feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 22 96 -1 75 LSC 0.000000 0 0 151 61 no 0.000000 1 0.000000 0.000000 1.000000 23.300000 IGS_001 igs trnH|psbA trnH-psbA 97 564 0 468 LSC 0.007306 17 7 226 168 yes 0.266667 7 0.571429 0.007417 0.985043 49.000000 psbA gene psbA psbA 565 1626 -1 1062 LSC 0.001148 7 0 183 300 no 0.200000 5 0.600000 0.001148 1.000000 43.800000 IGS_002 igs psbA|trnK psbA-trnK 1627 1840 0 214 LSC 0.000623 1 3 300 300 no 0.066667 2 0.500000 0.000632 1.000000 37.600000 trnK_part2 tRNA trnK trnK 1841 1875 -1 35 LSC 0.000000 0 0 300 293 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 matK gene matK matK 2141 3670 -1 1530 LSC 0.002646 20 0 300 90 no 0.200000 5 0.600000 0.002646 1.000000 38.300000 IGS_005 igs matK|trnK matK-trnK 3671 4375 0 705 LSC 0.002621 7 0 11 109 no 0.200000 6 0.500000 0.002621 1.000000 32.000000 trnK_part1 tRNA trnK trnK 4376 4412 -1 37 LSC 0.000000 0 0 135 72 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 IGS_006 igs trnK|rps16 trnK-rps16 4413 5102 0 690 LSC 0.005521 17 2 172 300 no 0.200000 6 0.500000 0.005523 1.000000 47.600000 rps16 gene rps16 rps16 5103 6234 -1 1132 LSC 0.003365 21 10 124 142 no 0.333333 7 0.714286 0.003382 1.000000 45.500000 IGS_007 igs rps16|trnQ rps16-trnQ 6235 7506 0 1272 LSC 0.006725 41 128 300 300 yes 0.266667 7 0.571429 0.006288 1.000000 57.900000 trnQ tRNA trnQ trnQ 7507 7578 -1 72 LSC 0.001852 1 0 181 300 no 0.066667 2 0.500000 0.001852 1.000000 36.100000 IGS_008 igs trnQ|psbK trnQ-psbK 7579 7923 0 345 LSC 0.001159 3 0 253 300 no 0.066667 2 0.500000 0.001159 1.000000 37.500000 psbK gene psbK psbK 7924 8109 1 186 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_009 igs psbK|psbI psbK-psbI 8110 8478 0 369 LSC 0.005416 13 5 300 300 no 0.266667 5 0.800000 0.005285 1.000000 48.700000 psbI gene psbI psbI 8479 8589 1 111 LSC 0.000000 0 0 28 300 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_010 igs psbI|trnS psbI-trnS 8590 8710 0 121 LSC 0.003306 3 0 139 300 no 0.133333 3 0.666667 0.003306 1.000000 36.300000 trnS tRNA trnS trnS 8711 8798 -1 88 LSC 0.000000 0 0 260 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_011 igs trnS|trnG trnS-trnG 8799 9417 0 619 LSC 0.005323 11 18 300 122 no 0.200000 6 0.500000 0.004328 0.970921 45.300000 trnG_part1 tRNA trnG trnG 9418 9440 1 23 LSC 0.000000 0 0 27 99 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 trnG_part2 tRNA trnG trnG 10133 10180 1 48 LSC 0.000000 0 0 15 48 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_014 igs trnG|trnR trnG-trnR 10181 10357 0 177 LSC 0.006134 6 10 63 113 no 0.333333 8 0.625000 0.006306 0.994350 42.600000 trnR tRNA trnR trnR 10358 10429 1 72 LSC 0.000000 0 0 128 41 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_015 igs trnR|atpA trnR-atpA 10430 10560 0 131 LSC 0.003926 3 10 200 300 no 0.200000 5 0.600000 0.004195 1.000000 48.000000 atpA gene atpA atpA 10561 12084 -1 1524 LSC 0.000887 8 0 89 300 no 0.200000 5 0.600000 0.000887 1.000000 36.400000 IGS_016 igs atpA|atpF atpA-atpF 12085 12138 0 54 LSC 0.000000 0 0 300 266 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 atpF gene atpF atpF 12139 13386 -1 1248 LSC 0.001816 11 0 300 156 no 0.200000 6 0.500000 0.001816 1.000000 42.400000 IGS_017 igs atpF|atpH atpF-atpH 13387 13776 0 390 LSC 0.004689 7 1 253 271 no 0.266667 7 0.571429 0.004691 1.000000 45.300000 atpH gene atpH atpH 13777 14022 -1 246 LSC 0.001626 3 0 25 25 no 0.066667 2 0.500000 0.001626 1.000000 24.100000 IGS_018 igs atpH|atpI atpH-atpI 14023 15206 0 1184 LSC 0.006017 30 16 271 168 yes 0.333333 8 0.625000 0.006034 1.000000 51.400000 atpI gene atpI atpI 15207 15950 -1 744 LSC 0.001101 4 0 300 300 no 0.066667 3 0.333333 0.001101 1.000000 42.400000 IGS_019 igs atpI|rps2 atpI-rps2 15951 16176 0 226 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps2 gene rps2 rps2 16177 16887 -1 711 LSC 0.000375 2 0 300 169 no 0.133333 3 0.666667 0.000375 1.000000 40.700000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 16888 17107 0 220 LSC 0.005844 8 1 300 300 no 0.133333 4 0.500000 0.005762 1.000000 44.000000 rpoC2 gene rpoC2 rpoC2 17108 21286 -1 4179 LSC 0.001568 32 0 50 142 no 0.266667 7 0.571429 0.001568 1.000000 30.400000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 21287 21431 0 145 LSC 0.003678 1 0 44 300 no 0.000000 2 0.000000 0.003678 1.000000 24.600000 rpoC1 gene rpoC1 rpoC1 21432 24240 -1 2809 LSC 0.001004 16 1 2 300 no 0.200000 5 0.600000 0.001004 1.000000 27.400000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 24241 24245 0 5 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpoB gene rpoB rpoB 24246 27458 -1 3213 LSC 0.001393 24 0 300 300 no 0.200000 6 0.500000 0.001393 1.000000 41.900000 IGS_023 igs rpoB|trnC rpoB-trnC 27459 28784 0 1326 LSC 0.002471 20 2 300 107 no 0.266667 6 0.666667 0.002473 1.000000 41.200000 trnC tRNA trnC trnC 28785 28856 1 72 LSC 0.000000 0 0 263 35 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_024 igs trnC|petN trnC-petN 28857 29533 0 677 LSC 0.002279 7 15 300 300 no 0.133333 5 0.400000 0.002301 1.000000 47.500000 petN gene petN petN 29534 29623 1 90 LSC 0.001481 1 0 300 224 no 0.066667 2 0.500000 0.001481 1.000000 37.100000 IGS_025 igs petN|psbM petN-psbM 29624 30730 0 1107 LSC 0.001912 15 2 300 300 no 0.266667 5 0.800000 0.001913 0.999097 47.700000 psbM gene psbM psbM 30731 30835 -1 105 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_026 igs psbM|trnD psbM-trnD 30836 31888 0 1053 LSC 0.002659 13 32 300 300 no 0.066667 4 0.250000 0.002699 1.000000 47.700000 trnD tRNA trnD trnD 31889 31962 -1 74 LSC 0.000000 0 0 60 300 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_027 igs trnD|trnY trnD-trnY 31963 32069 0 107 LSC 0.002492 2 0 134 300 no 0.066667 2 0.500000 0.002492 1.000000 33.500000 trnY tRNA trnY trnY 32070 32153 -1 84 LSC 0.000000 0 0 241 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_028 igs trnY|trnE trnY-trnE 32154 32212 0 59 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnE tRNA trnE trnE 32213 32285 -1 73 LSC 0.000000 0 0 300 230 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_029 igs trnE|trnT trnE-trnT 32286 32990 0 705 LSC 0.002452 8 16 300 206 yes 0.200000 6 0.500000 0.002391 1.000000 48.900000 trnT tRNA trnT trnT 32991 33062 1 72 LSC 0.001852 1 0 300 134 no 0.066667 2 0.500000 0.001852 1.000000 32.600000 IGS_030 igs trnT|psbD trnT-psbD 33063 34243 0 1181 LSC 0.003564 20 18 300 300 no 0.133333 5 0.400000 0.003591 1.000000 48.100000 psbD gene psbD psbD 34244 35305 1 1062 LSC 0.000377 3 0 300 300 no 0.133333 3 0.666667 0.000377 1.000000 43.000000 psbC gene psbC psbC 35289 36674 1 1386 LSC 0.000770 5 0 300 89 no 0.066667 3 0.333333 0.000770 1.000000 33.700000 IGS_032 igs psbC|trnS psbC-trnS 36675 36924 0 250 LSC 0.006934 5 13 300 300 no 0.266667 5 0.800000 0.002810 0.948000 48.500000 trnS tRNA trnS trnS 36925 37017 -1 93 LSC 0.000000 0 0 148 300 no 0.000000 1 0.000000 0.000000 1.000000 29.800000 IGS_033 igs trnS|psbZ trnS-psbZ 37018 37382 0 365 LSC 0.001461 4 7 241 282 no 0.066667 2 0.500000 0.001490 1.000000 40.700000 psbZ gene psbZ psbZ 37383 37571 1 189 LSC 0.000000 0 0 300 93 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 IGS_034 igs psbZ|trnG psbZ-trnG 37572 37839 0 268 LSC 0.002274 3 0 300 268 no 0.133333 4 0.500000 0.002274 1.000000 38.700000 IGS_035 igs trnG|trnfM trnG-trnfM 37911 38133 0 223 LSC 0.006064 8 0 245 300 no 0.200000 5 0.600000 0.006064 1.000000 44.700000 trnfM tRNA trnfM trnfM 38134 38207 -1 74 LSC 0.000000 0 0 25 300 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_036 igs trnfM|rps14 trnfM-rps14 38208 38356 0 149 LSC 0.001790 2 0 99 300 no 0.066667 2 0.500000 0.001790 1.000000 29.900000 rps14 gene rps14 rps14 38357 38659 -1 303 LSC 0.002200 5 0 248 165 no 0.133333 3 0.666667 0.002200 1.000000 36.700000 IGS_037 igs rps14|psaB rps14-psaB 38660 38776 0 117 LSC 0.002279 2 0 300 48 no 0.066667 2 0.500000 0.002279 1.000000 26.800000 psaB gene psaB psaB 38777 40981 -1 2205 LSC 0.000890 8 0 300 300 no 0.266667 6 0.666667 0.000890 1.000000 44.400000 IGS_038 igs psaB|psaA psaB-psaA 40982 41006 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 41007 43259 -1 2253 LSC 0.000507 6 0 300 300 no 0.066667 3 0.333333 0.000507 1.000000 40.200000 IGS_039 igs psaA|ycf3 psaA-ycf3 43260 44099 0 840 LSC 0.008236 26 99 300 300 yes 0.266667 7 0.571429 0.006162 0.963095 57.300000 ycf3 gene ycf3 ycf3 44100 46092 -1 1993 LSC 0.000793 11 37 11 300 no 0.200000 5 0.600000 0.000798 1.000000 31.900000 IGS_040 igs ycf3|trnS ycf3-trnS 46093 46961 0 869 LSC 0.002656 12 278 300 20 no 0.333333 7 0.714286 0.002902 1.000000 41.300000 trnS tRNA trnS trnS 46962 47048 1 87 LSC 0.005473 1 0 300 300 no 0.000000 2 0.000000 0.005473 1.000000 37.600000 IGS_041 igs trnS|rps4 trnS-rps4 47049 47391 0 343 LSC 0.000389 1 0 66 54 no 0.066667 2 0.500000 0.000389 1.000000 25.500000 rps4 gene rps4 rps4 47392 47997 -1 606 LSC 0.000912 2 0 300 300 no 0.066667 3 0.333333 0.000912 1.000000 42.100000 IGS_042 igs rps4|trnT rps4-trnT 47998 48373 0 376 LSC 0.013678 24 13 300 300 yes 0.133333 3 0.666667 0.014043 1.000000 56.200000 trnT tRNA trnT trnT 48374 48446 -1 73 LSC 0.000000 0 0 14 300 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_043 igs trnT|trnL trnT-trnL 48447 49151 0 705 LSC 0.001891 7 18 87 300 no 0.200000 5 0.600000 0.001915 1.000000 40.400000 trnL_part2 tRNA trnL trnL 49152 49186 -1 35 LSC 0.000000 0 0 258 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnL_part1 tRNA trnL trnL 49613 49662 -1 50 LSC 0.000000 0 0 300 28 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_046 igs trnL|trnF trnL-trnF 49663 50255 0 593 LSC 0.006294 20 172 300 215 yes 0.333333 8 0.625000 0.007244 1.000000 58.800000 trnF tRNA trnF trnF 50256 50328 1 73 LSC 0.000000 0 0 177 142 no 0.000000 1 0.000000 0.000000 1.000000 29.400000 IGS_047 igs trnF|ndhJ trnF-ndhJ 50329 50999 0 671 LSC 0.005904 13 10 250 300 yes 0.200000 5 0.600000 0.005932 1.000000 50.700000 ndhJ gene ndhJ ndhJ 51000 51476 -1 477 LSC 0.000000 0 0 91 300 no 0.000000 1 0.000000 0.000000 1.000000 29.300000 IGS_048 igs ndhJ|ndhK ndhJ-ndhK 51477 51581 0 105 LSC 0.001270 1 0 300 300 no 0.066667 2 0.500000 0.001270 1.000000 36.800000 ndhK gene ndhK ndhK 51582 52436 -1 855 LSC 0.000936 6 0 300 300 no 0.133333 3 0.666667 0.000936 1.000000 43.800000 ndhC gene ndhC ndhC 52316 52678 -1 363 LSC 0.000735 2 0 300 71 no 0.133333 3 0.666667 0.000735 1.000000 28.900000 IGS_050 igs ndhC|trnV ndhC-trnV 52679 53814 0 1136 LSC 0.003789 23 43 300 300 yes 0.200000 6 0.500000 0.003851 1.000000 52.600000 trnV_part2 tRNA trnV trnV 53815 53849 -1 35 LSC 0.003810 1 0 24 270 no 0.066667 2 0.500000 0.003810 1.000000 27.100000 trnV_part1 tRNA trnV trnV 54425 54462 -1 38 LSC 0.000000 0 0 300 180 no 0.000000 1 0.000000 0.000000 1.000000 32.200000 IGS_053 igs trnV|trnM trnV-trnM 54463 54669 0 207 LSC 0.002945 2 18 300 75 no 0.133333 4 0.500000 0.003225 1.000000 34.600000 trnM tRNA trnM trnM 54670 54742 1 73 LSC 0.000000 0 0 26 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_054 igs trnM|atpE trnM-atpE 54743 54976 0 234 LSC 0.005210 4 0 99 300 no 0.200000 5 0.600000 0.005210 1.000000 34.400000 atpE gene atpE atpE 54977 55378 -1 402 LSC 0.001658 5 0 127 300 no 0.200000 4 0.750000 0.001658 1.000000 36.500000 atpB gene atpB atpB 55375 56871 -1 1497 LSC 0.001781 11 0 300 115 no 0.200000 5 0.600000 0.001781 1.000000 39.100000 IGS_056 igs atpB|rbcL atpB-rbcL 56872 57693 0 822 LSC 0.002688 11 8 166 300 no 0.133333 4 0.500000 0.002711 1.000000 43.900000 rbcL gene rbcL rbcL 57694 59127 1 1434 LSC 0.002683 18 0 267 215 no 0.133333 5 0.400000 0.002683 1.000000 45.300000 IGS_057 igs rbcL|accD rbcL-accD 59128 59909 0 782 LSC 0.002606 12 26 300 155 no 0.266667 7 0.571429 0.002658 1.000000 48.600000 accD gene accD accD 59910 61565 1 1656 LSC 0.003416 29 103 211 300 yes 0.333333 7 0.714286 0.003122 1.000000 55.700000 IGS_058 igs accD|psaI accD-psaI 61566 62325 0 760 LSC 0.002013 8 40 300 300 yes 0.266667 6 0.666667 0.002072 0.976316 52.500000 psaI gene psaI psaI 62326 62436 1 111 LSC 0.001201 1 0 102 300 no 0.066667 2 0.500000 0.001201 1.000000 29.300000 IGS_059 igs psaI|ycf4 psaI-ycf4 62437 62879 0 443 LSC 0.002967 9 0 213 300 no 0.200000 4 0.750000 0.002967 1.000000 44.400000 ycf4 gene ycf4 ycf4 62880 63434 1 555 LSC 0.000721 3 0 23 300 no 0.133333 3 0.666667 0.000721 1.000000 29.300000 IGS_060 igs ycf4|cemA ycf4-cemA 63435 64173 0 739 LSC 0.002114 8 0 300 48 no 0.133333 5 0.400000 0.002114 1.000000 33.400000 cemA gene cemA cemA 64174 64863 1 690 LSC 0.002484 7 0 113 300 no 0.066667 4 0.250000 0.002484 1.000000 37.100000 IGS_061 igs cemA|petA cemA-petA 64864 65093 0 230 LSC 0.002899 5 0 300 300 no 0.133333 3 0.666667 0.002899 1.000000 40.300000 petA gene petA petA 65094 66056 1 963 LSC 0.001958 9 0 300 267 no 0.133333 4 0.500000 0.001958 1.000000 44.500000 IGS_062 igs petA|psbJ petA-psbJ 66057 66990 0 934 LSC 0.002794 17 12 33 300 no 0.266667 6 0.666667 0.002812 1.000000 37.600000 psbJ gene psbJ psbJ 66991 67113 -1 123 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_063 igs psbJ|psbL psbJ-psbL 67114 67237 0 124 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbL gene psbL psbL 67238 67354 -1 117 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_064 igs psbL|psbF psbL-psbF 67355 67376 0 22 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbF gene psbF psbF 67377 67496 -1 120 LSC 0.001111 1 0 300 300 no 0.066667 2 0.500000 0.001111 1.000000 36.500000 IGS_065 igs psbF|psbE psbF-psbE 67497 67505 0 9 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 67506 67757 -1 252 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_066 igs psbE|petL psbE-petL 67758 68915 0 1158 LSC 0.003824 23 64 300 14 no 0.266667 7 0.571429 0.003780 1.000000 41.400000 petL gene petL petL 68916 69011 1 96 LSC 0.003571 1 0 298 300 no 0.000000 2 0.000000 0.003571 1.000000 36.700000 IGS_067 igs petL|petG petL-petG 69012 69198 0 187 LSC 0.001426 2 4 81 300 no 0.133333 3 0.666667 0.001457 1.000000 31.900000 petG gene petG petG 69199 69312 1 114 LSC 0.000000 0 0 268 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_068 igs petG|trnW petG-trnW 69313 69442 0 130 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnW tRNA trnW trnW 69443 69516 -1 74 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_069 igs trnW|trnP trnW-trnP 69517 69680 0 164 LSC 0.002439 3 0 300 300 no 0.133333 3 0.666667 0.002439 1.000000 39.600000 trnP tRNA trnP trnP 69681 69754 -1 74 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_070 igs trnP|psaJ trnP-psaJ 69755 70200 0 446 LSC 0.001794 6 9 300 287 no 0.200000 4 0.750000 0.001814 1.000000 45.500000 psaJ gene psaJ psaJ 70201 70335 1 135 LSC 0.000000 0 0 300 152 no 0.000000 1 0.000000 0.000000 1.000000 30.100000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 70336 70771 0 436 LSC 0.005459 7 18 300 299 yes 0.200000 5 0.600000 0.005352 1.000000 49.900000 rpl33 gene rpl33 rpl33 70772 70972 1 201 LSC 0.001327 2 0 42 98 no 0.066667 2 0.500000 0.001327 1.000000 25.000000 IGS_072 igs rpl33|rps18 rpl33-rps18 70973 71161 0 189 LSC 0.003830 2 0 243 227 no 0.066667 3 0.333333 0.003830 1.000000 38.000000 rps18 gene rps18 rps18 71162 71467 1 306 LSC 0.002428 3 0 90 6 no 0.066667 3 0.333333 0.002428 1.000000 22.900000 IGS_073 igs rps18|rpl20 rps18-rpl20 71468 71640 0 173 LSC 0.010019 10 16 78 41 no 0.133333 4 0.500000 0.009622 1.000000 42.100000 rpl20 gene rpl20 rpl20 71641 72105 -1 465 LSC 0.018430 55 54 166 54 yes 0.266667 6 0.666667 0.019624 1.000000 57.900000 IGS_074 igs rpl20|rps12 rpl20-rps12 72106 72927 0 822 LSC 0.002873 7 2 138 242 no 0.200000 5 0.600000 0.002876 1.000000 41.800000 rps12_part1 gene rps12 rps12 72928 73041 -1 114 LSC 0.001170 1 0 202 128 no 0.066667 2 0.500000 0.001170 1.000000 31.200000 IGS_075 igs rps12|clpP rps12-clpP 73042 73196 0 155 LSC 0.006329 5 17 300 8 no 0.066667 3 0.333333 0.006859 1.000000 33.500000 clpP gene clpP clpP 73197 75224 -1 2028 LSC 0.003304 31 80 26 300 no 0.333333 8 0.625000 0.003062 1.000000 40.200000 IGS_076 igs clpP|psbB clpP-psbB 75225 75669 0 445 LSC 0.000599 2 1 300 300 no 0.133333 3 0.666667 0.000599 1.000000 40.400000 psbB gene psbB psbB 75670 77196 1 1527 LSC 0.000524 6 0 300 38 no 0.200000 4 0.750000 0.000524 1.000000 32.300000 IGS_077 igs psbB|psbT psbB-psbT 77197 77395 0 199 LSC 0.003446 3 0 300 300 no 0.133333 4 0.500000 0.003446 1.000000 39.700000 psbT gene psbT psbT 77396 77500 1 105 LSC 0.000000 0 0 160 300 no 0.000000 1 0.000000 0.000000 1.000000 30.800000 IGS_078 igs psbT|psbN psbT-psbN 77501 77573 0 73 LSC 0.001826 1 0 265 300 no 0.066667 2 0.500000 0.001826 1.000000 37.500000 psbN gene psbN psbN 77574 77705 -1 132 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_079 igs psbN|psbH psbN-psbH 77706 77816 0 111 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbH gene psbH psbH 77817 78038 1 222 LSC 0.001201 2 0 300 300 no 0.066667 2 0.500000 0.001201 1.000000 36.700000 IGS_080 igs psbH|petB psbH-petB 78039 78167 0 129 LSC 0.002067 2 0 300 215 no 0.066667 2 0.500000 0.002067 1.000000 37.900000 petB gene petB petB 78168 79570 1 1403 LSC 0.001493 12 2 300 300 no 0.133333 4 0.500000 0.001495 1.000000 44.400000 IGS_081 igs petB|petD petB-petD 79571 79763 0 193 LSC 0.000691 1 2 300 224 no 0.133333 3 0.666667 0.000695 1.000000 38.500000 petD gene petD petD 79764 80988 1 1225 LSC 0.002208 10 0 300 77 no 0.266667 7 0.571429 0.002208 1.000000 37.800000 IGS_082 igs petD|rpoA petD-rpoA 80989 81177 0 189 LSC 0.002923 2 5 154 300 no 0.066667 4 0.250000 0.002936 1.000000 37.400000 rpoA gene rpoA rpoA 81178 82191 -1 1014 LSC 0.000526 4 0 111 152 no 0.133333 3 0.666667 0.000526 1.000000 36.600000 IGS_083 igs rpoA|rps11 rpoA-rps11 82192 82256 0 65 LSC 0.002051 1 0 300 87 no 0.066667 2 0.500000 0.002051 1.000000 29.400000 rps11 gene rps11 rps11 82257 82673 -1 417 LSC 0.002147 3 0 300 164 no 0.066667 4 0.250000 0.002147 1.000000 36.600000 IGS_084 igs rps11|rpl36 rps11-rpl36 82674 82774 0 101 LSC 0.003960 3 0 206 63 no 0.200000 4 0.750000 0.003960 1.000000 32.700000 rpl36 gene rpl36 rpl36 82775 82888 -1 114 LSC 0.006349 2 0 300 138 no 0.066667 4 0.250000 0.006349 1.000000 35.400000 IGS_085 igs rpl36|C329_pgp033 rpl36-C329_pgp033 82889 82900 0 12 LSC 0.000000 0 0 50 126 no 0.000000 1 0.000000 NA 1.000000 22.500000 C329_pgp033 gene C329_pgp033 C329_pgp033 82901 83218 -1 318 LSC 0.005151 8 0 62 20 no 0.133333 4 0.500000 0.005151 1.000000 28.600000 IGS_086 igs C329_pgp033|rps8 C329_pgp033-rps8 83219 83333 0 115 LSC 0.010269 5 0 94 93 no 0.133333 4 0.500000 0.010269 1.000000 38.300000 rps8 gene rps8 rps8 83334 83738 -1 405 LSC 0.002634 5 0 86 300 no 0.066667 3 0.333333 0.002634 1.000000 31.400000 IGS_087 igs rps8|rpl14 rps8-rpl14 83739 83905 0 167 LSC 0.000798 1 0 300 192 no 0.066667 2 0.500000 0.000798 1.000000 35.500000 rpl14 gene rpl14 rpl14 83906 84274 -1 369 LSC 0.001032 2 0 300 14 no 0.133333 3 0.666667 0.001032 1.000000 24.900000 IGS_088 igs rpl14|rpl16 rpl14-rpl16 84275 84409 0 135 LSC 0.005926 3 11 176 300 no 0.133333 4 0.500000 0.001745 0.925926 43.800000 rpl16 gene rpl16 rpl16 84410 85840 -1 1431 LSC 0.002210 17 6 111 160 no 0.200000 6 0.500000 0.002214 1.000000 40.100000 IGS_089 igs rpl16|rps3 rpl16-rps3 85841 85986 0 146 LSC 0.001826 2 17 300 14 no 0.066667 4 0.250000 0.001893 1.000000 28.900000 rps3 gene rps3 rps3 85987 86643 -1 657 LSC 0.003392 9 0 300 300 no 0.200000 5 0.600000 0.003392 1.000000 47.000000 rpl22 gene rpl22 rpl22 86628 87095 -1 468 LSC 0.001425 5 0 300 7 no 0.066667 2 0.500000 0.001425 1.000000 26.000000 IGS_091 igs rpl22|rps19 rpl22-rps19 87096 87153 0 58 LSC 0.008210 1 0 300 300 no 0.000000 2 0.000000 0.008210 1.000000 39.600000 rps19 gene rps19 rps19 87154 87432 -1 279 LSC 0.000000 0 0 50 64 no 0.000000 1 0.000000 0.000000 1.000000 22.500000 IGS_092 igs rps19|rpl2 rps19-rpl2 87433 87508 0 76 IRb 0.010349 4 15 300 300 yes 0.333333 8 0.625000 0.009878 0.960526 55.700000 rpl2 gene rpl2 rpl2 87509 88998 -1 1490 IRb 0.000179 2 0 11 300 no 0.066667 2 0.500000 0.000179 1.000000 27.300000 IGS_093 igs rpl2|rpl23 rpl2-rpl23 88999 89016 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 89017 89298 -1 282 IRb 0.000473 1 0 300 151 no 0.066667 2 0.500000 0.000473 1.000000 32.000000 IGS_094 igs rpl23|trnI rpl23-trnI 89299 89605 0 307 IRb 0.006161 5 142 300 164 no 0.066667 3 0.333333 0.005772 1.000000 42.500000 IGS_095 igs trnI|ycf2 trnI-ycf2 89680 89792 0 113 IRb 0.009440 3 0 224 7 no 0.066667 4 0.250000 0.009440 1.000000 28.100000 ycf2 gene ycf2 ycf2 89793 96653 1 6861 IRb 0.000822 29 6 16 191 no 0.266667 7 0.571429 0.000822 0.999125 25.900000 IGS_096 igs ycf2|ycf15 ycf2-ycf15 96654 96743 0 90 IRb 0.000000 0 0 300 101 no 0.000000 1 0.000000 0.000000 1.000000 26.300000 ycf15 gene ycf15 ycf15 96744 97007 1 264 IRb 0.001587 1 0 300 257 no 0.000000 2 0.000000 0.001587 1.000000 34.900000 IGS_097 igs ycf15|trnL-CAA ycf15-trnL-CAA 97008 97285 0 278 IRb 0.001713 2 0 162 300 no 0.066667 3 0.333333 0.001713 1.000000 33.800000 trnL-CAA tRNA trnL-CAA trnL-CAA 97286 97366 -1 81 IRb 0.000000 0 0 20 300 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_098 igs trnL-CAA|ndhB trnL-CAA-ndhB 97367 97905 0 539 IRb 0.000247 1 0 101 300 no 0.066667 2 0.500000 0.000247 1.000000 32.900000 ndhB gene ndhB ndhB 97906 100117 -1 2212 IRb 0.000000 0 0 300 24 no 0.000000 1 0.000000 0.000000 1.000000 25.300000 IGS_099 igs ndhB|rps7 ndhB-rps7 100118 100390 0 273 IRb 0.000907 1 0 300 300 no 0.000000 2 0.000000 0.000907 1.000000 34.600000 rps7 gene rps7 rps7 100391 100858 -1 468 IRb 0.000000 0 0 248 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_100 igs rps7|rps12 rps7-rps12 100859 100911 0 53 IRb 0.002516 1 0 300 300 no 0.066667 2 0.500000 0.002516 1.000000 38.500000 rps12_part2 gene rps12 rps12 100912 101705 -1 794 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_101 igs rps12|trnV rps12-trnV 101706 103338 0 1633 IRb 0.001388 17 1 300 300 no 0.066667 2 0.500000 0.001389 1.000000 43.000000 IGS_102 igs trnV|rrn16 trnV-rrn16 103411 103638 0 228 IRb 0.000000 0 1 300 300 no 0.066667 2 0.500000 0.000000 0.995614 35.400000 rrn16 rRNA rrn16 rrn16 103639 105138 1 1500 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_103 igs rrn16|trnI rrn16-trnI 105139 105438 0 300 IRb 0.000889 2 0 300 300 no 0.066667 2 0.500000 0.000889 1.000000 36.200000 trnI_part1 tRNA trnI trnI 105439 105475 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 106198 106232 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_106 igs trnI|trnA trnI-trnA 106233 106296 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 106297 106334 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 107146 107180 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_109 igs trnA|rrn23 trnA-rrn23 107181 107333 0 153 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23 rRNA rrn23 rrn23 107334 110156 1 2823 IRb 0.000614 13 10 300 300 no 0.133333 3 0.666667 0.000616 1.000000 41.000000 IGS_110 igs rrn23|rrn4.5 rrn23-rrn4.5 110157 110257 0 101 IRb 0.001320 1 0 300 300 no 0.066667 2 0.500000 0.001320 1.000000 36.800000 rrn4.5 rRNA rrn4.5 rrn4.5 110258 110360 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_111 igs rrn4.5|rrn5 rrn4.5-rrn5 110361 110584 0 224 IRb 0.000595 1 0 300 255 no 0.066667 2 0.500000 0.000595 1.000000 35.800000 rrn5 rRNA rrn5 rrn5 110585 110705 1 121 IRb 0.001102 1 0 300 134 no 0.066667 2 0.500000 0.001102 1.000000 31.600000 IGS_112 igs rrn5|trnR rrn5-trnR 110706 110960 0 255 IRb 0.002216 3 11 300 223 no 0.333333 8 0.625000 0.001902 0.996078 47.500000 trnR tRNA trnR trnR 110961 111034 1 74 IRb 0.000000 0 0 120 149 no 0.000000 1 0.000000 0.000000 1.000000 27.700000 IGS_113 igs trnR|trnN trnR-trnN 111035 111620 0 586 IRb 0.005721 9 5 194 300 no 0.200000 5 0.600000 0.005734 1.000000 48.600000 trnN tRNA trnN trnN 111621 111692 -1 72 IRb 0.000000 0 0 19 300 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_114 igs trnN|ycf1 trnN-ycf1 111693 112021 0 329 IRb 0.000405 1 1 91 300 no 0.066667 2 0.500000 0.000407 1.000000 28.400000 ycf1 gene ycf1 ycf1 112022 113182 1 1161 IRb 0.001706 8 91 300 300 yes 0.200000 5 0.600000 0.001755 1.000000 51.500000 ndhF gene ndhF ndhF 113162 115384 -1 2223 SSC 0.002468 29 0 15 300 no 0.266667 7 0.571429 0.002468 1.000000 32.400000 IGS_116 igs ndhF|rpl32 ndhF-rpl32 115385 115637 0 253 SSC 0.010013 19 4 59 223 yes 0.133333 3 0.666667 0.010166 1.000000 41.500000 rpl32 gene rpl32 rpl32 115638 115808 1 171 SSC 0.008577 11 4 300 52 no 0.133333 4 0.500000 0.008767 1.000000 39.900000 IGS_117 igs rpl32|trnL rpl32-trnL 115809 116678 0 870 SSC 0.008911 33 14 300 142 yes 0.266667 7 0.571429 0.008939 1.000000 51.400000 IGS_118 igs trnL|ccsA trnL-ccsA 116759 116860 0 102 SSC 0.006349 2 0 198 300 no 0.066667 3 0.333333 0.006349 1.000000 40.200000 ccsA gene ccsA ccsA 116861 117802 1 942 SSC 0.000849 6 0 39 26 no 0.266667 5 0.800000 0.000849 1.000000 33.100000 IGS_119 igs ccsA|ndhD ccsA-ndhD 117803 118038 0 236 SSC 0.005650 7 2 300 300 no 0.133333 4 0.500000 0.005677 1.000000 43.500000 ndhD gene ndhD ndhD 118039 119541 -1 1503 SSC 0.001039 10 0 209 64 no 0.133333 3 0.666667 0.001039 1.000000 33.600000 IGS_120 igs ndhD|psaC ndhD-psaC 119542 119659 0 118 SSC 0.009847 4 0 108 300 no 0.133333 4 0.500000 0.009847 1.000000 38.000000 psaC gene psaC psaC 119660 119905 -1 246 SSC 0.001084 2 0 17 300 no 0.133333 3 0.666667 0.001084 1.000000 24.000000 IGS_121 igs psaC|ndhE psaC-ndhE 119906 120156 0 251 SSC 0.001594 3 0 263 245 no 0.133333 3 0.666667 0.001594 1.000000 38.500000 ndhE gene ndhE ndhE 120157 120462 -1 306 SSC 0.001992 3 0 300 151 no 0.066667 3 0.333333 0.001992 1.000000 33.600000 IGS_122 igs ndhE|ndhG ndhE-ndhG 120463 120685 0 223 SSC 0.003587 3 0 60 119 no 0.133333 4 0.500000 0.003587 1.000000 29.000000 ndhG gene ndhG ndhG 120686 121216 -1 531 SSC 0.000897 1 0 45 69 no 0.000000 2 0.000000 0.000897 1.000000 27.600000 IGS_123 igs ndhG|ndhI ndhG-ndhI 121217 121608 0 392 SSC 0.005199 10 0 300 32 no 0.133333 5 0.400000 0.005199 1.000000 31.100000 ndhI gene ndhI ndhI 121609 122112 -1 504 SSC 0.002041 3 0 16 21 no 0.066667 4 0.250000 0.002041 1.000000 27.100000 IGS_124 igs ndhI|ndhA ndhI-ndhA 122113 122196 0 84 SSC 0.007937 2 0 300 300 no 0.066667 3 0.333333 0.007937 1.000000 41.500000 ndhA gene ndhA ndhA 122197 124445 -1 2249 SSC 0.002689 33 22 62 300 no 0.400000 9 0.666667 0.002696 0.996888 39.700000 IGS_125 igs ndhA|ndhH ndhA-ndhH 124446 124446 0 1 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 ndhH gene ndhH ndhH 124447 125628 -1 1182 SSC 0.001305 10 0 300 300 no 0.133333 4 0.500000 0.001305 1.000000 44.100000 IGS_126 igs ndhH|rps15 ndhH-rps15 125629 125739 0 111 SSC 0.002402 2 0 300 300 no 0.133333 3 0.666667 0.002402 1.000000 39.600000 rps15 gene rps15 rps15 125740 126003 -1 264 SSC 0.000000 0 0 300 152 no 0.000000 1 0.000000 0.000000 1.000000 30.100000 IGS_127 igs rps15|ycf1 rps15-ycf1 126004 126405 0 402 SSC 0.004359 8 6 300 300 no 0.200000 6 0.500000 0.004384 1.000000 45.900000 ycf1 gene ycf1 ycf1 126406 132126 -1 5721 SSC 0.004754 140 123 118 300 yes 0.333333 8 0.625000 0.004789 1.000000 41.700000 IGS_128 igs ycf1|trnN ycf1-trnN 132127 132455 0 329 IRa 0.000405 1 1 300 91 no 0.066667 2 0.500000 0.000407 1.000000 28.400000 trnN tRNA trnN trnN 132456 132527 1 72 IRa 0.000000 0 0 300 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_129 igs trnN|trnR trnN-trnR 132528 133113 0 586 IRa 0.005721 9 5 300 194 no 0.200000 5 0.600000 0.005734 1.000000 48.600000 trnR tRNA trnR trnR 133114 133187 -1 74 IRa 0.000000 0 0 149 120 no 0.000000 1 0.000000 0.000000 1.000000 27.700000 IGS_130 igs trnR|rrn5 trnR-rrn5 133188 133442 0 255 IRa 0.002216 3 11 223 300 no 0.333333 8 0.625000 0.001902 0.996078 47.500000 rrn5 rRNA rrn5 rrn5 133443 133563 -1 121 IRa 0.001102 1 0 134 300 no 0.066667 2 0.500000 0.001102 1.000000 31.600000 IGS_131 igs rrn5|rrn4.5 rrn5-rrn4.5 133564 133787 0 224 IRa 0.000595 1 0 255 300 no 0.066667 2 0.500000 0.000595 1.000000 35.800000 rrn4.5 rRNA rrn4.5 rrn4.5 133788 133890 -1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_132 igs rrn4.5|rrn23 rrn4.5-rrn23 133891 133991 0 101 IRa 0.001320 1 0 300 300 no 0.066667 2 0.500000 0.001320 1.000000 36.800000 rrn23 rRNA rrn23 rrn23 133992 136814 -1 2823 IRa 0.000614 13 10 300 300 no 0.133333 3 0.666667 0.000616 1.000000 41.000000 IGS_133 igs rrn23|trnA rrn23-trnA 136815 136967 0 153 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 136968 137002 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 137814 137851 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_136 igs trnA|trnI trnA-trnI 137852 137915 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 137916 137950 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 138673 138709 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_139 igs trnI|rrn16 trnI-rrn16 138710 139009 0 300 IRa 0.000889 2 0 300 300 no 0.066667 2 0.500000 0.000889 1.000000 36.200000 rrn16 rRNA rrn16 rrn16 139010 140509 -1 1500 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_140 igs rrn16|trnV rrn16-trnV 140510 140737 0 228 IRa 0.000000 0 1 300 300 no 0.066667 2 0.500000 0.000000 0.995614 35.400000 IGS_141 igs trnV|rps12 trnV-rps12 140810 142442 0 1633 IRa 0.001388 17 1 300 300 no 0.066667 2 0.500000 0.001389 1.000000 43.000000 rps12_part2 gene rps12 rps12 142443 143236 1 794 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_142 igs rps12|rps7 rps12-rps7 143237 143289 0 53 IRa 0.002516 1 0 300 300 no 0.066667 2 0.500000 0.002516 1.000000 38.500000 rps7 gene rps7 rps7 143290 143757 1 468 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_143 igs rps7|ndhB rps7-ndhB 143758 144030 0 273 IRa 0.000488 1 0 300 300 no 0.066667 2 0.500000 0.000488 1.000000 35.700000 ndhB gene ndhB ndhB 144031 146242 1 2212 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.500000 IGS_144 igs ndhB|trnL ndhB-trnL 146243 146781 0 539 IRa 0.000247 1 0 300 101 no 0.066667 2 0.500000 0.000247 1.000000 32.900000 IGS_145 igs trnL|ycf15 trnL-ycf15 146863 147140 0 278 IRa 0.001713 2 0 300 162 no 0.066667 3 0.333333 0.001713 1.000000 33.800000 ycf15 gene ycf15 ycf15 147141 147404 -1 264 IRa 0.001587 1 0 257 300 no 0.000000 2 0.000000 0.001587 1.000000 34.900000 IGS_146 igs ycf15|ycf2 ycf15-ycf2 147405 147494 0 90 IRa 0.000000 0 0 101 300 no 0.000000 1 0.000000 0.000000 1.000000 26.300000 ycf2 gene ycf2 ycf2 147495 154355 -1 6861 IRa 0.000880 32 6 191 16 no 0.266667 7 0.571429 0.000881 0.999125 26.000000 trnH tRNA trnH trnH 153492 153566 -1 75 IRa 0.000000 0 0 300 136 no 0.000000 1 0.000000 0.000000 1.000000 28.900000 IGS_148 igs trnH|trnI trnH-trnI 153567 154468 0 902 IRa 0.002999 11 0 300 224 no 0.266667 6 0.666667 0.002999 1.000000 47.900000 IGS_149 igs trnI|rpl23 trnI-rpl23 154543 154849 0 307 IRa 0.006161 5 142 164 300 no 0.066667 3 0.333333 0.005772 1.000000 42.500000 rpl23 gene rpl23 rpl23 154850 155131 1 282 IRa 0.000473 1 0 151 300 no 0.066667 2 0.500000 0.000473 1.000000 32.000000 IGS_150 igs rpl23|rpl2 rpl23-rpl2 155132 155149 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 155150 156639 1 1490 IRa 0.000179 2 0 300 11 no 0.066667 2 0.500000 0.000179 1.000000 27.300000 IGS_151 igs rpl2|trnH rpl2-trnH 156640 21 0 163 IRa 0.004586 4 39 300 136 no 0.333333 8 0.625000 0.004867 0.981595 45.000000