primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnS(gcu)-trnD(guc)_p1 trnS(gcu)-trnD(guc) 1 GGGTTCGAATCCCTGTTTCT AGACTCGAACTCGCAACTTC 20 20 50.0 50.0 57.5 57.9 17.2 0.0 0.544957 3046 3105 145-153 1.000000 87.4 trnS(gcu)-trnD(guc)_p2 trnS(gcu)-trnD(guc) 2 GGGTTCGAATCCCTGTTTCT GAGACTCGAACTCGCAACTT 20 20 50.0 50.0 57.5 57.9 17.2 4.0 0.544957 3046 3105 146-154 1.000000 87.4 trnS(gcu)-trnD(guc)_p3 trnS(gcu)-trnD(guc) 3 GGGTTCGAATCCCTGTTTCT GCGGTGCTCTAACCAATTGA 20 20 50.0 50.0 57.5 58.6 17.2 7.1 1.042691 3046 3105 113-121 1.000000 83.7 trnS(gcu)-trnD(guc)_p4 trnS(gcu)-trnD(guc) 4 GGGTTCGAATCCCTGTTTCT GACTGACGAGACTCGAACTC 20 20 50.0 55.0 57.5 57.5 17.2 30.6 1.005639 3046 3105 153-161 1.000000 83.5 trnS(gcu)-trnD(guc)_p5 trnS(gcu)-trnD(guc) 5 GGGTTCGAATCCCTGTTTCT GGACTGACGAGACTCGAACT 20 20 50.0 55.0 57.5 58.8 17.2 30.6 1.333241 3046 3105 154-162 1.000000 80.9 rpl20_p1 rpl20 1 AAAAGCTGCAGCAAAACGTT TTAATGTTACAGGAGCGGCC 20 20 40.0 50.0 58.0 58.0 38.2 0.0 0.041432 8174 8518 1276-1276 0.111111 44.1 rpl20_p2 rpl20 2 AAAAAGACAGGCGCAGGTAA TTAATGTTACAGGAGCGGCC 20 20 45.0 50.0 58.0 58.0 10.8 0.0 0.057021 8174 8518 1254-1254 0.111111 44.0 rpl20_p3 rpl20 3 AAAAGCTGCAGCAAAACGTT AGTCTACCATGGACTGCTGT 20 20 40.0 50.0 58.0 58.1 38.2 21.5 0.064575 8174 8518 1213-1213 0.111111 43.9 rpl20_p4 rpl20 4 AAAAAGACAGGCGCAGGTAA AGTCTACCATGGACTGCTGT 20 20 45.0 50.0 58.0 58.1 10.8 21.5 0.080163 8174 8518 1191-1191 0.111111 43.8 rpl20_p5 rpl20 5 CAGTTGATCAAGGGGCTGTT TTAATGTTACAGGAGCGGCC 20 20 50.0 50.0 58.1 58.0 8.8 0.0 0.117540 8174 8518 1689-1689 0.111111 43.5 ycf89_p1 ycf89 1 AAAATGTTGGCCCAACTTGC CATTGCGGAAAATTCCCCAC 20 20 45.0 50.0 58.0 58.0 26.0 6.6 0.042817 9044 10069 2153-2153 0.111111 44.1 ycf89_p2 ycf89 2 AAAATGTTGGCCCAACTTGC TCTCGTACGACTTGCATGTG 20 20 45.0 50.0 58.0 58.0 26.0 15.3 0.056877 9044 10069 1877-1877 0.111111 44.0 ycf89_p3 ycf89 3 AAAATGTTGGCCCAACTTGC TATTGCTCCGTCAGGCTTTC 20 20 45.0 50.0 58.0 58.0 26.0 0.0 0.058241 9044 10069 2176-2176 0.111111 44.0 ycf89_p4 ycf89 4 AAAATGTTGGCCCAACTTGC AGTTGACTTGTCCAACCACC 20 20 45.0 50.0 58.0 57.9 26.0 0.0 0.086848 9044 10069 2359-2359 0.111111 43.7 ycf89_p5 ycf89 5 AAAATGTTGGCCCAACTTGC GTTGACTTGTCCAACCACCT 20 20 45.0 50.0 58.0 57.9 26.0 0.0 0.086848 9044 10069 2358-2358 0.111111 43.7 rns-trnI(gau)_p1 rns-trnI(gau) 1 GACTGGGGTGAAGTCGTAAC CTGGGCCATTCTGGATTTGA 20 20 55.0 50.0 57.9 57.9 0.0 6.7 0.224425 11741 11805 199-202 1.000000 87.0 rns-trnI(gau)_p2 rns-trnI(gau) 2 GGGGTGAAGTCGTAACAAGG CTGGGCCATTCTGGATTTGA 20 20 55.0 50.0 58.2 57.9 0.0 6.7 0.343845 11741 11805 195-198 1.000000 86.1 rns-trnI(gau)_p3 rns-trnI(gau) 3 GTAACCGTACTGGAAGGTGC CTGGGCCATTCTGGATTTGA 20 20 55.0 50.0 58.3 57.9 0.0 6.7 0.430050 11741 11805 176-179 1.000000 85.5 rns-trnI(gau)_p4 rns-trnI(gau) 4 TGACTGGGGTGAAGTCGTAA CTGGGCCATTCTGGATTTGA 20 20 50.0 50.0 58.3 57.9 0.0 6.7 0.441339 11741 11805 200-203 1.000000 85.3 rns-trnI(gau)_p5 rns-trnI(gau) 5 AGGTAACCGTACTGGAAGGT CTGGGCCATTCTGGATTTGA 20 20 50.0 50.0 57.7 57.9 10.2 6.7 0.464166 11741 11805 178-181 1.000000 85.2 ycf35_p1 ycf35 1 CCTCCTGGGAAGATAGCTCA AACCTTCGGAAACAGTTGCT 20 20 55.0 45.0 57.9 57.9 0.0 0.0 0.146882 15637 16014 1115-1115 0.111111 43.3 ycf35_p2 ycf35 2 ACCTCCTGGGAAGATAGCTC AACCTTCGGAAACAGTTGCT 20 20 55.0 45.0 57.9 57.9 0.0 0.0 0.148386 15637 16014 1116-1116 0.111111 43.3 ycf35_p3 ycf35 3 GACCTCCTGGGAAGATAGCT AACCTTCGGAAACAGTTGCT 20 20 55.0 45.0 57.9 57.9 0.0 0.0 0.148386 15637 16014 1117-1117 0.111111 43.3 ycf35_p4 ycf35 4 CCTCCTGGGAAGATAGCTCA TGGAGCCCGTCAACTAGTTA 20 20 55.0 50.0 57.9 58.1 0.0 8.0 0.166613 15637 16014 1655-1655 0.111111 43.1 ycf35_p5 ycf35 5 ACCTCCTGGGAAGATAGCTC TGGAGCCCGTCAACTAGTTA 20 20 55.0 50.0 57.9 58.1 0.0 8.0 0.168117 15637 16014 1656-1656 0.111111 43.1 rps16_p1 rps16 1 TCGTTCCCATTCCAAGCAAA TGGAGCCCGTCAACTAGTTA 20 20 45.0 50.0 58.0 58.1 0.0 8.0 0.084219 16155 16391 912-912 0.111111 43.8 rps16_p2 rps16 2 TTCGTTCCCATTCCAAGCAA TGGAGCCCGTCAACTAGTTA 20 20 45.0 50.0 58.0 58.1 0.0 8.0 0.084219 16155 16391 913-913 0.111111 43.8 rps16_p3 rps16 3 TCGTTCCCATTCCAAGCAAA AAAAGATCGTCCAGGTCAGC 20 20 45.0 50.0 58.0 57.9 0.0 0.0 0.112311 16155 16391 1155-1155 0.111111 43.5 rps16_p4 rps16 4 TTCGTTCCCATTCCAAGCAA AAAAGATCGTCCAGGTCAGC 20 20 45.0 50.0 58.0 57.9 0.0 0.0 0.112311 16155 16391 1156-1156 0.111111 43.5 rps16_p5 rps16 5 GGGCATGATTGTTCCCAGAA TGGAGCCCGTCAACTAGTTA 20 20 50.0 50.0 58.1 58.1 0.0 8.0 0.221209 16155 16391 957-957 0.111111 42.7 syfB_p1 syfB 1 GCTGACCTGGACGATCTTTT ACTTTGGAAACTCGCGATGT 20 20 50.0 45.0 57.9 58.1 0.0 10.4 0.221652 17531 19645 2866-2866 0.111111 42.7 syfB_p2 syfB 2 AGTGAAGATTTGGGCGAGTG ACTTTGGAAACTCGCGATGT 20 20 50.0 45.0 58.2 58.1 0.0 10.4 0.307534 17531 19645 2713-2713 0.111111 42.0 syfB_p3 syfB 3 GCTGACCTGGACGATCTTTT AGGTACTTTGGAAACTCGCG 20 20 50.0 50.0 57.9 58.2 0.0 0.0 0.308599 17531 19645 2870-2870 0.111111 42.0 syfB_p4 syfB 4 GTGAAGATTTGGGCGAGTGA ACTTTGGAAACTCGCGATGT 20 20 50.0 45.0 58.2 58.1 0.0 10.4 0.312636 17531 19645 2712-2712 0.111111 41.9 syfB_p5 syfB 5 TGAAGATTTGGGCGAGTGAC ACTTTGGAAACTCGCGATGT 20 20 50.0 45.0 58.2 58.1 0.0 10.4 0.312636 17531 19645 2711-2711 0.111111 41.9 ccsA_p1 ccsA 1 CCGATTGCTCTACCACTGAG CAATGTGTTCGTGCATGTCC 20 20 55.0 50.0 57.8 58.0 0.0 5.7 0.248145 44818 45756 1785-1870 1.000000 89.7 ccsA_p2 ccsA 2 AAGATTGCTTGTACGCAGCT CAATGTGTTCGTGCATGTCC 20 20 45.0 50.0 58.2 58.0 15.7 5.7 0.218725 44818 45756 1309-1309 0.111111 42.7 ccsA_p3 ccsA 3 AAGATTGCTTGTACGCAGCT CGGTTGTACGCAATGTGTTC 20 20 45.0 50.0 58.2 58.1 15.7 4.3 0.241279 44818 45756 1319-1319 0.111111 42.5 ccsA_p4 ccsA 4 AAGATTGCTTGTACGCAGCT GGTTGTACGCAATGTGTTCG 20 20 45.0 50.0 58.2 58.1 15.7 4.3 0.241279 44818 45756 1318-1318 0.111111 42.5 ccsA_p5 ccsA 5 AAGATTGCTTGTACGCAGCT TGTTCGTGCATGTCCTACTG 20 20 45.0 50.0 58.2 57.9 15.7 5.7 0.265335 44818 45756 1304-1304 0.111111 42.3 ccs1_p1 ccs1 1 CCACTCACGACCCATGTAAG CAGAATCACGACTACGCCAA 20 20 55.0 50.0 58.0 58.0 0.0 0.0 0.019346 47493 48767 2363-2363 0.111111 44.3 ccs1_p2 ccs1 2 CACGACCCATGTAAGATGCA CAGAATCACGACTACGCCAA 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.031965 47493 48767 2358-2358 0.111111 44.2 ccs1_p3 ccs1 3 TACAGGCTCACGGATACCAT CAGAATCACGACTACGCCAA 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.091341 47493 48767 2171-2171 0.111111 43.7 ccs1_p4 ccs1 4 CCATAATGAAACGCCTTCGC CAGAATCACGACTACGCCAA 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.114524 47493 48767 2012-2012 0.111111 43.5 ccs1_p5 ccs1 5 GAAGTGCATACCGATAGCGT CAGAATCACGACTACGCCAA 20 20 50.0 50.0 57.9 58.0 0.0 0.0 0.144865 47493 48767 2249-2249 0.111111 43.3 trnI(gau)-rns_p1 trnI(gau)-rns 1 CTGGGCCATTCTGGATTTGA GACTGGGGTGAAGTCGTAAC 20 20 50.0 55.0 57.9 57.9 6.7 0.0 0.224425 59013 59077 199-202 1.000000 87.0 trnI(gau)-rns_p2 trnI(gau)-rns 2 CTGGGCCATTCTGGATTTGA GGGGTGAAGTCGTAACAAGG 20 20 50.0 55.0 57.9 58.2 6.7 0.0 0.343845 59013 59077 195-198 1.000000 86.1 trnI(gau)-rns_p3 trnI(gau)-rns 3 CTGGGCCATTCTGGATTTGA GTAACCGTACTGGAAGGTGC 20 20 50.0 55.0 57.9 58.3 6.7 0.0 0.430050 59013 59077 176-179 1.000000 85.5 trnI(gau)-rns_p4 trnI(gau)-rns 4 CTGGGCCATTCTGGATTTGA TGACTGGGGTGAAGTCGTAA 20 20 50.0 50.0 57.9 58.3 6.7 0.0 0.441339 59013 59077 200-203 1.000000 85.3 trnI(gau)-rns_p5 trnI(gau)-rns 5 CTGGGCCATTCTGGATTTGA AGGTAACCGTACTGGAAGGT 20 20 50.0 50.0 57.9 57.7 6.7 10.2 0.464166 59013 59077 178-181 1.000000 85.2 ycf89_p1 ycf89 1 CATTGCGGAAAATTCCCCAC TGACGTTGTCCCAACTTCTG 20 20 50.0 50.0 58.0 58.1 6.6 12.8 0.060647 60749 61774 2299-2299 0.111111 44.0 ycf89_p2 ycf89 2 TCTCGTACGACTTGCATGTG TGACGTTGTCCCAACTTCTG 20 20 50.0 50.0 58.0 58.1 15.3 12.8 0.074707 60749 61774 2023-2023 0.111111 43.8 ycf89_p3 ycf89 3 TATTGCTCCGTCAGGCTTTC TGACGTTGTCCCAACTTCTG 20 20 50.0 50.0 58.0 58.1 0.0 12.8 0.076071 60749 61774 2322-2322 0.111111 43.8 ycf89_p4 ycf89 4 AGTTGACTTGTCCAACCACC TGACGTTGTCCCAACTTCTG 20 20 50.0 50.0 57.9 58.1 0.0 12.8 0.104678 60749 61774 2505-2505 0.111111 43.6 ycf89_p5 ycf89 5 GTTGACTTGTCCAACCACCT TGACGTTGTCCCAACTTCTG 20 20 50.0 50.0 57.9 58.1 0.0 12.8 0.104678 60749 61774 2504-2504 0.111111 43.6 ycf89-trnP(ugg)_p1 ycf89-trnP(ugg) 1 TTAATGTTACAGGAGCGGCC TGACGTTGTCCCAACTTCTG 20 20 50.0 50.0 58.0 58.1 0.0 12.8 0.084576 61775 62072 963-963 0.111111 43.8 ycf89-trnP(ugg)_p2 ycf89-trnP(ugg) 2 AGTCTACCATGGACTGCTGT TGACGTTGTCCCAACTTCTG 20 20 50.0 50.0 58.1 58.1 21.5 12.8 0.107719 61775 62072 900-900 0.111111 43.6 ycf89-trnP(ugg)_p3 ycf89-trnP(ugg) 3 TTAATGTTACAGGAGCGGCC GACGTTGTCCCAACTTCTGA 20 20 50.0 50.0 58.0 57.8 0.0 5.7 0.266980 61775 62072 962-962 0.111111 42.3 ycf89-trnP(ugg)_p4 ycf89-trnP(ugg) 4 AGTCTACCATGGACTGCTGT GACGTTGTCCCAACTTCTGA 20 20 50.0 50.0 58.1 57.8 21.5 5.7 0.290122 61775 62072 899-899 0.111111 42.1 ycf89-trnP(ugg)_p5 ycf89-trnP(ugg) 5 TTACCAGGCTGTCCTTCACT TGACGTTGTCCCAACTTCTG 20 20 50.0 50.0 58.3 58.1 14.4 12.8 0.322309 61775 62072 1435-1435 0.111111 41.9 trnP(ugg)-ycf45_p1 trnP(ugg)-ycf45 1 TTAATGTTACAGGAGCGGCC TTTCGCGTCAAGAGTTTCCA 20 20 50.0 45.0 58.0 58.1 0.0 5.8 0.090003 62147 62629 1350-1350 0.111111 43.7 trnP(ugg)-ycf45_p2 trnP(ugg)-ycf45 2 AGTCTACCATGGACTGCTGT TTTCGCGTCAAGAGTTTCCA 20 20 50.0 45.0 58.1 58.1 21.5 5.8 0.113145 62147 62629 1287-1287 0.111111 43.5 trnP(ugg)-ycf45_p3 trnP(ugg)-ycf45 3 TTAATGTTACAGGAGCGGCC CTTGCAGCTCGTACAATTGC 20 20 50.0 50.0 58.0 58.1 0.0 5.1 0.145360 62147 62629 1795-1795 0.111111 43.3 trnP(ugg)-ycf45_p4 trnP(ugg)-ycf45 4 AGTCTACCATGGACTGCTGT CTTGCAGCTCGTACAATTGC 20 20 50.0 50.0 58.1 58.1 21.5 5.1 0.168503 62147 62629 1732-1732 0.111111 43.1 trnP(ugg)-ycf45_p5 trnP(ugg)-ycf45 5 CCAAGCTGAGCTATATCCCG TTTCGCGTCAAGAGTTTCCA 20 20 55.0 45.0 57.6 58.1 7.7 5.8 0.434130 62147 62629 775-775 0.111111 41.0 rpoC2_p1 rpoC2 1 ACACAATGATGGCCGTTCAA GTCGGGCCAAGTATACCAAG 20 20 45.0 55.0 58.4 58.1 11.8 4.4 0.435538 69371 69490 823-823 0.111111 41.0 rpoC2_p2 rpoC2 2 TTGACACAATGATGGCCGTT GTCGGGCCAAGTATACCAAG 20 20 45.0 55.0 58.4 58.1 0.0 4.4 0.435538 69371 69490 826-826 0.111111 41.0 rpoC2_p3 rpoC2 3 ACACAATGATGGCCGTTCAA CTATGGATTTTGTCGGGCCA 20 20 45.0 50.0 58.4 57.9 11.8 4.4 0.436338 69371 69490 834-834 0.111111 41.0 rpoC2_p4 rpoC2 4 TTGACACAATGATGGCCGTT CTATGGATTTTGTCGGGCCA 20 20 45.0 50.0 58.4 57.9 0.0 4.4 0.436338 69371 69490 837-837 0.111111 41.0 rpoC2_p5 rpoC2 5 ACACAATGATGGCCGTTCAA ACTATGGATTTTGTCGGGCC 20 20 45.0 50.0 58.4 57.9 11.8 0.0 0.437786 69371 69490 835-835 0.111111 40.9 rpoB_p1 rpoB 1 TTAGCTGCGCCAGTTGTTTA AGAATTGGCCATGTTCTCGC 20 20 45.0 50.0 58.1 58.9 4.2 21.9 1.016390 77059 77178 1163-1163 0.111111 36.3 rpoB_p2 rpoB 2 TTAGCTGCGCCAGTTGTTTA CCATGTTCTCGCGAATTCATG 20 21 45.0 47.6 58.1 58.0 4.2 25.9 1.136427 77059 77178 1155-1155 0.111111 35.4 rpoB_p3 rpoB 3 CTTTTTAGCTGCGCCAGTTG AGAATTGGCCATGTTCTCGC 20 20 50.0 50.0 58.3 58.9 4.2 21.9 1.211991 77059 77178 1167-1167 0.111111 34.7 rpoB_p4 rpoB 4 TTTCACTTTTTAGCTGCGCC AGAATTGGCCATGTTCTCGC 20 20 45.0 50.0 57.6 58.9 4.2 21.9 1.317647 77059 77178 1172-1172 0.111111 33.9 rpoB_p5 rpoB 5 CTTTTTAGCTGCGCCAGTTG CCATGTTCTCGCGAATTCATG 20 21 50.0 47.6 58.3 58.0 4.2 25.9 1.332028 77059 77178 1159-1159 0.111111 33.8 ycf41_p1 ycf41 1 CGATTTGGATTTCGCGATGG GGTTTCTTTGAGTGGGGTCA 20 20 50.0 50.0 58.0 57.6 10.9 0.0 0.381130 99813 100133 834-860 0.333333 54.3 ycf41_p2 ycf41 2 CGATTTGGATTTCGCGATGG TGGTTTCTTTGAGTGGGGTC 20 20 50.0 50.0 58.0 57.6 10.9 0.0 0.381130 99813 100133 835-861 0.333333 54.3 ycf41_p3 ycf41 3 CGATTTGGATTTCGCGATGG AATTAGCCGGTCAAACTGCT 20 20 50.0 45.0 58.0 57.8 10.9 1.9 0.223181 99813 100133 931-931 0.111111 42.7 ycf41_p4 ycf41 4 CGATTTGGATTTCGCGATGG CAATTAGCCGGTCAAACTGC 20 20 50.0 50.0 58.0 57.7 10.9 1.9 0.285380 99813 100133 932-932 0.111111 42.2 ycf41_p5 ycf41 5 GGATTTCGCGATGGATCACT AATTAGCCGGTCAAACTGCT 20 20 50.0 45.0 58.1 57.8 10.9 1.9 0.329293 99813 100133 925-925 0.111111 41.8