feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 11 83 -1 73 LSC 0.000000 0 0 300 46 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 IGS_001 igs trnH|psbA trnH-psbA 84 373 0 290 LSC 0.022414 11 0 300 300 yes 1.000000 4 1.000000 0.022414 1.000000 67.300000 psbA gene psbA psbA 374 1435 -1 1062 LSC 0.000000 0 0 42 177 no 0.000000 1 0.000000 0.000000 1.000000 28.100000 IGS_002 igs psbA|trnK psbA-trnK 1436 1705 0 270 LSC 0.011728 5 2 300 241 no 0.500000 3 0.666667 0.011811 0.992593 51.400000 trnK_part2 tRNA trnK trnK 1706 1740 -1 35 LSC 0.000000 0 0 2 206 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 matK gene matK matK 2041 3621 -1 1581 LSC 0.003900 9 0 47 158 no 0.500000 3 0.666667 0.003900 1.000000 40.200000 IGS_005 igs matK|trnK matK-trnK 3622 4293 0 672 LSC 0.005208 6 1 52 173 no 1.000000 4 1.000000 0.005215 0.998512 51.300000 trnK_part1 tRNA trnK trnK 4294 4330 -1 37 LSC 0.000000 0 0 140 136 no 0.000000 1 0.000000 0.000000 1.000000 28.900000 IGS_006 igs trnK|rps16 trnK-rps16 4331 5005 0 675 LSC 0.012593 14 7 177 7 yes 1.000000 4 1.000000 0.012714 0.989630 53.500000 rps16 gene rps16 rps16 5006 6146 -1 1141 LSC 0.007157 13 1 14 60 no 1.000000 4 1.000000 0.007161 1.000000 49.500000 IGS_007 igs rps16|trnQ rps16-trnQ 6147 6541 0 395 LSC 0.015190 9 1 46 102 yes 0.000000 2 0.000000 0.015228 0.997468 34.100000 trnQ tRNA trnQ trnQ 6542 6613 -1 72 LSC 0.000000 0 0 19 30 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_008 igs trnQ|psbK trnQ-psbK 6614 6942 0 329 LSC 0.004053 2 0 91 267 no 0.000000 2 0.000000 0.004053 1.000000 28.800000 psbK gene psbK psbK 6943 7128 1 186 LSC 0.000000 0 0 247 81 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_009 igs psbK|psbI psbK-psbI 7129 7513 0 385 LSC 0.006926 4 2 300 126 no 0.000000 2 0.000000 0.006963 0.994805 34.900000 psbI gene psbI psbI 7514 7624 1 111 LSC 0.000000 0 0 192 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_010 igs psbI|trnS psbI-trnS 7625 7715 0 91 LSC 0.005495 1 0 300 192 no 0.250000 2 0.500000 0.005495 1.000000 41.700000 trnS tRNA trnS trnS 7716 7803 1 88 LSC 0.000000 0 0 75 104 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_011 igs trnS|trnG trnS-trnG 7804 8451 0 648 LSC 0.005916 6 0 163 300 no 0.500000 3 0.666667 0.005916 1.000000 50.400000 trnG_part1 tRNA trnG trnG 8452 8474 1 23 LSC 0.000000 0 0 91 300 no 0.000000 1 0.000000 0.000000 1.000000 25.600000 trnG_part2 tRNA trnG trnG 9192 9240 1 49 LSC 0.000000 0 0 21 42 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_014 igs trnG|trnR trnG-trnR 9241 9397 0 157 LSC 0.024416 6 2 70 286 yes 1.000000 4 1.000000 0.024642 0.993631 59.900000 trnR tRNA trnR trnR 9398 9469 1 72 LSC 0.000000 0 0 5 214 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_015 igs trnR|atpA trnR-atpA 9470 9759 0 290 LSC 0.004598 2 0 77 237 no 0.000000 2 0.000000 0.004598 1.000000 27.500000 atpA gene atpA atpA 9760 11283 -1 1524 LSC 0.000875 2 0 27 54 no 0.000000 2 0.000000 0.000875 1.000000 27.500000 IGS_016 igs atpA|atpF atpA-atpF 11284 11348 0 65 LSC 0.010256 1 0 300 43 no 0.000000 2 0.000000 0.010256 1.000000 28.500000 atpF gene atpF atpF 11349 12634 -1 1286 LSC 0.002074 4 16 10 65 no 0.500000 3 0.666667 0.001824 1.000000 37.900000 IGS_017 igs atpF|atpH atpF-atpH 12635 13091 0 457 LSC 0.004741 4 1 300 300 no 0.500000 3 0.666667 0.004749 0.997812 49.800000 atpH gene atpH atpH 13092 13337 -1 246 LSC 0.000000 0 0 159 63 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 IGS_018 igs atpH|atpI atpH-atpI 13338 13834 0 497 LSC 0.006707 5 7 300 300 no 0.000000 2 0.000000 0.006803 0.985915 43.500000 atpI gene atpI atpI 13835 14584 -1 750 LSC 0.000000 0 0 127 74 no 0.000000 1 0.000000 0.000000 1.000000 30.600000 IGS_019 igs atpI|rps2 atpI-rps2 14585 14823 0 239 LSC 0.007671 3 0 300 300 no 0.500000 3 0.666667 0.007671 1.000000 48.100000 rps2 gene rps2 rps2 14824 15534 -1 711 LSC 0.001643 2 1 21 300 no 0.500000 3 0.666667 0.001643 0.998594 37.200000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 15535 15739 0 205 LSC 0.000000 0 0 224 171 no 0.000000 1 0.000000 0.000000 1.000000 31.600000 rpoC2 gene rpoC2 rpoC2 15740 19879 -1 4140 LSC 0.002456 16 0 300 145 no 1.000000 4 1.000000 0.002456 1.000000 51.300000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 19880 20060 0 181 LSC 0.003683 1 0 149 300 no 0.000000 2 0.000000 0.003683 1.000000 32.300000 rpoC1 gene rpoC1 rpoC1 20061 22909 -1 2849 LSC 0.000995 5 7 35 300 no 0.500000 3 0.666667 0.000997 0.997543 35.100000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 22910 22935 0 26 LSC 0.000000 0 0 230 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpoB gene rpoB rpoB 22936 26154 -1 3219 LSC 0.000828 4 0 256 191 no 0.000000 2 0.000000 0.000828 1.000000 36.400000 IGS_023 igs rpoB|trnC rpoB-trnC 26155 27252 0 1098 LSC 0.005313 9 1 300 207 yes 0.500000 3 0.666667 0.005317 0.999089 52.900000 trnC tRNA trnC trnC 27253 27323 1 71 LSC 0.000000 0 0 121 136 no 0.000000 1 0.000000 0.000000 1.000000 27.800000 IGS_024 igs trnC|petN trnC-petN 27324 27628 0 305 LSC 0.002186 1 0 192 300 no 0.000000 2 0.000000 0.002186 1.000000 34.600000 petN gene petN petN 27629 27718 1 90 LSC 0.000000 0 0 168 300 no 0.000000 1 0.000000 0.000000 1.000000 31.400000 IGS_025 igs petN|psbM petN-psbM 27719 28244 0 526 LSC 0.002218 2 0 258 66 no 0.500000 3 0.666667 0.002218 1.000000 39.300000 psbM gene psbM psbM 28245 28349 -1 105 LSC 0.006349 1 0 117 152 no 0.000000 2 0.000000 0.006349 1.000000 31.600000 IGS_026 igs psbM|trnD psbM-trnD 28350 29322 0 973 LSC 0.005995 9 1 38 171 no 0.500000 3 0.666667 0.006001 0.998972 41.200000 trnD tRNA trnD trnD 29323 29396 -1 74 LSC 0.000000 0 0 96 97 no 0.000000 1 0.000000 0.000000 1.000000 25.900000 IGS_027 igs trnD|trnY trnD-trnY 29397 29830 0 434 LSC 0.004608 3 0 170 288 no 0.000000 2 0.000000 0.004608 1.000000 37.200000 trnY tRNA trnY trnY 29831 29914 -1 84 LSC 0.000000 0 0 239 204 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_028 igs trnY|trnE trnY-trnE 29915 29973 0 59 LSC 0.000000 0 0 300 145 no 0.000000 1 0.000000 0.000000 1.000000 29.600000 trnE tRNA trnE trnE 29974 30046 -1 73 LSC 0.000000 0 0 300 72 no 0.000000 1 0.000000 0.000000 1.000000 24.100000 IGS_029 igs trnE|trnT trnE-trnT 30047 30876 0 830 LSC 0.008635 11 17 300 206 yes 1.000000 4 1.000000 0.008810 0.980723 66.300000 trnT tRNA trnT trnT 30877 30948 1 72 LSC 0.000000 0 0 127 134 no 0.000000 1 0.000000 0.000000 1.000000 28.300000 IGS_030 igs trnT|psbD trnT-psbD 30949 32205 0 1257 LSC 0.009149 18 4 199 152 yes 0.500000 3 0.666667 0.009177 0.996818 52.000000 psbD gene psbD psbD 32206 33267 1 1062 LSC 0.001726 3 0 95 276 no 0.500000 3 0.666667 0.001726 1.000000 42.600000 psbC gene psbC psbC 33251 34636 1 1386 LSC 0.000962 2 0 300 40 no 0.000000 2 0.000000 0.000962 1.000000 28.600000 IGS_032 igs psbC|trnS psbC-trnS 34637 34820 0 184 LSC 0.003623 1 0 141 101 no 0.000000 2 0.000000 0.003623 1.000000 28.600000 trnS tRNA trnS trnS 34821 34912 1 92 LSC 0.000000 0 0 143 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_033 igs trnS|psbZ trnS-psbZ 34913 35263 0 351 LSC 0.005223 3 0 235 300 no 0.500000 3 0.666667 0.005223 1.000000 47.600000 psbZ gene psbZ psbZ 35264 35452 1 189 LSC 0.000000 0 0 186 277 no 0.000000 1 0.000000 0.000000 1.000000 32.700000 IGS_034 igs psbZ|trnG psbZ-trnG 35453 35934 0 482 LSC 0.005533 4 0 300 192 no 0.000000 2 0.000000 0.005533 1.000000 40.500000 IGS_035 igs trnG|trnfM trnG-trnfM 36006 36148 0 143 LSC 0.004662 1 0 103 191 no 0.000000 2 0.000000 0.004662 1.000000 29.400000 trnfM tRNA trnfM trnfM 36149 36222 -1 74 LSC 0.000000 0 0 21 117 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 IGS_036 igs trnfM|rps14 trnfM-rps14 36223 36382 0 160 LSC 0.003125 1 0 95 96 no 0.250000 2 0.500000 0.003125 1.000000 32.800000 rps14 gene rps14 rps14 36383 36685 -1 303 LSC 0.002200 1 0 42 233 no 0.000000 2 0.000000 0.002200 1.000000 23.400000 IGS_037 igs rps14|psaB rps14-psaB 36686 36819 0 134 LSC 0.000000 0 0 206 99 no 0.000000 1 0.000000 0.000000 1.000000 26.200000 psaB gene psaB psaB 36820 39024 -1 2205 LSC 0.000605 2 0 300 300 no 0.000000 2 0.000000 0.000605 1.000000 38.900000 IGS_038 igs psaB|psaA psaB-psaA 39025 39049 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 39050 41302 -1 2253 LSC 0.001701 6 0 300 252 no 0.500000 3 0.666667 0.001701 1.000000 48.900000 IGS_039 igs psaA|ycf3 psaA-ycf3 41303 42003 0 701 LSC 0.006657 7 0 300 112 no 0.000000 2 0.000000 0.006657 1.000000 37.600000 ycf3 gene ycf3 ycf3 42004 43162 -1 1159 LSC 0.003164 6 0 38 41 no 0.500000 3 0.666667 0.003164 1.000000 39.300000 IGS_040 igs ycf3|trnS ycf3-trnS 43163 44239 0 1077 LSC 0.002940 5 2 300 86 yes 1.000000 4 1.000000 0.002944 0.999071 52.300000 trnS tRNA trnS trnS 44240 44326 1 87 LSC 0.005747 1 0 300 120 no 0.250000 2 0.500000 0.005747 1.000000 36.500000 IGS_041 igs trnS|rps4 trnS-rps4 44327 44632 0 306 LSC 0.003813 2 0 0 300 no 0.500000 3 0.666667 0.003813 1.000000 30.800000 rps4 gene rps4 rps4 44633 45238 -1 606 LSC 0.000000 0 0 138 149 no 0.000000 1 0.000000 0.000000 1.000000 35.400000 IGS_042 igs rps4|trnT rps4-trnT 45239 45623 0 385 LSC 0.006494 4 0 300 300 no 0.500000 3 0.666667 0.006494 1.000000 49.100000 trnT tRNA trnT trnT 45624 45697 -1 74 LSC 0.000000 0 0 50 278 no 0.000000 1 0.000000 0.000000 1.000000 22.500000 IGS_043 igs trnT|trnL trnT-trnL 45698 46269 0 572 LSC 0.005828 5 0 124 146 no 0.000000 2 0.000000 0.005828 1.000000 37.400000 trnL_part1 tRNA trnL trnL 46270 46300 1 31 LSC 0.000000 0 0 41 115 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 trnL_part2 tRNA trnL trnL 46811 46860 1 50 LSC 0.000000 0 0 10 105 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_046 igs trnL|trnF trnL-trnF 46861 47547 0 687 LSC 0.011645 12 39 60 136 yes 0.500000 3 0.666667 0.011480 1.000000 52.100000 trnF tRNA trnF trnF 47548 47620 1 73 LSC 0.000000 0 0 90 63 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 IGS_047 igs trnF|ndhJ trnF-ndhJ 47621 48202 0 582 LSC 0.005727 5 1 163 244 no 0.000000 2 0.000000 0.005737 0.998282 40.700000 ndhJ gene ndhJ ndhJ 48203 48679 -1 477 LSC 0.002446 2 0 270 51 no 0.500000 3 0.666667 0.002446 1.000000 37.300000 IGS_048 igs ndhJ|ndhK ndhJ-ndhK 48680 48781 0 102 LSC 0.006536 1 0 191 178 no 0.000000 2 0.000000 0.006536 1.000000 36.300000 ndhK gene ndhK ndhK 48782 49459 -1 678 LSC 0.001967 2 0 50 4 no 0.000000 2 0.000000 0.001967 1.000000 26.600000 IGS_049 igs ndhK|ndhC ndhK-ndhC 49460 49531 0 72 LSC 0.009259 1 0 40 216 no 0.000000 2 0.000000 0.009259 1.000000 27.700000 ndhC gene ndhC ndhC 49532 49894 -1 363 LSC 0.001377 1 0 67 53 no 0.250000 2 0.500000 0.001377 1.000000 29.700000 IGS_050 igs ndhC|trnV ndhC-trnV 49895 50733 0 839 LSC 0.011350 15 5 146 300 yes 0.500000 3 0.666667 0.010983 0.995232 53.300000 trnV_part2 tRNA trnV trnV 50734 50768 -1 35 LSC 0.000000 0 0 36 300 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 trnV_part1 tRNA trnV trnV 51369 51407 -1 39 LSC 0.000000 0 0 60 150 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 IGS_053 igs trnV|trnM trnV-trnM 51408 51591 0 184 LSC 0.003623 1 0 99 74 no 0.000000 2 0.000000 0.003623 1.000000 26.600000 trnM tRNA trnM trnM 51592 51664 1 73 LSC 0.000000 0 0 33 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_054 igs trnM|atpE trnM-atpE 51665 51801 0 137 LSC 0.004866 1 0 106 300 no 0.000000 2 0.000000 0.004866 1.000000 29.800000 atpE gene atpE atpE 51802 52200 -1 399 LSC 0.000000 0 0 135 62 no 0.000000 1 0.000000 0.000000 1.000000 25.500000 atpB gene atpB atpB 52197 53693 -1 1497 LSC 0.001336 3 0 300 141 no 0.000000 2 0.000000 0.001336 1.000000 36.400000 IGS_056 igs atpB|rbcL atpB-rbcL 53694 54492 0 799 LSC 0.005430 7 2 300 300 yes 0.500000 3 0.666667 0.005437 0.997497 53.100000 rbcL gene rbcL rbcL 54493 55932 1 1440 LSC 0.001852 4 0 109 2 no 0.000000 2 0.000000 0.001852 1.000000 26.300000 IGS_057 igs rbcL|accD rbcL-accD 55933 56644 0 712 LSC 0.010300 12 30 3 114 yes 1.000000 4 1.000000 0.010683 0.963483 54.900000 accD gene accD accD 56645 58099 1 1455 LSC 0.001489 4 0 177 131 yes 1.000000 4 1.000000 0.001489 1.000000 54.600000 IGS_058 igs accD|psaI accD-psaI 58100 58771 0 672 LSC 0.004960 5 0 300 136 no 0.000000 2 0.000000 0.004960 1.000000 38.400000 psaI gene psaI psaI 58772 58885 1 114 LSC 0.000000 0 0 208 22 no 0.000000 1 0.000000 0.000000 1.000000 20.400000 IGS_059 igs psaI|ycf4 psaI-ycf4 58886 59276 0 391 LSC 0.003846 2 1 300 107 no 0.500000 3 0.666667 0.003846 0.997442 40.600000 ycf4 gene ycf4 ycf4 59277 59831 1 555 LSC 0.002102 2 0 116 151 no 0.500000 3 0.666667 0.002102 1.000000 43.500000 IGS_060 igs ycf4|cemA ycf4-cemA 59832 60247 0 416 LSC 0.006024 4 1 300 300 no 0.500000 3 0.666667 0.006024 0.997596 49.700000 cemA gene cemA cemA 60248 60937 1 690 LSC 0.000966 1 0 80 300 no 0.000000 2 0.000000 0.000966 1.000000 31.600000 IGS_061 igs cemA|petA cemA-petA 60938 61158 0 221 LSC 0.000000 0 0 139 99 no 0.000000 1 0.000000 0.000000 1.000000 26.200000 petA gene petA petA 61159 62121 1 963 LSC 0.003981 6 0 300 20 no 0.500000 3 0.666667 0.003981 1.000000 38.400000 IGS_062 igs petA|psbJ petA-psbJ 62122 63099 0 978 LSC 0.008010 12 0 276 240 yes 0.500000 3 0.666667 0.008010 1.000000 54.500000 psbJ gene psbJ psbJ 63100 63222 -1 123 LSC 0.000000 0 0 284 117 no 0.000000 1 0.000000 0.000000 1.000000 27.500000 IGS_063 igs psbJ|psbL psbJ-psbL 63223 63363 0 141 LSC 0.004728 1 0 300 300 no 0.000000 2 0.000000 0.004728 1.000000 36.800000 psbL gene psbL psbL 63364 63480 -1 117 LSC 0.000000 0 0 23 300 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_064 igs psbL|psbF psbL-psbF 63481 63501 0 21 LSC 0.000000 0 0 140 300 no 0.000000 1 0.000000 0.000000 1.000000 29.200000 psbF gene psbF psbF 63502 63621 -1 120 LSC 0.000000 0 0 161 300 no 0.000000 1 0.000000 0.000000 1.000000 30.800000 IGS_065 igs psbF|psbE psbF-psbE 63622 63630 0 9 LSC 0.000000 0 0 281 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 63631 63882 -1 252 LSC 0.000000 0 0 290 240 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_066 igs psbE|petL psbE-petL 63883 65143 0 1261 LSC 0.004494 9 0 300 138 no 0.500000 3 0.666667 0.004494 1.000000 47.600000 petL gene petL petL 65144 65239 1 96 LSC 0.000000 0 0 69 42 no 0.000000 1 0.000000 0.000000 1.000000 21.900000 IGS_067 igs petL|petG petL-petG 65240 65426 0 187 LSC 0.002674 1 0 165 300 no 0.250000 2 0.500000 0.002674 1.000000 37.700000 petG gene petG petG 65427 65540 1 114 LSC 0.000000 0 0 144 300 no 0.000000 1 0.000000 0.000000 1.000000 29.500000 IGS_068 igs petG|trnW petG-trnW 65541 65701 0 161 LSC 0.000000 0 16 258 300 no 0.250000 2 0.500000 0.000000 0.900621 41.100000 trnW tRNA trnW trnW 65702 65775 -1 74 LSC 0.000000 0 16 300 300 no 0.250000 2 0.500000 0.000000 0.783784 36.900000 IGS_069 igs trnW|trnP trnW-trnP 65776 65964 0 189 LSC 0.000000 0 1 300 300 no 0.250000 2 0.500000 0.000000 1.000000 39.100000 trnP tRNA trnP trnP 65965 66038 -1 74 LSC 0.000000 0 0 300 241 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_070 igs trnP|psaJ trnP-psaJ 66039 66417 0 379 LSC 0.003518 2 0 300 215 no 0.000000 2 0.000000 0.003518 1.000000 37.600000 psaJ gene psaJ psaJ 66418 66546 1 129 LSC 0.000000 0 0 131 86 no 0.000000 1 0.000000 0.000000 1.000000 25.200000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 66547 66975 0 429 LSC 0.017871 13 1 260 191 yes 0.500000 3 0.666667 0.017906 0.997669 57.200000 rpl33 gene rpl33 rpl33 66976 67176 1 201 LSC 0.003317 1 0 140 3 no 0.000000 2 0.000000 0.003317 1.000000 21.100000 IGS_072 igs rpl33|rps18 rpl33-rps18 67177 67394 0 218 LSC 0.010703 4 0 9 221 no 1.000000 4 1.000000 0.010703 1.000000 45.300000 rps18 gene rps18 rps18 67395 67700 1 306 LSC 0.002179 1 0 9 41 no 0.000000 2 0.000000 0.002179 1.000000 20.900000 IGS_073 igs rps18|rpl20 rps18-rpl20 67701 68002 0 302 LSC 0.011038 5 4 84 300 no 0.000000 2 0.000000 0.011186 0.986755 33.400000 rpl20 gene rpl20 rpl20 68003 68356 -1 354 LSC 0.000000 0 0 21 93 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_074 igs rpl20|rps12 rpl20-rps12 68357 69123 0 767 LSC 0.004781 6 2 300 200 yes 1.000000 4 1.000000 0.004789 0.998696 62.200000 rps12_part1 gene rps12 rps12 69124 69237 -1 114 LSC 0.000000 0 0 66 86 no 0.000000 1 0.000000 0.000000 1.000000 23.700000 IGS_075 igs rps12|clpP rps12-clpP 69238 69417 0 180 LSC 0.029630 8 1 180 290 yes 0.000000 2 0.000000 0.029795 0.994444 51.700000 clpP gene clpP clpP 69418 71454 -1 2037 LSC 0.002948 9 15 4 114 yes 0.500000 3 0.666667 0.002967 0.992636 36.100000 IGS_076 igs clpP|psbB clpP-psbB 71455 71943 0 489 LSC 0.002732 2 11 300 101 no 0.500000 3 0.666667 0.002789 0.977505 43.500000 psbB gene psbB psbB 71944 73470 1 1527 LSC 0.001746 4 0 283 300 no 0.000000 2 0.000000 0.001746 1.000000 41.100000 IGS_077 igs psbB|psbT psbB-psbT 73471 73653 0 183 LSC 0.000000 0 0 300 148 no 0.000000 1 0.000000 0.000000 1.000000 29.800000 psbT gene psbT psbT 73654 73755 1 102 LSC 0.000000 0 0 300 46 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 IGS_078 igs psbT|psbN psbT-psbN 73756 73820 0 65 LSC 0.010256 1 0 300 21 no 0.000000 2 0.000000 0.010256 1.000000 26.900000 psbN gene psbN psbN 73821 73952 -1 132 LSC 0.005051 1 0 18 300 no 0.000000 2 0.000000 0.005051 1.000000 23.300000 IGS_079 igs psbN|psbH psbN-psbH 73953 74056 0 104 LSC 0.000000 0 0 110 300 no 0.000000 1 0.000000 0.000000 1.000000 27.000000 psbH gene psbH psbH 74057 74278 1 222 LSC 0.000000 0 0 214 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_080 igs psbH|petB psbH-petB 74279 74412 0 134 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 petB gene petB petB 74413 75853 1 1441 LSC 0.000925 2 0 300 51 no 0.000000 2 0.000000 0.000925 1.000000 29.400000 IGS_081 igs petB|petD petB-petD 75854 76041 0 188 LSC 0.006206 2 0 63 244 no 0.500000 3 0.666667 0.006206 1.000000 37.000000 petD gene petD petD 76042 77243 1 1202 LSC 0.002219 4 2 60 10 no 0.500000 3 0.666667 0.002221 0.999168 36.700000 IGS_082 igs petD|rpoA petD-rpoA 77244 77447 0 204 LSC 0.012255 4 0 300 4 no 0.500000 3 0.666667 0.012255 1.000000 36.400000 rpoA gene rpoA rpoA 77448 78431 -1 984 LSC 0.003388 5 0 19 300 no 0.000000 2 0.000000 0.003388 1.000000 28.600000 IGS_083 igs rpoA|rps11 rpoA-rps11 78432 78500 0 69 LSC 0.000000 0 0 128 276 no 0.000000 1 0.000000 0.000000 1.000000 28.300000 rps11 gene rps11 rps11 78501 78917 -1 417 LSC 0.001599 1 0 197 254 no 0.000000 2 0.000000 0.001599 1.000000 37.000000 IGS_084 igs rps11|rpl36 rps11-rpl36 78918 79031 0 114 LSC 0.000000 0 1 140 140 no 0.000000 2 0.000000 0.000000 0.991228 30.100000 rpl36 gene rpl36 rpl36 79032 79145 -1 114 LSC 0.000000 0 0 254 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_085 igs rpl36|rps8 rpl36-rps8 79146 79607 0 462 LSC 0.010462 8 0 300 78 no 0.500000 3 0.666667 0.010462 1.000000 44.200000 rps8 gene rps8 rps8 79608 80012 -1 405 LSC 0.003292 2 0 133 52 no 0.000000 2 0.000000 0.003292 1.000000 26.900000 IGS_086 igs rps8|rpl14 rps8-rpl14 80013 80243 0 231 LSC 0.005772 2 0 251 144 no 0.000000 2 0.000000 0.005772 1.000000 33.200000 rpl14 gene rpl14 rpl14 80244 80612 -1 369 LSC 0.001807 1 0 39 117 no 0.000000 2 0.000000 0.001807 1.000000 24.300000 IGS_087 igs rpl14|rpl16 rpl14-rpl16 80613 80737 0 125 LSC 0.004000 1 0 224 300 no 0.250000 2 0.500000 0.004000 1.000000 41.200000 rpl16 gene rpl16 rpl16 80738 82215 -1 1478 LSC 0.002257 5 2 7 104 no 0.500000 3 0.666667 0.002258 0.998647 36.500000 IGS_088 igs rpl16|rps3 rpl16-rps3 82216 82389 0 174 LSC 0.007663 2 0 300 300 no 0.000000 2 0.000000 0.007663 1.000000 38.600000 rps3 gene rps3 rps3 82390 83046 -1 657 LSC 0.001015 1 0 25 300 no 0.000000 2 0.000000 0.001015 1.000000 27.500000 rpl22 gene rpl22 rpl22 83031 83513 -1 483 LSC 0.001380 1 0 300 300 no 0.000000 2 0.000000 0.001380 1.000000 38.400000 IGS_090 igs rpl22|rps19 rpl22-rps19 83514 83568 0 55 LSC 0.000000 0 0 50 300 no 0.000000 1 0.000000 0.000000 1.000000 22.500000 rps19 gene rps19 rps19 83569 83847 -1 279 LSC 0.000000 0 0 105 300 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 IGS_091 igs rps19|rpl2 rps19-rpl2 83848 83901 0 54 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl2 gene rpl2 rpl2 83902 85408 -1 1507 IRb 0.000442 1 0 300 300 no 0.000000 2 0.000000 0.000442 1.000000 40.300000 IGS_092 igs rpl2|rpl23 rpl2-rpl23 85409 85426 0 18 IRb 0.000000 0 0 9 300 no 0.000000 1 0.000000 NA 1.000000 19.400000 rpl23 gene rpl23 rpl23 85427 85708 -1 282 IRb 0.000000 0 0 27 300 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 IGS_093 igs rpl23|trnI rpl23-trnI 85709 85876 0 168 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_094 igs trnI|ycf2 trnI-ycf2 85951 86038 0 88 IRb 0.000000 0 0 300 225 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 86039 92908 1 6870 IRb 0.000679 8 0 300 300 no 0.500000 3 0.666667 0.000679 1.000000 43.600000 IGS_095 igs ycf2|trnL ycf2-trnL 92909 93823 0 915 IRb 0.000729 1 0 300 168 no 0.000000 2 0.000000 0.000729 1.000000 38.100000 IGS_096 igs trnL|ndhB trnL-ndhB 93905 94484 0 580 IRb 0.001149 1 0 300 300 no 0.000000 2 0.000000 0.001149 1.000000 40.300000 ndhB gene ndhB ndhB 94485 96654 -1 2170 IRb 0.000461 2 0 300 300 no 0.500000 3 0.666667 0.000461 1.000000 48.300000 IGS_097 igs ndhB|rps7 ndhB-rps7 96655 97021 0 367 IRb 0.000000 0 0 300 186 no 0.000000 1 0.000000 0.000000 1.000000 34.100000 rps7 gene rps7 rps7 97022 97489 -1 468 IRb 0.001425 1 0 300 300 no 0.000000 2 0.000000 0.001425 1.000000 38.200000 IGS_098 igs rps7|rps12 rps7-rps12 97490 97542 0 53 IRb 0.000000 0 0 281 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 97543 98337 -1 795 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_099 igs rps12|trnV rps12-trnV 98338 100257 0 1920 IRb 0.000870 3 5 300 300 no 0.500000 3 0.666667 0.000870 0.997396 49.300000 IGS_100 igs trnV|rrn16S trnV-rrn16S 100330 100560 0 231 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 100561 102051 1 1491 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_101 igs rrn16S|trnI rrn16S-trnI 102052 102349 0 298 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 102350 102386 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 103335 103369 1 35 IRb 0.000000 0 0 160 300 no 0.000000 1 0.000000 0.000000 1.000000 30.800000 IGS_104 igs trnI|trnA trnI-trnA 103370 103433 0 64 IRb 0.000000 0 0 195 300 no 0.000000 1 0.000000 0.000000 1.000000 33.400000 trnA_part1 tRNA trnA trnA 103434 103471 1 38 IRb 0.000000 0 0 259 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 104263 104297 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_107 igs trnA|rrn23S trnA-rrn23S 104298 104449 0 152 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 104450 107259 1 2810 IRb 0.000178 1 0 300 300 no 0.250000 2 0.500000 0.000178 1.000000 42.100000 IGS_108 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 107260 107357 0 98 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 107358 107460 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_109 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 107461 107707 0 247 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 107708 107829 1 122 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_110 igs rrn5S|trnR rrn5S-trnR 107830 108074 0 245 IRb 0.000000 0 0 300 238 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnR tRNA trnR trnR 108075 108148 1 74 IRb 0.000000 0 0 300 164 no 0.000000 1 0.000000 0.000000 1.000000 31.100000 IGS_111 igs trnR|trnN trnR-trnN 108149 108778 0 630 IRb 0.002116 2 0 300 300 no 0.000000 2 0.000000 0.002116 1.000000 41.300000 trnN tRNA trnN trnN 108779 108850 -1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_112 igs trnN|ycf1 trnN-ycf1 108851 109170 0 320 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.200000 ycf1 gene ycf1 ycf1 109171 110196 1 1026 IRb 0.002599 4 0 300 5 no 0.000000 2 0.000000 0.002599 1.000000 27.000000 ndhF gene ndhF ndhF 110158 112398 -1 2241 SSC 0.003793 13 0 24 130 no 0.500000 3 0.666667 0.003793 1.000000 37.100000 IGS_114 igs ndhF|rpl32 ndhF-rpl32 112399 113222 0 824 SSC 0.010328 13 3 300 178 yes 1.000000 4 1.000000 0.010347 0.997573 64.100000 rpl32 gene rpl32 rpl32 113223 113381 1 159 SSC 0.000000 0 0 28 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_115 igs rpl32|trnL rpl32-trnL 113382 114109 0 728 SSC 0.009844 11 65 187 271 yes 0.500000 3 0.666667 0.009323 0.997253 60.200000 IGS_116 igs trnL|ccsA trnL-ccsA 114196 114307 0 112 SSC 0.000000 0 0 300 73 no 0.000000 1 0.000000 0.000000 1.000000 24.200000 ccsA gene ccsA ccsA 114308 115294 1 987 SSC 0.003040 5 0 300 26 no 0.500000 3 0.666667 0.003040 1.000000 38.300000 IGS_117 igs ccsA|ndhD ccsA-ndhD 115295 115511 0 217 SSC 0.006144 2 1 33 95 no 0.000000 2 0.000000 0.006173 0.995392 25.600000 ndhD gene ndhD ndhD 115512 117032 -1 1521 SSC 0.000877 2 0 36 300 no 0.000000 2 0.000000 0.000877 1.000000 28.200000 IGS_118 igs ndhD|psaC ndhD-psaC 117033 117169 0 137 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaC gene psaC psaC 117170 117415 -1 246 SSC 0.000000 0 0 300 66 no 0.000000 1 0.000000 0.000000 1.000000 23.700000 IGS_119 igs psaC|ndhE psaC-ndhE 117416 117656 0 241 SSC 0.008299 3 0 300 141 no 0.000000 2 0.000000 0.008299 1.000000 34.600000 ndhE gene ndhE ndhE 117657 117962 -1 306 SSC 0.002179 1 0 101 134 no 0.000000 2 0.000000 0.002179 1.000000 27.800000 IGS_120 igs ndhE|ndhG ndhE-ndhG 117963 118209 0 247 SSC 0.005398 2 0 164 300 no 0.000000 2 0.000000 0.005398 1.000000 34.500000 ndhG gene ndhG ndhG 118210 118740 -1 531 SSC 0.000000 0 0 75 98 no 0.000000 1 0.000000 0.000000 1.000000 29.200000 IGS_121 igs ndhG|ndhI ndhG-ndhI 118741 119059 0 319 SSC 0.008359 4 0 300 21 no 0.000000 2 0.000000 0.008359 1.000000 26.000000 ndhI gene ndhI ndhI 119060 119578 -1 519 SSC 0.002569 2 0 49 4 no 0.000000 2 0.000000 0.002569 1.000000 25.300000 IGS_122 igs ndhI|ndhA ndhI-ndhA 119579 119663 0 85 SSC 0.015686 2 0 267 300 no 0.000000 2 0.000000 0.015686 1.000000 43.800000 ndhA gene ndhA ndhA 119664 121823 -1 2160 SSC 0.001852 6 1 29 300 no 0.000000 2 0.000000 0.001853 0.999537 27.000000 IGS_123 igs ndhA|ndhH ndhA-ndhH 121824 121824 0 1 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 ndhH gene ndhH ndhH 121825 123006 -1 1182 SSC 0.000564 1 0 300 184 no 0.000000 2 0.000000 0.000564 1.000000 39.200000 IGS_124 igs ndhH|rps15 ndhH-rps15 123007 123109 0 103 SSC 0.000000 0 0 300 81 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 rps15 gene rps15 rps15 123110 123376 -1 267 SSC 0.009988 4 0 300 9 no 0.000000 2 0.000000 0.009988 1.000000 25.800000 IGS_125 igs rps15|ycf1 rps15-ycf1 123377 123691 0 315 SSC 0.003704 2 27 29 51 no 0.500000 3 0.666667 0.004051 0.914286 36.900000 ycf1 gene ycf1 ycf1 123692 129061 -1 5370 SSC 0.006083 52 0 129 300 yes 1.000000 4 1.000000 0.006083 1.000000 51.100000 IGS_126 igs ycf1|trnN ycf1-trnN 129062 129381 0 320 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.200000 trnN tRNA trnN trnN 129382 129453 1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_127 igs trnN|trnR trnN-trnR 129454 130083 0 630 IRa 0.002116 2 0 300 300 no 0.000000 2 0.000000 0.002116 1.000000 41.300000 trnR tRNA trnR trnR 130084 130157 -1 74 IRa 0.000000 0 0 164 300 no 0.000000 1 0.000000 0.000000 1.000000 31.100000 IGS_128 igs trnR|rrn5S trnR-rrn5S 130158 130403 0 246 IRa 0.000000 0 0 238 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 130404 130524 -1 121 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_129 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 130525 130771 0 247 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 130772 130874 -1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_130 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 130875 130972 0 98 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 130973 133782 -1 2810 IRa 0.000178 1 0 300 300 no 0.250000 2 0.500000 0.000178 1.000000 42.100000 IGS_131 igs rrn23S|trnA rrn23S-trnA 133783 133934 0 152 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 133935 133969 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 134761 134798 -1 38 IRa 0.000000 0 0 300 259 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_134 igs trnA|trnI trnA-trnI 134799 134862 0 64 IRa 0.000000 0 0 300 195 no 0.000000 1 0.000000 0.000000 1.000000 33.400000 trnI_part2 tRNA trnI trnI 134863 134897 -1 35 IRa 0.000000 0 0 300 160 no 0.000000 1 0.000000 0.000000 1.000000 30.800000 trnI_part1 tRNA trnI trnI 135846 135882 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_137 igs trnI|rrn16S trnI-rrn16S 135883 136180 0 298 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 136181 137671 -1 1491 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_138 igs rrn16S|trnV rrn16S-trnV 137672 137902 0 231 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_139 igs trnV|rps12 trnV-rps12 137975 139894 0 1920 IRa 0.000870 3 5 300 300 no 0.500000 3 0.666667 0.000870 0.997396 49.300000 rps12_part2 gene rps12 rps12 139895 140689 1 795 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_140 igs rps12|rps7 rps12-rps7 140690 140742 0 53 IRa 0.000000 0 0 300 281 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 140743 141210 1 468 IRa 0.001425 1 0 300 300 no 0.000000 2 0.000000 0.001425 1.000000 38.200000 IGS_141 igs rps7|ndhB rps7-ndhB 141211 141577 0 367 IRa 0.000000 0 0 186 300 no 0.000000 1 0.000000 0.000000 1.000000 34.100000 ndhB gene ndhB ndhB 141578 143747 1 2170 IRa 0.000461 2 0 300 300 no 0.500000 3 0.666667 0.000461 1.000000 48.300000 IGS_142 igs ndhB|trnL ndhB-trnL 143748 144327 0 580 IRa 0.001149 1 0 300 300 no 0.000000 2 0.000000 0.001149 1.000000 40.300000 IGS_143 igs trnL|ycf2 trnL-ycf2 144409 145323 0 915 IRa 0.000729 1 0 168 300 no 0.000000 2 0.000000 0.000729 1.000000 38.100000 ycf2 gene ycf2 ycf2 145324 152193 -1 6870 IRa 0.000679 8 0 300 300 no 0.500000 3 0.666667 0.000679 1.000000 43.600000 IGS_144 igs ycf2|trnI ycf2-trnI 152194 152281 0 88 IRa 0.000000 0 0 225 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_145 igs trnI|rpl23 trnI-rpl23 152356 152523 0 168 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 152524 152805 1 282 IRa 0.000000 0 0 300 27 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 IGS_146 igs rpl23|rpl2 rpl23-rpl2 152806 152823 0 18 IRa 0.000000 0 0 300 9 no 0.000000 1 0.000000 NA 1.000000 19.400000 rpl2 gene rpl2 rpl2 152824 154330 1 1507 IRa 0.000442 1 0 300 289 no 0.000000 2 0.000000 0.000442 1.000000 40.300000 IGS_147 igs rpl2|trnH rpl2-trnH 154331 10 0 170 IRa 0.000000 0 8 300 119 no 0.250000 2 0.500000 0.000000 0.952941 36.600000