.0 50.0 58.0 58.8 0.0 9.8 0.830587 70178 70963 827-849 1.000000 76.9 rpl20-rps12_p3 rpl20-rps12 3 TCCGAGCTATATTTCCCCGT TCAGCGTCGAGGAACATGTA 20 20 50.0 50.0 58.0 58.8 0.0 9.8 0.834928 70178 70963 829-851 1.000000 76.9 rpl20-rps12_p4 rpl20-rps12 4 TCCGAGCTATATTTCCCCGT GCGTCGAGGAACATGTACTA 20 20 50.0 50.0 58.0 57.2 0.0 9.8 0.843756 70178 70963 826-848 1.000000 76.8 rpl20-rps12_p5 rpl20-rps12 5 TTGAATGAGCCCCTCGAAAG CAGCGTCGAGGAACATGTAC 20 20 50.0 55.0 57.9 58.7 0.0 9.8 0.844694 70178 70963 882-904 1.000000 76.6 ycf2_p1 ycf2 1 TACCTAGCGACAAACTCCCA GTTCCAGCTCCGTATGAAGG 20 20 50.0 55.0 58.1 58.1 0.0 0.0 0.131188 92148 92267 178-268 1.000000 87.3 ycf2_p2 ycf2 2 TACCTAGCGACAAACTCCCA CAGCTCCGTATGAAGGTCAC 20 20 50.0 55.0 58.1 58.1 0.0 0.0 0.144618 92148 92267 174-264 1.000000 87.3 ycf2_p3 ycf2 3 CGACAAACTCCCATGTTCCT GTTCCAGCTCCGTATGAAGG 20 20 50.0 55.0 57.8 58.1 0.0 0.0 0.243679 92148 92267 171-261 1.000000 86.6 ycf2_p4 ycf2 4 CGACAAACTCCCATGTTCCT CAGCTCCGTATGAAGGTCAC 20 20 50.0 55.0 57.8 58.1 0.0 0.0 0.257109 92148 92267 167-257 1.000000 86.6 ycf2_p5 ycf2 5 TACCTAGCGACAAACTCCCA TAGCAGTTCCAGCTCCGTAT 20 20 50.0 50.0 58.1 58.2 0.0 0.0 0.295851 92148 92267 183-273 1.000000 85.9 ycf1-ndhF_p1 ycf1-ndhF 1 ACCGAATTGGAATTCCTGTCT GTGGGCGCATCTCTTCTTAT 21 20 42.9 50.0 57.3 57.8 24.7 10.8 1.967806 111835 111873 142-180 1.000000 72.4 ycf1-ndhF_p2 ycf1-ndhF 2 ACCGAATTGGAATTCCTGTCT TGGGCGCATCTCTTCTTATC 21 20 42.9 50.0 57.3 57.5 24.7 10.8 2.254353 111835 111873 141-179 1.000000 70.1 ycf1-ndhF_p3 ycf1-ndhF 3 ACCGAATTGGAATTCCTGTC GTGGGCGCATCTCTTCTTAT 20 20 45.0 50.0 55.7 57.8 24.7 10.8 2.521665 111835 111873 142-180 1.000000 68.0 ycf1-ndhF_p4 ycf1-ndhF 4 ACCGAATTGGAATTCCTGTCT AGTGGGCGCATCTCTTCTTA 21 20 42.9 50.0 57.3 58.8 24.7 10.8 2.525973 111835 111873 143-181 1.000000 67.9 ycf1-ndhF_p5 ycf1-ndhF 5 ACCGAATTGGAATTCCTGTCT TAGTGGGCGCATCTCTTCTT 21 20 42.9 50.0 57.3 58.8 24.7 10.8 2.525973 111835 111873 144-182 1.000000 67.9 ndhF-rpl32_p1 ndhF-rpl32 1 TGCCGACGGAAAAAGAAGAA TCCAAATATTTTTACGAATACGCT 20 24 45.0 29.2 58.0 55.3 20.5 0.0 6.763201 114121 115176 1181-1221 1.000000 45.2 ndhF-rpl32_p2 ndhF-rpl32 2 AAAAGAAGAAGTCCCGCTCC TCCAAATATTTTTACGAATACGCT 20 24 50.0 29.2 57.8 55.3 0.0 0.0 6.906030 114121 115176 1171-1211 1.000000 45.2 ndhF-rpl32_p3 ndhF-rpl32 3 GTTGCCGACGGAAAAAGAAG TCCAAATATTTTTACGAATACGCT 20 24 50.0 29.2 58.0 55.3 20.5 0.0 6.751912 114121 115176 1183-1223 0.909091 41.0 ndhF-rpl32_p4 ndhF-rpl32 4 TTGCCGACGGAAAAAGAAGA TCCAAATATTTTTACGAATACGCT 20 24 45.0 29.2 58.0 55.3 20.5 0.0 6.763201 114121 115176 1182-1222 0.909091 41.0 ndhF-rpl32_p5 ndhF-rpl32 5 TTTGTTGCCGACGGAAAAAG TCCAAATATTTTTACGAATACGCT 20 24 45.0 29.2 57.8 55.3 20.5 0.0 6.915793 114121 115176 1186-1226 0.909091 41.0 rpl32-trnL-UAG_p1 rpl32-trnL-UAG 1 AGGGATATTGGGCAGCCTTA AGCGTGTCTACCGATTTCAC 20 20 50.0 50.0 58.2 58.0 12.4 0.0 0.174643 115339 116314 1011-1100 1.000000 84.6 rpl32-trnL-UAG_p2 rpl32-trnL-UAG 2 AGGGATATTGGGCAGCCTTA CAGCGTGTCTACCGATTTCA 20 20 50.0 50.0 58.2 58.0 12.4 0.0 0.176014 115339 116314 1012-1101 1.000000 84.6 rpl32-trnL-UAG_p3 rpl32-trnL-UAG 3 AGGGATATTGGGCAGCCTTA CTCGCACTGCTTCCTAAGAG 20 20 50.0 55.0 58.2 58.1 12.4 0.0 0.246895 115339 116314 1032-1121 1.000000 84.0 rpl32-trnL-UAG_p4 rpl32-trnL-UAG 4 AGGGATATTGGGCAGCCTTA CTCTCGCACTGCTTCCTAAG 20 20 50.0 55.0 58.2 58.1 12.4 0.0 0.246895 115339 116314 1034-1123 1.000000 84.0 rpl32-trnL-UAG_p5 rpl32-trnL-UAG 5 AGGGATATTGGGCAGCCTTA TCCTAAGAGCAGCGTGTCTA 20 20 50.0 50.0 58.2 57.9 12.4 0.0 0.291090 115339 116314 1021-1110 1.000000 83.6 ccsA_p1 ccsA 1 GTGAAATCGGTAGACACGCT TGGACCGCGAGAGTTATTTG 20 20 50.0 50.0 58.0 58.0 0.0 8.2 0.012413 116452 117465 1498-1505 1.000000 81.9 ccsA_p2 ccsA 2 AACCGACAAAAGCCTGGAAT TGGACCGCGAGAGTTATTTG 20 20 45.0 50.0 58.0 58.0 0.0 8.2 0.009206 116452 117465 1918-1925 1.000000 81.8 ccsA_p3 ccsA 3 ACCGACAAAAGCCTGGAATT TGGACCGCGAGAGTTATTTG 20 20 45.0 50.0 58.0 58.0 0.0 8.2 0.009206 116452 117465 1917-1924 1.000000 81.8 ccsA_p4 ccsA 4 AACCGACAAAAGCCTGGAAT GGACCGCGAGAGTTATTTGT 20 20 45.0 50.0 58.0 58.0 0.0 8.2 0.010594 116452 117465 1917-1924 1.000000 81.8 ccsA_p5 ccsA 5 ACCGACAAAAGCCTGGAATT GGACCGCGAGAGTTATTTGT 20 20 45.0 50.0 58.0 58.0 0.0 8.2 0.010594 116452 117465 1916-1923 1.000000 81.8 ccsA-ndhD_p1 ccsA-ndhD 1 GGCGTCTATGGGCTTTCTTA CAGTTGACAAGGTCGAGGTT 20 20 50.0 50.0 57.4 57.8 0.0 0.0 0.855322 117466 117688 373-380 1.000000 77.6 ccsA-ndhD_p2 ccsA-ndhD 2 GGCGTCTATGGGCTTTCTTA AGTTGACAAGGTCGAGGTTC 20 20 50.0 50.0 57.4 57.5 0.0 0.0 1.142870 117466 117688 372-379 1.000000 75.4 ccsA-ndhD_p3 ccsA-ndhD 3 GGCGTCTATGGGCTTTCTTA GTTGACAAGGTCGAGGTTCT 20 20 50.0 50.0 57.4 57.5 0.0 0.0 1.142870 117466 117688 371-378 1.000000 75.4 ccsA-ndhD_p4 ccsA-ndhD 4 GGCGTCTATGGGCTTTCTTA TCAGTTGACAAGGTCGAGGT 20 20 50.0 50.0 57.4 58.6 0.0 0.0 1.204824 117466 117688 374-381 1.000000 74.8 ccsA-ndhD_p5 ccsA-ndhD 5 GGCGTCTATGGGCTTTCTTA ATCAGTTGACAAGGTCGAGG 20 20 50.0 50.0 57.4 57.2 0.0 0.0 1.365995 117466 117688 375-382 1.000000 73.5 ndhA_p1 ndhA 1 TGTTTAAGACAAGTCGTGAAGA CACCCGGTTTTATCAATTTGCA 22 22 36.4 40.9 55.7 58.1 0.0 0.0 6.423329 121847 124009 2322-2332 1.000000 41.2 ndhA_p2 ndhA 2 TGTTTAAGACAAGTCGTGAAGA ACCCGGTTTTATCAATTTGCA 22 21 36.4 38.1 55.7 56.7 0.0 0.0 6.659529 121847 124009 2321-2331 1.000000 41.2 ndhA_p3 ndhA 3 TTGTTTAAGACAAGTCGTGAAGA CACCCGGTTTTATCAATTTGCA 23 22 34.8 40.9 56.4 58.1 0.0 0.0 6.708456 121847 124009 2323-2333 1.000000 41.2 ndhA_p4 ndhA 4 TGTTTAAGACAAGTCGTGAAGA ACCACCCGGTTTTATCAATTTG 22 22 36.4 40.9 55.7 57.5 0.0 0.0 6.871654 121847 124009 2324-2334 1.000000 41.2 ndhA_p5 ndhA 5 AGACAAGTCGTGAAGATAGA CACCCGGTTTTATCAATTTGCA 20 22 40.0 40.9 53.2 58.1 0.0 0.0 6.907836 121847 124009 2316-2326 1.000000 41.2