feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 4 76 -1 73 LSC 0.000000 0 0 300 204 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_001 igs trnH|psbA trnH-psbA 77 347 0 271 LSC 0.005535 3 0 300 300 no 0.250000 2 0.500000 0.005535 1.000000 42.300000 psbA gene psbA psbA 348 1409 -1 1062 LSC 0.000471 1 0 64 300 no 0.250000 2 0.500000 0.000471 1.000000 34.800000 IGS_002 igs psbA|trnK psbA-trnK 1410 1683 0 274 LSC 0.000000 0 0 300 155 no 0.000000 1 0.000000 0.000000 1.000000 30.400000 trnK_part2 tRNA trnK trnK 1684 1718 -1 35 LSC 0.000000 0 0 300 120 no 0.000000 1 0.000000 0.000000 1.000000 27.700000 IGS_003 igs trnK|matK trnK-matK 1719 2036 0 318 LSC 0.001572 1 0 300 300 no 0.250000 2 0.500000 0.001572 1.000000 39.900000 matK gene matK matK 2037 3551 -1 1515 LSC 0.001650 5 0 197 141 no 1.000000 4 1.000000 0.001650 1.000000 55.400000 IGS_004 igs matK|trnK matK-trnK 3552 4308 0 757 LSC 0.002642 4 3 300 74 no 1.000000 4 1.000000 0.002648 0.998679 51.600000 trnK_part1 tRNA trnK trnK 4309 4345 -1 37 LSC 0.000000 0 0 253 37 no 0.000000 1 0.000000 0.000000 1.000000 21.500000 IGS_005 igs trnK|rps16 trnK-rps16 4346 4983 0 638 LSC 0.003396 4 0 290 42 no 0.500000 3 0.666667 0.003396 1.000000 39.800000 rps16 gene rps16 rps16 4984 6120 -1 1137 LSC 0.001612 3 1 49 227 no 0.500000 3 0.666667 0.001613 1.000000 39.200000 IGS_006 igs rps16|trnQ rps16-trnQ 6121 6575 0 455 LSC 0.002564 2 4 67 204 no 0.500000 3 0.666667 0.001841 1.000000 39.100000 trnQ tRNA trnQ trnQ 6576 6647 -1 72 LSC 0.000000 0 0 139 132 no 0.000000 1 0.000000 0.000000 1.000000 28.600000 IGS_007 igs trnQ|psbK trnQ-psbK 6648 6986 0 339 LSC 0.004425 3 0 211 5 no 0.500000 3 0.666667 0.004425 1.000000 32.400000 psbK gene psbK psbK 6987 7172 1 186 LSC 0.002688 1 0 136 36 no 0.250000 2 0.500000 0.002688 1.000000 28.000000 IGS_008 igs psbK|psbI psbK-psbI 7173 7568 0 396 LSC 0.011364 8 3 180 300 no 1.000000 4 1.000000 0.010556 1.000000 61.500000 psbI gene psbI psbI 7569 7679 1 111 LSC 0.000000 0 0 32 293 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_009 igs psbI|trnS psbI-trnS 7680 7770 0 91 LSC 0.000000 0 0 143 202 no 0.000000 1 0.000000 0.000000 1.000000 29.500000 trnS tRNA trnS trnS 7771 7858 1 88 LSC 0.000000 0 0 234 114 no 0.000000 1 0.000000 0.000000 1.000000 27.300000 IGS_010 igs trnS|trnG trnS-trnG 7859 8530 0 672 LSC 0.003067 4 5 300 193 no 1.000000 4 1.000000 0.003129 0.964286 59.600000 trnG_part1 tRNA trnG trnG 8531 8553 1 23 LSC 0.000000 0 0 258 170 no 0.000000 1 0.000000 0.000000 1.000000 31.500000 IGS_011 igs trnG|trnG trnG-trnG 8554 9274 0 721 LSC 0.000693 1 0 281 90 no 0.250000 2 0.500000 0.000693 1.000000 36.900000 trnG_part2 tRNA trnG trnG 9275 9323 1 49 LSC 0.000000 0 0 300 41 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_012 igs trnG|trnR trnG-trnR 9324 9456 0 133 LSC 0.003759 1 0 300 121 no 0.250000 2 0.500000 0.003759 1.000000 35.100000 trnR tRNA trnR trnR 9457 9528 1 72 LSC 0.000000 0 0 91 49 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_013 igs trnR|atpA trnR-atpA 9529 9831 0 303 LSC 0.005501 3 0 163 300 no 0.500000 3 0.666667 0.005501 1.000000 44.100000 atpA gene atpA atpA 9832 11355 -1 1524 LSC 0.000656 2 0 15 300 no 0.500000 3 0.666667 0.000656 1.000000 35.900000 IGS_014 igs atpA|atpF atpA-atpF 11356 11419 0 64 LSC 0.000000 0 0 300 290 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 atpF gene atpF atpF 11420 12713 -1 1294 LSC 0.002318 6 0 300 159 no 0.500000 3 0.666667 0.002318 1.000000 47.900000 IGS_015 igs atpF|atpH atpF-atpH 12714 13184 0 471 LSC 0.002123 2 0 144 300 no 0.500000 3 0.666667 0.002123 1.000000 44.000000 atpH gene atpH atpH 13185 13430 -1 246 LSC 0.000000 0 0 149 192 no 0.000000 1 0.000000 0.000000 1.000000 29.900000 IGS_016 igs atpH|atpI atpH-atpI 13431 13929 0 499 LSC 0.004008 4 0 300 50 no 0.500000 3 0.666667 0.004008 1.000000 38.800000 atpI gene atpI atpI 13930 14679 -1 750 LSC 0.001333 2 0 64 276 no 0.500000 3 0.666667 0.001333 1.000000 40.100000 IGS_017 igs atpI|rps2 atpI-rps2 14680 14922 0 243 LSC 0.000000 0 0 278 33 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 rps2 gene rps2 rps2 14923 15633 -1 711 LSC 0.000703 1 0 300 201 no 0.250000 2 0.500000 0.000703 1.000000 45.200000 IGS_018 igs rps2|rpoC2 rps2-rpoC2 15634 15850 0 217 LSC 0.003072 1 0 300 19 no 0.000000 2 0.000000 0.003072 1.000000 22.100000 rpoC2 gene rpoC2 rpoC2 15851 19996 -1 4146 LSC 0.001085 8 0 15 300 no 1.000000 4 1.000000 0.001085 1.000000 40.700000 IGS_019 igs rpoC2|rpoC1 rpoC2-rpoC1 19997 20177 0 181 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpoC1 gene rpoC1 rpoC1 20178 22997 -1 2820 LSC 0.000709 4 0 300 300 no 0.500000 3 0.666667 0.000709 1.000000 47.100000 IGS_020 igs rpoC1|rpoB rpoC1-rpoB 22998 23023 0 26 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpoB gene rpoB rpoB 23024 26242 -1 3219 LSC 0.000311 2 0 300 32 no 0.500000 3 0.666667 0.000311 1.000000 33.500000 IGS_021 igs rpoB|trnC rpoB-trnC 26243 27353 0 1111 LSC 0.002853 6 1 300 109 no 0.500000 3 0.666667 0.002853 0.999100 44.600000 trnC tRNA trnC trnC 27354 27424 1 71 LSC 0.000000 0 0 20 38 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_022 igs trnC|petN trnC-petN 27425 28021 0 597 LSC 0.003356 4 8 91 166 no 0.500000 3 0.666667 0.003382 0.998325 45.000000 petN gene petN petN 28022 28111 1 90 LSC 0.000000 0 0 119 76 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_023 igs petN|psbM petN-psbM 28112 28613 0 502 LSC 0.005219 5 59 209 209 no 1.000000 4 1.000000 0.005472 0.954183 64.300000 psbM gene psbM psbM 28614 28718 -1 105 LSC 0.000000 0 0 29 104 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_024 igs psbM|trnD psbM-trnD 28719 29731 0 1013 LSC 0.003458 7 3 134 300 no 0.500000 3 0.666667 0.003463 0.999013 47.200000 trnD tRNA trnD trnD 29732 29805 -1 74 LSC 0.000000 0 0 44 300 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_025 igs trnD|trnY trnD-trnY 29806 30240 0 435 LSC 0.000000 0 0 118 94 no 0.000000 1 0.000000 0.000000 1.000000 28.600000 trnY tRNA trnY trnY 30241 30324 -1 84 LSC 0.000000 0 0 300 10 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_026 igs trnY|trnE trnY-trnE 30325 30383 0 59 LSC 0.016949 2 0 300 165 no 0.250000 2 0.500000 0.016949 1.000000 47.700000 trnE tRNA trnE trnE 30384 30456 -1 73 LSC 0.000000 0 0 31 92 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_027 igs trnE|trnT; trnM trnE-trnT; trnM 30457 31131 0 675 LSC 0.005935 7 54 104 116 no 1.000000 4 1.000000 0.004960 0.991111 60.400000 trnT; trnM tRNA trnT; trnM trnT; trnM 31132 31203 1 72 LSC 0.000000 0 0 300 44 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_028 igs trnT; trnM|psbD trnT; trnM-psbD 31204 32409 0 1206 LSC 0.001658 4 1 300 107 no 1.000000 4 1.000000 0.001659 0.999171 53.000000 psbD gene psbD psbD 32410 33471 1 1062 LSC 0.000471 1 0 182 300 no 0.250000 2 0.500000 0.000471 1.000000 43.700000 psbC gene psbC psbC 33419 34840 1 1422 LSC 0.000352 1 0 300 171 no 0.250000 2 0.500000 0.000352 1.000000 42.800000 IGS_030 igs psbC|psbZ psbC-psbZ 34841 35474 0 634 LSC 0.001840 2 0 300 300 no 0.500000 3 0.666667 0.001840 1.000000 50.600000 psbZ gene psbZ psbZ 35475 35663 1 189 LSC 0.000000 0 0 280 207 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_031 igs psbZ|trnG psbZ-trnG 35664 36086 0 423 LSC 0.003546 3 3 300 300 no 1.000000 4 1.000000 0.003595 1.000000 58.200000 IGS_032 igs trnG|trnfM trnG-trnfM 36158 36300 0 143 LSC 0.000000 0 0 178 300 no 0.000000 1 0.000000 0.000000 1.000000 32.100000 trnfM tRNA trnfM trnfM 36301 36374 -1 74 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_033 igs trnfM|rps14 trnfM-rps14 36375 36527 0 153 LSC 0.000000 0 0 300 191 no 0.000000 1 0.000000 0.000000 1.000000 33.100000 rps14 gene rps14 rps14 36528 36830 -1 303 LSC 0.002200 1 0 300 300 no 0.000000 2 0.000000 0.002200 1.000000 35.200000 IGS_034 igs rps14|psaB rps14-psaB 36831 36958 0 128 LSC 0.000000 0 0 111 300 no 0.000000 1 0.000000 0.000000 1.000000 27.100000 psaB gene psaB psaB 36959 39163 -1 2205 LSC 0.000680 3 0 239 300 no 0.500000 3 0.666667 0.000680 1.000000 48.400000 IGS_035 igs psaB|psaA psaB-psaA 39164 39188 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 39189 41441 -1 2253 LSC 0.000444 2 0 300 300 no 0.250000 2 0.500000 0.000444 1.000000 43.400000 IGS_036 igs psaA|ycf3 psaA-ycf3 41442 42160 0 719 LSC 0.002782 4 1 197 300 no 1.000000 4 1.000000 0.002785 0.998609 60.600000 ycf3 gene ycf3 ycf3 42161 44177 -1 2017 LSC 0.000496 2 0 62 300 no 0.500000 3 0.666667 0.000496 1.000000 38.300000 IGS_037 igs ycf3|trnS ycf3-trnS 44178 44416 0 239 LSC 0.000000 0 0 300 261 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnS tRNA trnS trnS 44417 44503 1 87 LSC 0.000000 0 0 300 174 no 0.000000 1 0.000000 0.000000 1.000000 31.800000 IGS_038 igs trnS|rps4 trnS-rps4 44504 44780 0 277 LSC 0.007850 4 1 300 300 no 0.500000 3 0.666667 0.007850 0.996390 48.800000 rps4 gene rps4 rps4 44781 45386 -1 606 LSC 0.000000 0 0 0 139 no 0.000000 1 0.000000 0.000000 1.000000 25.000000 IGS_039 igs rps4|trnT rps4-trnT 45387 45774 0 388 LSC 0.001289 1 0 300 74 no 0.250000 2 0.500000 0.001289 1.000000 31.700000 trnT tRNA trnT trnT 45775 45847 -1 73 LSC 0.000000 0 0 248 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_040 igs trnT|trnL trnT-trnL 45848 46646 0 799 LSC 0.004589 7 1 300 300 no 0.500000 3 0.666667 0.004593 0.998748 52.700000 trnL_part1 tRNA trnL trnL 46647 46681 1 35 LSC 0.000000 0 0 74 300 no 0.000000 1 0.000000 0.000000 1.000000 24.300000 IGS_041 igs trnL|trnL trnL-trnL 46682 47003 0 322 LSC 0.000000 0 0 109 219 no 0.000000 1 0.000000 0.000000 1.000000 27.400000 trnL_part2 tRNA trnL trnL 47004 47053 1 50 LSC 0.000000 0 0 300 169 no 0.000000 1 0.000000 0.000000 1.000000 31.400000 IGS_042 igs trnL|trnF trnL-trnF 47054 47391 0 338 LSC 0.002959 2 0 300 300 no 0.250000 2 0.500000 0.002959 1.000000 41.300000 trnF tRNA trnF trnF 47392 47464 1 73 LSC 0.000000 0 0 111 300 no 0.000000 1 0.000000 0.000000 1.000000 27.100000 IGS_043 igs trnF|ndhJ trnF-ndhJ 47465 48056 0 592 LSC 0.000000 0 0 184 300 no 0.000000 1 0.000000 0.000000 1.000000 38.600000 ndhJ gene ndhJ ndhJ 48057 48533 -1 477 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.400000 IGS_044 igs ndhJ|ndhK ndhJ-ndhK 48534 48639 0 106 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ndhK gene ndhK ndhK 48640 49317 -1 678 LSC 0.000983 1 0 300 188 no 0.000000 2 0.000000 0.000983 1.000000 39.700000 IGS_045 igs ndhK|ndhC ndhK-ndhC 49318 49371 0 54 LSC 0.000000 0 0 65 134 no 0.000000 1 0.000000 0.000000 1.000000 23.600000 ndhC gene ndhC ndhC 49372 49734 -1 363 LSC 0.001377 1 0 119 120 no 0.250000 2 0.500000 0.001377 1.000000 34.600000 IGS_046 igs ndhC|trnV; trnA ndhC-trnV; trnA 49735 50596 0 862 LSC 0.004254 7 0 228 46 no 0.500000 3 0.666667 0.004254 1.000000 40.800000 trnV; trnA_part2 tRNA trnV; trnA trnV; trnA 50597 50631 -1 35 LSC 0.000000 0 0 75 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_047 igs trnV; trnA|trnV; trnA trnV; trnA-trnV; trnA 50632 51234 0 603 LSC 0.000829 1 0 110 300 no 0.250000 2 0.500000 0.000829 1.000000 38.500000 trnV; trnA_part1 tRNA trnV; trnA trnV; trnA 51235 51273 -1 39 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_048 igs trnV; trnA|trnM; trnT trnV; trnA-trnM; trnT 51274 51457 0 184 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnM; trnT tRNA trnM; trnT trnM; trnT 51458 51530 1 73 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_049 igs trnM; trnT|atpE trnM; trnT-atpE 51531 51670 0 140 LSC 0.000000 0 2 300 300 no 0.500000 3 0.666667 0.000000 0.992857 44.600000 atpE gene atpE atpE 51671 52069 -1 399 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 35.800000 IGS_050 igs atpE|atpB atpE-atpB 52070 52089 0 20 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 atpB gene atpB atpB 52090 53562 -1 1473 LSC 0.001018 3 0 300 218 no 0.500000 3 0.666667 0.001018 1.000000 50.100000 IGS_051 igs atpB|rbcL atpB-rbcL 53563 54337 0 775 LSC 0.001292 2 1 300 300 no 0.500000 3 0.666667 0.001292 0.998710 50.400000 rbcL gene rbcL rbcL 54338 55777 1 1440 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_052 igs rbcL|accD rbcL-accD 55778 56476 0 699 LSC 0.000716 1 2 300 300 no 0.500000 3 0.666667 0.000717 0.998569 50.200000 accD gene accD accD 56477 57940 1 1464 LSC 0.000000 0 0 79 60 no 0.000000 1 0.000000 0.000000 1.000000 29.500000 IGS_053 igs accD|psaI accD-psaI 57941 58581 0 641 LSC 0.008060 10 7 300 274 yes 1.000000 4 1.000000 0.008138 1.000000 65.600000 psaI gene psaI psaI 58582 58695 1 114 LSC 0.000000 0 0 295 160 no 0.000000 1 0.000000 0.000000 1.000000 30.800000 IGS_054 igs psaI|ycf4 psaI-ycf4 58696 59112 0 417 LSC 0.002398 2 1 300 83 no 1.000000 4 1.000000 0.002400 1.000000 48.100000 ycf4 gene ycf4 ycf4 59113 59667 1 555 LSC 0.003003 3 0 100 3 no 0.500000 3 0.666667 0.003003 1.000000 35.700000 IGS_055 igs ycf4|cemA ycf4-cemA 59668 60107 0 440 LSC 0.004545 4 0 300 227 no 0.250000 2 0.500000 0.004545 1.000000 44.500000 cemA gene cemA cemA 60108 60797 1 690 LSC 0.000725 1 0 125 127 no 0.250000 2 0.500000 0.000725 1.000000 39.600000 IGS_056 igs cemA|petA cemA-petA 60798 61027 0 230 LSC 0.004348 2 5 300 47 no 0.500000 3 0.666667 0.004412 1.000000 37.200000 petA gene petA petA 61028 61990 1 963 LSC 0.001211 2 0 28 300 no 0.500000 3 0.666667 0.001211 1.000000 37.300000 IGS_057 igs petA|psbJ petA-psbJ 61991 62915 0 925 LSC 0.001625 3 15 141 164 no 0.500000 3 0.666667 0.001643 0.997838 47.900000 psbJ gene psbJ psbJ 62916 63038 -1 123 LSC 0.000000 0 0 195 41 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_058 igs psbJ|psbL psbJ-psbL 63039 63181 0 143 LSC 0.004662 1 0 300 300 no 0.000000 2 0.000000 0.004662 1.000000 36.700000 psbL gene psbL psbL 63182 63298 -1 117 LSC 0.000000 0 0 101 300 no 0.000000 1 0.000000 0.000000 1.000000 26.300000 IGS_059 igs psbL|psbF psbL-psbF 63299 63319 0 21 LSC 0.000000 0 0 218 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbF gene psbF psbF 63320 63439 -1 120 LSC 0.000000 0 0 239 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_060 igs psbF|psbE psbF-psbE 63440 63448 0 9 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 63449 63700 -1 252 LSC 0.000000 0 0 300 204 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_061 igs psbE|petL psbE-petL 63701 65022 0 1322 LSC 0.002150 5 12 300 300 no 1.000000 4 1.000000 0.001647 0.996974 61.200000 petL gene petL petL 65023 65118 1 96 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_062 igs petL|petG petL-petG 65119 65305 0 187 LSC 0.000000 0 0 300 138 no 0.000000 1 0.000000 0.000000 1.000000 29.100000 petG gene petG petG 65306 65419 1 114 LSC 0.000000 0 0 300 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_063 igs petG|trnW petG-trnW 65420 65551 0 132 LSC 0.003788 1 0 300 149 no 0.250000 2 0.500000 0.003788 1.000000 37.300000 trnW tRNA trnW trnW 65552 65625 -1 74 LSC 0.000000 0 0 107 75 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_064 igs trnW|trnP trnW-trnP 65626 65817 0 192 LSC 0.005208 2 11 181 211 no 0.250000 2 0.500000 0.005525 1.000000 46.500000 trnP tRNA trnP trnP 65818 65891 -1 74 LSC 0.000000 0 0 93 137 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 IGS_065 igs trnP|psaJ trnP-psaJ 65892 66226 0 335 LSC 0.008458 5 18 167 202 no 1.000000 4 1.000000 0.010256 0.994030 59.000000 psaJ gene psaJ psaJ 66227 66361 1 135 LSC 0.000000 0 0 169 67 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_066 igs psaJ|rpl33 psaJ-rpl33 66362 66813 0 452 LSC 0.008500 7 14 300 9 no 1.000000 4 1.000000 0.008295 0.986726 49.700000 rpl33 gene rpl33 rpl33 66814 67014 1 201 LSC 0.002488 1 0 197 117 no 0.250000 2 0.500000 0.002488 1.000000 34.000000 IGS_067 igs rpl33|rps18 rpl33-rps18 67015 67246 0 232 LSC 0.010776 5 1 191 300 no 1.000000 4 1.000000 0.010791 1.000000 59.900000 rps18 gene rps18 rps18 67247 67552 1 306 LSC 0.000000 0 0 72 258 no 0.000000 1 0.000000 0.000000 1.000000 24.300000 IGS_068 igs rps18|rpl20 rps18-rpl20 67553 67846 0 294 LSC 0.001701 1 2 300 300 no 0.500000 3 0.666667 0.001708 1.000000 45.100000 rpl20 gene rpl20 rpl20 67847 68200 -1 354 LSC 0.000000 0 0 35 179 no 0.000000 1 0.000000 0.000000 1.000000 22.500000 IGS_069 igs rpl20|clpP rpl20-clpP 68201 69257 0 1057 LSC 0.001894 4 2 300 300 no 1.000000 4 1.000000 0.001895 0.998108 60.300000 clpP gene clpP clpP 69258 71343 -1 2086 LSC 0.001294 5 40 300 38 no 1.000000 4 1.000000 0.001299 0.985618 48.100000 IGS_070 igs clpP|psbB clpP-psbB 71344 71836 0 493 LSC 0.001014 1 0 300 300 no 0.250000 2 0.500000 0.001014 1.000000 43.200000 psbB gene psbB psbB 71837 73363 1 1527 LSC 0.000000 0 0 300 284 no 0.000000 1 0.000000 0.000000 1.000000 39.900000 IGS_071 igs psbB|psbT psbB-psbT 73364 73542 0 179 LSC 0.000000 0 0 300 105 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 psbT gene psbT psbT 73543 73644 1 102 LSC 0.000000 0 0 300 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_072 igs psbT|psbN psbT-psbN 73645 73709 0 65 LSC 0.010256 1 0 300 174 no 0.000000 2 0.000000 0.010256 1.000000 38.300000 psbN gene psbN psbN 73710 73841 -1 132 LSC 0.000000 0 0 61 42 no 0.000000 1 0.000000 0.000000 1.000000 21.900000 IGS_073 igs psbN|psbH psbN-psbH 73842 73945 0 104 LSC 0.004808 1 0 193 300 no 0.250000 2 0.500000 0.004808 1.000000 41.300000 psbH gene psbH psbH 73946 74167 1 222 LSC 0.000000 0 0 61 300 no 0.000000 1 0.000000 0.000000 1.000000 23.300000 IGS_074 igs psbH|petB psbH-petB 74168 74301 0 134 LSC 0.000000 0 0 283 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 petB gene petB petB 74302 75743 1 1442 LSC 0.000693 2 0 300 300 no 0.500000 3 0.666667 0.000693 1.000000 49.900000 IGS_075 igs petB|petD petB-petD 75744 75939 0 196 LSC 0.000000 0 1 300 300 no 0.250000 2 0.500000 0.000000 1.000000 39.000000 petD gene petD petD 75940 77138 1 1199 LSC 0.000000 0 0 300 46 no 0.000000 1 0.000000 0.000000 1.000000 28.400000 IGS_076 igs petD|rpoA petD-rpoA 77139 77333 0 195 LSC 0.005128 2 1 300 300 no 0.500000 3 0.666667 0.005146 0.994872 47.200000 rpoA gene rpoA rpoA 77334 78317 -1 984 LSC 0.001016 2 0 146 300 no 0.250000 2 0.500000 0.001016 1.000000 41.300000 IGS_077 igs rpoA|rps11 rpoA-rps11 78318 78384 0 67 LSC 0.000000 0 0 282 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps11 gene rps11 rps11 78385 78801 -1 417 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 36.200000 IGS_078 igs rps11|rpl36 rps11-rpl36 78802 78915 0 114 LSC 0.000000 0 0 300 227 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl36 gene rpl36 rpl36 78916 79029 -1 114 LSC 0.000000 0 0 300 113 no 0.000000 1 0.000000 0.000000 1.000000 27.200000 IGS_079 igs rpl36|rps8 rpl36-rps8 79030 79518 0 489 LSC 0.004440 4 2 300 300 no 1.000000 4 1.000000 0.004443 0.997955 59.900000 rps8 gene rps8 rps8 79519 79923 -1 405 LSC 0.000000 0 0 74 300 no 0.000000 1 0.000000 0.000000 1.000000 26.500000 IGS_080 igs rps8|rpl14 rps8-rpl14 79924 80163 0 240 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl14 gene rpl14 rpl14 80164 80532 -1 369 LSC 0.001355 1 0 300 272 no 0.250000 2 0.500000 0.001355 1.000000 40.800000 IGS_081 igs rpl14|rpl16 rpl14-rpl16 80533 80654 0 122 LSC 0.000000 0 0 56 150 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 rpl16 gene rpl16 rpl16 80655 82135 -1 1481 LSC 0.001688 5 5 178 69 no 0.500000 3 0.666667 0.001693 1.000000 41.100000 IGS_082 igs rpl16|rps3 rpl16-rps3 82136 82315 0 180 LSC 0.006481 2 0 33 300 no 0.500000 3 0.666667 0.006481 1.000000 34.900000 rps3 gene rps3 rps3 82316 82972 -1 657 LSC 0.001015 1 0 8 2 no 0.000000 2 0.000000 0.001015 1.000000 25.800000 rpl22 gene rpl22 rpl22 82957 83439 -1 483 LSC 0.003106 3 0 166 48 no 0.500000 3 0.666667 0.003106 1.000000 37.700000 IGS_084 igs rpl22|rps19 rpl22-rps19 83440 83494 0 55 LSC 0.012121 1 0 300 300 no 0.000000 2 0.000000 0.012121 1.000000 41.500000 rps19 gene rps19 rps19 83495 83773 -1 279 LSC 0.000000 0 0 6 300 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_085 igs rps19|rpl2 rps19-rpl2 83774 83827 0 54 IRb 0.000000 0 0 285 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl2 gene rpl2 rpl2 83828 85325 -1 1498 IRb 0.000334 1 0 300 300 no 0.250000 2 0.500000 0.000334 1.000000 44.900000 IGS_086 igs rpl2|rpl23 rpl2-rpl23 85326 85343 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 85344 85625 -1 282 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_087 igs rpl23|trnI rpl23-trnI 85626 85793 0 168 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_088 igs trnI|ycf2 trnI-ycf2 85868 85955 0 88 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 85956 92843 1 6888 IRb 0.000290 4 0 300 300 no 1.000000 4 1.000000 0.000290 1.000000 52.700000 IGS_089 igs ycf2|trnL ycf2-trnL 92844 93749 0 906 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_090 igs trnL|ndhB trnL-ndhB 93831 94412 0 582 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 39.600000 ndhB gene ndhB ndhB 94413 96636 -1 2224 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.500000 IGS_091 igs ndhB|rps7 ndhB-rps7 96637 96953 0 317 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.100000 rps7 gene rps7 rps7 96954 97421 -1 468 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_092 igs rps7|trnV rps7-trnV 97422 100166 0 2745 IRb 0.000364 2 2 300 300 no 0.500000 3 0.666667 0.000365 0.999636 47.100000 trnV tRNA trnV trnV 100167 100238 1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_093 igs trnV|rrn16S trnV-rrn16S 100239 100469 0 231 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 100470 101960 1 1491 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_094 igs rrn16S|trnI rrn16S-trnI 101961 102183 0 223 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 102184 102220 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_095 igs trnI|trnI trnI-trnI 102221 103174 0 954 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 trnI_part2 tRNA trnI trnI 103175 103209 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_096 igs trnI|trnA; trnV trnI-trnA; trnV 103210 103273 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA; trnV_part1 tRNA trnA; trnV trnA; trnV 103274 103311 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_097 igs trnA; trnV|trnA; trnV trnA; trnV-trnA; trnV 103312 104111 0 800 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 trnA; trnV_part2 tRNA trnA; trnV trnA; trnV 104112 104146 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_098 igs trnA; trnV|rrn23S trnA; trnV-rrn23S 104147 104298 0 152 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 104299 107108 1 2810 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_099 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 107109 107206 0 98 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 107207 107309 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_100 igs rrn4.5S|5S ribosomal RNA rrn4.5S-5S ribosomal RNA 107310 107556 0 247 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 5S ribosomal RNA rRNA 5S ribosomal RNA 5S ribosomal RNA 107557 107677 1 121 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_101 igs 5S ribosomal RNA|trnR 5S ribosomal RNA-trnR 107678 107921 0 244 IRb 0.000000 0 2 300 233 no 0.250000 2 0.500000 0.000000 1.000000 39.400000 trnR tRNA trnR trnR 107922 107995 1 74 IRb 0.000000 0 0 300 159 no 0.000000 1 0.000000 0.000000 1.000000 30.700000 IGS_102 igs trnR|trnN trnR-trnN 107996 108627 0 632 IRb 0.000791 1 0 300 300 no 0.250000 2 0.500000 0.000791 1.000000 45.200000 trnN tRNA trnN trnN 108628 108699 -1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_103 igs trnN|ycf1 trnN-ycf1 108700 109019 0 320 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.200000 ycf1 gene ycf1 ycf1 109020 110060 1 1041 IRb 0.001601 3 0 300 0 no 1.000000 4 1.000000 0.001601 1.000000 44.800000 ndhF gene ndhF ndhF 110022 112262 -1 2241 SSC 0.283728 955 208 300 0 yes 1.000000 4 1.000000 0.311866 0.909415 80.900000 IGS_105 igs ndhF|rpl32 ndhF-rpl32 112263 113113 0 851 SSC 0.242353 309 103 1 0 yes 1.000000 4 1.000000 0.275401 0.878966 81.600000 rpl32 gene rpl32 rpl32 113114 113287 1 174 SSC 0.302682 79 13 1 2 no 0.000000 2 0.000000 0.327122 0.925287 58.000000 IGS_106 igs rpl32|trnL rpl32-trnL 113288 114247 0 960 SSC 0.249826 360 101 1 0 yes 1.000000 4 1.000000 0.275172 0.901042 82.200000 IGS_107 igs trnL|ccsA trnL-ccsA 114328 114438 0 111 SSC 0.204204 34 30 1 1 no 0.000000 2 0.000000 0.279835 0.729730 52.500000 ccsA gene ccsA ccsA 114439 115425 1 987 SSC 0.248058 367 260 0 3 yes 0.500000 3 0.666667 0.336712 0.736575 68.200000 IGS_108 igs ccsA|ndhD ccsA-ndhD 115426 115646 0 221 SSC 0.247360 82 39 0 0 no 0.000000 2 0.000000 0.300366 0.823529 55.000000 ndhD gene ndhD ndhD 115647 117170 -1 1524 SSC 0.281715 644 236 2 2 yes 0.500000 3 0.666667 0.333333 0.845144 71.400000 IGS_109 igs ndhD|psaC ndhD-psaC 117171 117312 0 142 SSC 0.250000 53 27 0 0 yes 1.000000 4 1.000000 0.294685 0.830986 73.700000 psaC gene psaC psaC 117313 117558 -1 246 SSC 0.314363 116 39 2 0 no 0.500000 3 0.666667 0.363498 0.865854 65.400000 IGS_110 igs psaC|ndhE psaC-ndhE 117559 117806 0 248 SSC 0.250672 93 25 1 0 yes 0.500000 3 0.666667 0.278699 0.899194 66.500000 ndhE gene ndhE ndhE 117807 118112 -1 306 SSC 0.270697 124 17 0 2 yes 0.500000 3 0.666667 0.286621 0.944444 67.900000 IGS_111 igs ndhE|ndhG ndhE-ndhG 118113 118380 0 268 SSC 0.302239 121 14 1 1 yes 0.500000 3 0.666667 0.315583 0.947761 68.000000 ndhG gene ndhG ndhG 118381 118911 -1 531 SSC 0.263967 211 58 2 3 yes 1.000000 4 1.000000 0.295279 0.892655 80.700000 IGS_112 igs ndhG|ndhI ndhG-ndhI 118912 119272 0 361 SSC 0.237304 128 55 1 0 yes 0.500000 3 0.666667 0.276984 0.847645 66.400000 ndhI gene ndhI ndhI 119273 119755 -1 483 SSC 0.266391 193 90 0 27 yes 0.500000 3 0.666667 0.316549 0.834369 68.400000 IGS_113 igs ndhI|ndhA ndhI-ndhA 119756 119841 0 86 SSC 0.158915 20 37 34 43 no 0.500000 3 0.666667 0.260441 0.569767 60.300000 ndhA gene ndhA ndhA 119842 122032 -1 2191 SSC 0.273087 898 348 2 0 yes 1.000000 4 1.000000 0.324157 0.841168 79.100000 IGS_114 igs ndhA|ndhH ndhA-ndhH 122033 122033 0 1 SSC 0.666667 1 0 0 0 no 0.000000 2 0.000000 NA 1.000000 53.800000 ndhH gene ndhH ndhH 122034 123215 -1 1182 SSC 0.252961 448 244 0 8 yes 0.500000 3 0.666667 0.318087 0.796954 69.900000 IGS_115 igs ndhH|rps15 ndhH-rps15 123216 123317 0 102 SSC 0.261438 40 5 2 0 no 0.000000 2 0.000000 0.274914 0.950980 58.500000 rps15 gene rps15 rps15 123318 123584 -1 267 SSC 0.199750 80 93 3 0 no 0.000000 2 0.000000 0.306513 0.651685 50.200000 IGS_116 igs rps15|ycf1 rps15-ycf1 123585 123918 0 334 SSC 0.219561 110 97 2 10 no 0.000000 2 0.000000 0.309423 0.709581 52.700000 ycf1 gene ycf1 ycf1 123919 129240 -1 5322 SSC 0.201084 1607 766 11 300 yes 1.000000 4 1.000000 0.232655 0.864525 75.700000 IGS_117 igs ycf1|trnN ycf1-trnN 129241 129560 0 320 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.200000 trnN tRNA trnN trnN 129561 129632 1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_118 igs trnN|trnR trnN-trnR 129633 130264 0 632 IRa 0.000791 1 0 300 300 no 0.250000 2 0.500000 0.000791 1.000000 45.200000 trnR tRNA trnR trnR 130265 130338 -1 74 IRa 0.000000 0 0 159 300 no 0.000000 1 0.000000 0.000000 1.000000 30.700000 IGS_119 igs trnR|5S ribosomal RNA trnR-5S ribosomal RNA 130339 130582 0 244 IRa 0.000000 0 0 233 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 5S ribosomal RNA rRNA 5S ribosomal RNA 5S ribosomal RNA 130583 130703 -1 121 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_120 igs 5S ribosomal RNA|rrn4.5S 5S ribosomal RNA-rrn4.5S 130704 130950 0 247 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 130951 131053 -1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_121 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 131054 131151 0 98 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 131152 133961 -1 2810 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_122 igs rrn23S|trnA; trnV rrn23S-trnA; trnV 133962 134113 0 152 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA; trnV_part2 tRNA trnA; trnV trnA; trnV 134114 134148 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_123 igs trnA; trnV|trnA; trnV trnA; trnV-trnA; trnV 134149 134948 0 800 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 trnA; trnV_part1 tRNA trnA; trnV trnA; trnV 134949 134986 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_124 igs trnA; trnV|trnI trnA; trnV-trnI 134987 135050 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 135051 135085 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_125 igs trnI|trnI trnI-trnI 135086 136039 0 954 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 trnI_part1 tRNA trnI trnI 136040 136076 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_126 igs trnI|rrn16S trnI-rrn16S 136077 136299 0 223 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 136300 137790 -1 1491 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_127 igs rrn16S|trnV rrn16S-trnV 137791 138021 0 231 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnV tRNA trnV trnV 138022 138093 -1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_128 igs trnV|rps7 trnV-rps7 138094 140838 0 2745 IRa 0.000364 2 2 300 300 no 0.500000 3 0.666667 0.000365 0.999636 47.100000 rps7 gene rps7 rps7 140839 141306 1 468 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_129 igs rps7|ndhB rps7-ndhB 141307 141623 0 317 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.100000 ndhB gene ndhB ndhB 141624 143847 1 2224 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.500000 IGS_130 igs ndhB|trnL ndhB-trnL 143848 144429 0 582 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 39.600000 IGS_131 igs trnL|ycf2 trnL-ycf2 144511 145416 0 906 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 ycf2 gene ycf2 ycf2 145417 152304 -1 6888 IRa 0.000290 4 0 300 300 no 1.000000 4 1.000000 0.000290 1.000000 52.700000 IGS_132 igs ycf2|trnI ycf2-trnI 152305 152392 0 88 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_133 igs trnI|rpl23 trnI-rpl23 152467 152634 0 168 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 152635 152916 1 282 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_134 igs rpl23|rpl2 rpl23-rpl2 152917 152934 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 152935 154432 1 1498 IRa 0.000334 1 0 300 300 no 0.250000 2 0.500000 0.000334 1.000000 44.900000 IGS_135 igs rpl2|trnH rpl2-trnH 154433 3 0 170 IRa 0.000000 0 0 300 277 no 0.000000 1 0.000000 0.000000 1.000000 33.800000