feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 121 193 -1 73 LSC 0.000000 0 1 39 15 no 0.000000 2 0.000000 0.000000 1.000000 21.400000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 194 493 0 300 LSC 0.031000 21 65 112 96 no 0.600000 4 0.750000 0.030452 1.000000 64.700000 psbA gene psbA psbA 494 1555 -1 1062 LSC 0.005273 12 0 11 0 no 0.400000 3 0.666667 0.005273 1.000000 36.300000 IGS_002 igs psbA|trnK-UUU psbA-trnK-UUU 1556 1785 0 230 LSC 0.015652 9 0 7 0 no 0.200000 2 0.500000 0.015652 1.000000 34.400000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1786 1821 -1 36 LSC 0.016667 1 0 4 31 no 0.000000 2 0.000000 0.016667 1.000000 30.000000 matK gene matK matK 2114 3643 -1 1530 LSC 0.015425 58 0 23 42 no 0.400000 3 0.666667 0.015425 1.000000 45.800000 IGS_005 igs matK|trnK-UUU matK-trnK-UUU 3644 4367 0 724 LSC 0.014641 24 4 4 42 no 0.400000 3 0.666667 0.014704 1.000000 44.200000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4368 4405 -1 38 LSC 0.000000 0 0 100 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_006 igs trnK-UUU|rps16 trnK-UUU-rps16 4406 4929 0 524 LSC 0.022901 28 1 138 9 no 0.400000 3 0.666667 0.022935 1.000000 48.800000 rps16 gene rps16 rps16 4930 5268 -1 339 LSC 0.012389 10 4 14 1 no 0.400000 3 0.666667 0.012506 1.000000 37.800000 IGS_007 igs rps16|trnQ-UUG rps16-trnQ-UUG 5269 6737 0 1469 LSC 0.026821 94 97 110 0 no 0.600000 4 0.750000 0.027585 0.999319 62.100000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 6738 6807 -1 70 LSC 0.022857 4 0 51 4 no 0.400000 3 0.666667 0.022857 1.000000 44.000000 IGS_008 igs trnQ-UUG|trnQ-UUG trnQ-UUG-trnQ-UUG 6808 6854 0 47 LSC 0.025532 3 4 5 36 no 0.200000 2 0.500000 0.027907 1.000000 48.100000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 6855 6926 -1 72 LSC 0.008333 1 0 7 3 no 0.000000 2 0.000000 0.008333 1.000000 24.500000 IGS_009 igs trnQ-UUG|psbK trnQ-UUG-psbK 6927 7499 0 573 LSC 0.028970 39 8 35 20 no 0.400000 3 0.666667 0.029321 1.000000 56.600000 psbK gene psbK psbK 7500 7685 1 186 LSC 0.015054 7 0 49 34 no 0.400000 3 0.666667 0.015054 1.000000 40.300000 IGS_010 igs psbK|psbI psbK-psbI 7686 8041 0 356 LSC 0.017416 15 11 48 117 no 0.400000 3 0.666667 0.017843 1.000000 47.800000 psbI gene psbI psbI 8042 8152 1 111 LSC 0.000000 0 0 60 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_011 igs psbI|trnS-GCU psbI-trnS-GCU 8153 8293 0 141 LSC 0.021277 6 6 171 105 no 0.400000 3 0.666667 0.021836 1.000000 54.100000 trnS-GCU tRNA trnS-GCU trnS-GCU 8294 8381 -1 88 LSC 0.000000 0 0 12 17 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_012 igs trnS-GCU|trnS-CGA trnS-GCU-trnS-CGA 8382 9118 0 737 LSC 0.022795 39 15 100 50 no 0.400000 3 0.666667 0.023206 1.000000 55.500000 trnS-CGA_part1 tRNA trnS-CGA trnS-CGA 9119 9149 1 31 LSC 0.000000 0 0 16 19 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 trnS-CGA_part2 tRNA trnS-CGA trnS-CGA 9834 9893 1 60 LSC 0.000000 0 0 58 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_015 igs trnS-CGA|trnR-UCU trnS-CGA-trnR-UCU 9894 10055 0 162 LSC 0.050617 20 1 118 8 no 0.600000 4 0.750000 0.050828 1.000000 66.300000 trnR-UCU tRNA trnR-UCU trnR-UCU 10056 10127 1 72 LSC 0.005556 1 0 0 8 no 0.200000 2 0.500000 0.005556 1.000000 26.700000 IGS_016 igs trnR-UCU|atpA trnR-UCU-atpA 10128 10240 0 113 LSC 0.049558 13 3 63 5 yes 1.000000 5 1.000000 0.049920 1.000000 75.800000 atpA gene atpA atpA 10241 11746 -1 1506 LSC 0.013546 46 0 20 4 no 0.600000 4 0.750000 0.013546 1.000000 46.500000 IGS_017 igs atpA|atpF atpA-atpF 11747 11812 0 66 LSC 0.033333 5 0 31 7 no 0.400000 3 0.666667 0.033333 1.000000 51.200000 atpF gene atpF atpF 11813 13119 -1 1307 LSC 0.033333 96 7 3 10 no 0.600000 4 0.750000 0.032919 1.000000 61.300000 IGS_018 igs atpF|atpH atpF-atpH 13120 13540 0 421 LSC 0.038005 36 1 4 38 yes 1.000000 5 1.000000 0.038042 1.000000 68.400000 atpH gene atpH atpH 13541 13786 -1 246 LSC 0.011382 6 0 8 15 no 0.600000 4 0.750000 0.011382 1.000000 38.800000 IGS_019 igs atpH|rpl2 atpH-rpl2 13787 15173 0 1387 LSC 0.025883 81 24 20 4 no 0.600000 4 0.750000 0.026047 1.000000 57.500000 rpl2 gene rpl2 rpl2 15174 16641 1 1468 LSC 0.022888 74 3 15 0 no 1.000000 5 1.000000 0.022907 1.000000 60.600000 IGS_020 igs rpl2|rps19 rpl2-rps19 16642 16700 0 59 LSC 0.047458 6 0 96 0 yes 1.000000 5 1.000000 0.047458 1.000000 71.400000 rps19 gene rps19 rps19 16701 16982 1 282 LSC 0.019149 12 0 11 3 no 0.600000 4 0.750000 0.019149 1.000000 44.200000 IGS_021 igs rps19|rps3 rps19-rps3 16983 17560 0 578 LSC 0.017647 22 0 3 89 no 0.600000 4 0.750000 0.017647 1.000000 48.700000 rps3 gene rps3 rps3 17561 18259 1 699 LSC 0.024893 40 0 9 21 no 0.400000 3 0.666667 0.024893 1.000000 51.500000 IGS_022 igs rps3|rpl16 rps3-rpl16 18260 18362 0 103 LSC 0.015534 4 0 14 51 no 0.200000 2 0.500000 0.015534 1.000000 35.400000 rpl16 gene rpl16 rpl16 18363 19889 1 1527 LSC 0.020432 72 48 16 11 no 1.000000 5 1.000000 0.020884 1.000000 63.300000 IGS_023 igs rpl16|rpl14 rpl16-rpl14 19890 19996 0 107 LSC 0.019626 5 3 12 17 no 0.600000 4 0.750000 0.017954 1.000000 48.800000 rpl14 gene rpl14 rpl14 19997 20365 1 369 LSC 0.017886 15 0 17 3 no 0.600000 4 0.750000 0.017886 1.000000 44.800000 IGS_024 igs rpl14|rps8 rpl14-rps8 20366 20554 0 189 LSC 0.027513 13 1 6 47 no 0.400000 3 0.666667 0.027643 1.000000 48.300000 rps8 gene rps8 rps8 20555 20947 1 393 LSC 0.009160 8 0 16 30 no 0.400000 3 0.666667 0.009160 1.000000 36.100000 IGS_025 igs rps8|rpl36 rps8-rpl36 20948 21436 0 489 LSC 0.035787 39 0 32 14 no 0.600000 4 0.750000 0.035787 1.000000 61.100000 rpl36 gene rpl36 rpl36 21437 21550 1 114 LSC 0.010526 3 0 1 15 no 0.400000 3 0.666667 0.010526 1.000000 34.400000 IGS_026 igs rpl36|rps11 rpl36-rps11 21551 21657 0 107 LSC 0.029907 7 1 44 10 no 0.600000 4 0.750000 0.030083 1.000000 53.400000 rps11 gene rps11 rps11 21658 22059 1 402 LSC 0.035075 29 0 1 3 no 0.600000 4 0.750000 0.035075 1.000000 57.000000 IGS_027 igs rps11|rpoA rps11-rpoA 22060 22139 0 80 LSC 0.062500 10 0 5 19 no 0.600000 4 0.750000 0.062500 1.000000 65.400000 rpoA gene rpoA rpoA 22140 23156 1 1017 LSC 0.020551 46 0 3 10 no 0.600000 4 0.750000 0.020551 1.000000 51.400000 IGS_028 igs rpoA|petD rpoA-petD 23157 23345 0 189 LSC 0.024339 11 5 5 6 no 0.600000 4 0.750000 0.024942 1.000000 51.600000 petD gene petD petD 23346 24520 -1 1175 LSC 0.014298 39 1 30 6 no 0.600000 4 0.750000 0.014302 1.000000 47.400000 IGS_029 igs petD|petB petD-petB 24521 24712 0 192 LSC 0.036458 16 0 23 18 no 0.600000 4 0.750000 0.036458 1.000000 58.200000 petB gene petB petB 24713 25717 -1 1005 LSC 0.015622 34 10 12 18 no 0.600000 4 0.750000 0.015496 1.000000 49.600000 IGS_030 igs petB|psbH petB-psbH 25718 26225 0 508 LSC 0.025000 28 3 52 34 no 0.600000 4 0.750000 0.025074 1.000000 55.700000 psbH gene psbH psbH 26226 26447 -1 222 LSC 0.012613 7 0 11 40 no 0.400000 3 0.666667 0.012613 1.000000 36.700000 IGS_031 igs psbH|psbN psbH-psbN 26448 26619 0 172 LSC 0.027907 11 0 20 30 no 0.400000 3 0.666667 0.027907 1.000000 48.300000 psbN gene psbN psbN 26620 26751 1 132 LSC 0.003030 1 0 5 20 no 0.200000 2 0.500000 0.003030 1.000000 25.200000 IGS_032 igs psbN|psbT psbN-psbT 26752 26822 0 71 LSC 0.022535 4 0 101 21 no 0.400000 3 0.666667 0.022535 1.000000 45.000000 psbT gene psbT psbT 26823 26924 -1 102 LSC 0.017647 4 0 4 17 no 0.400000 3 0.666667 0.017647 1.000000 39.400000 IGS_033 igs psbT|psbB psbT-psbB 26925 27140 0 216 LSC 0.020833 11 7 48 17 no 0.600000 4 0.750000 0.020342 1.000000 50.900000 psbB gene psbB psbB 27141 28667 -1 1527 LSC 0.013425 46 0 35 5 no 0.600000 4 0.750000 0.013425 1.000000 46.400000 IGS_034 igs psbB|trnV-GAC psbB-trnV-GAC 28668 29413 0 746 LSC 0.055898 88 327 53 13 yes 0.600000 4 0.750000 0.057594 1.000000 75.200000 trnV-GAC tRNA trnV-GAC trnV-GAC 29414 29485 -1 72 LSC 0.019444 3 0 3 2 no 0.400000 3 0.666667 0.019444 1.000000 40.400000 IGS_035 igs trnV-GAC|rpl20 trnV-GAC-rpl20 29486 31538 0 2053 LSC 0.188586 793 403 25 6 yes 0.600000 4 0.750000 0.202318 1.000000 75.300000 rpl20 gene rpl20 rpl20 31539 31925 1 387 LSC 0.012920 12 0 6 45 no 0.400000 3 0.666667 0.012920 1.000000 38.200000 IGS_036 igs rpl20|rps18 rpl20-rps18 31926 32238 0 313 LSC 0.021086 15 0 6 2 no 0.400000 3 0.666667 0.021086 1.000000 42.200000 rps18 gene rps18 rps18 32239 32574 -1 336 LSC 0.023214 18 12 5 32 no 0.400000 3 0.666667 0.022310 1.000000 48.800000 IGS_037 igs rps18|rpl33 rps18-rpl33 32575 32701 0 127 LSC 0.033858 9 20 6 10 no 0.600000 4 0.750000 0.034822 0.992126 59.500000 rpl33 gene rpl33 rpl33 32702 32896 -1 195 LSC 0.013333 6 0 44 2 no 0.400000 3 0.666667 0.013333 1.000000 36.200000 IGS_038 igs rpl33|psaJ rpl33-psaJ 32897 33364 0 468 LSC 0.023077 25 9 76 128 no 0.400000 3 0.666667 0.023429 1.000000 54.700000 psaJ gene psaJ psaJ 33365 33499 -1 135 LSC 0.002963 1 0 32 27 no 0.200000 2 0.500000 0.002963 1.000000 26.800000 IGS_039 igs psaJ|trnP-UGG psaJ-trnP-UGG 33500 33829 0 330 LSC 0.014545 11 20 6 26 no 0.400000 3 0.666667 0.015100 1.000000 43.900000 trnP-UGG tRNA trnP-UGG trnP-UGG 33830 33903 1 74 LSC 0.005405 1 0 16 121 no 0.200000 2 0.500000 0.005405 1.000000 27.800000 IGS_040 igs trnP-UGG|trnW-CCA trnP-UGG-trnW-CCA 33904 33949 0 46 LSC 0.000000 0 0 47 75 no 0.000000 1 0.000000 0.000000 1.000000 22.300000 trnW-CCA tRNA trnW-CCA trnW-CCA 33950 34023 1 74 LSC 0.000000 0 0 93 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_041 igs trnW-CCA|petG trnW-CCA-petG 34024 34136 0 113 LSC 0.053982 13 0 167 35 no 0.400000 3 0.666667 0.053982 1.000000 63.900000 petG gene petG petG 34137 34250 -1 114 LSC 0.003509 1 0 2 2 no 0.200000 2 0.500000 0.003509 1.000000 25.300000 IGS_042 igs petG|petL petG-petL 34251 34426 0 176 LSC 0.013636 6 0 78 69 no 0.200000 2 0.500000 0.013636 1.000000 38.100000 petL gene petL petL 34427 34522 -1 96 LSC 0.004167 1 0 23 6 no 0.200000 2 0.500000 0.004167 1.000000 26.100000 IGS_043 igs petL|psbE petL-psbE 34523 35735 0 1213 LSC 0.020115 55 139 26 113 no 0.600000 4 0.750000 0.021419 1.000000 58.500000 psbE gene psbE psbE 35736 35987 1 252 LSC 0.003175 2 0 79 6 no 0.200000 2 0.500000 0.003175 1.000000 25.400000 IGS_044 igs psbE|psbF psbE-psbF 35988 35996 0 9 LSC 0.044444 1 0 102 57 no 0.200000 2 0.500000 NA 1.000000 59.300000 psbF gene psbF psbF 35997 36116 1 120 LSC 0.005000 1 0 2 157 no 0.000000 2 0.000000 0.005000 1.000000 22.200000 IGS_045 igs psbF|psbJ psbF-psbJ 36117 36395 0 279 LSC 0.007885 5 0 62 8 no 0.400000 3 0.666667 0.007885 1.000000 32.600000 psbJ gene psbJ psbJ 36396 36518 1 123 LSC 0.029268 8 0 67 14 no 0.400000 3 0.666667 0.029268 1.000000 48.600000 IGS_046 igs psbJ|trnT-UGU psbJ-trnT-UGU 36519 38772 0 2254 LSC 0.010810 56 1518 0 4 no 0.600000 4 0.750000 0.030641 0.999556 42.600000 trnT-UGU tRNA trnT-UGU trnT-UGU 38773 38845 -1 73 LSC 0.005479 1 0 21 18 no 0.200000 2 0.500000 0.005479 1.000000 28.000000 IGS_047 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 38846 39595 0 750 LSC 0.041067 69 17 68 51 yes 0.400000 3 0.666667 0.041079 1.000000 69.000000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 39596 39630 1 35 LSC 0.000000 0 0 4 16 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 40143 40192 1 50 LSC 0.012000 1 0 10 26 no 0.000000 2 0.000000 0.012000 1.000000 27.400000 IGS_050 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 40193 40535 0 343 LSC 0.009913 8 42 33 77 no 0.400000 3 0.666667 0.010930 1.000000 42.500000 trnF-GAA tRNA trnF-GAA trnF-GAA 40536 40608 1 73 LSC 0.000000 0 0 62 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_051 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 40609 41190 0 582 LSC 0.025945 35 3 135 1 no 0.600000 4 0.750000 0.026011 1.000000 55.700000 ndhJ gene ndhJ ndhJ 41191 41667 -1 477 LSC 0.007128 8 0 19 27 no 0.400000 3 0.666667 0.007128 1.000000 36.700000 IGS_052 igs ndhJ|ndhK ndhJ-ndhK 41668 41777 0 110 LSC 0.040000 11 4 8 19 no 0.400000 3 0.666667 0.041407 1.000000 61.700000 ndhK gene ndhK ndhK 41778 42449 -1 672 LSC 0.010714 16 0 27 184 no 0.400000 3 0.666667 0.010714 1.000000 42.300000 IGS_053 igs ndhK|ndhC ndhK-ndhC 42450 42498 0 49 LSC 0.000000 0 0 59 135 no 0.000000 1 0.000000 0.000000 1.000000 23.200000 ndhC gene ndhC ndhC 42499 42861 -1 363 LSC 0.006061 5 0 108 0 no 0.400000 3 0.666667 0.006061 1.000000 32.000000 IGS_054 igs ndhC|trnV-UAC ndhC-trnV-UAC 42862 43709 0 848 LSC 0.034198 67 9 6 70 no 0.400000 3 0.666667 0.034485 1.000000 59.500000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 43710 43744 -1 35 LSC 0.000000 0 0 9 35 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 44328 44365 -1 38 LSC 0.010526 1 0 32 12 no 0.200000 2 0.500000 0.010526 1.000000 31.400000 IGS_057 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 44366 44561 0 196 LSC 0.046939 21 8 4 80 yes 0.600000 4 0.750000 0.047568 1.000000 68.800000 trnM-CAU tRNA trnM-CAU trnM-CAU 44562 44634 1 73 LSC 0.000000 0 0 5 7 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_058 igs trnM-CAU|trnM-CAU trnM-CAU-trnM-CAU 44635 44863 0 229 LSC 0.062300 31 6 78 78 yes 0.600000 4 0.750000 0.060105 1.000000 74.000000 trnM-CAU tRNA trnM-CAU trnM-CAU 44864 44937 -1 74 LSC 0.000000 0 0 1 4 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_059 igs trnM-CAU|psaA trnM-CAU-psaA 44938 45412 0 475 LSC 0.025684 28 0 75 38 no 0.600000 4 0.750000 0.025684 1.000000 55.400000 psaA gene psaA psaA 45413 47665 1 2253 LSC 0.011718 61 0 79 42 no 0.600000 4 0.750000 0.011718 1.000000 46.500000 IGS_060 igs psaA|psaB psaA-psaB 47666 47690 0 25 LSC 0.000000 0 0 33 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 psaB gene psaB psaB 47691 49895 1 2205 LSC 0.014921 72 0 58 5 no 0.600000 4 0.750000 0.014921 1.000000 46.000000 IGS_061 igs psaB|rps14 psaB-rps14 49896 50021 0 126 LSC 0.046032 13 0 21 41 no 0.400000 3 0.666667 0.046032 1.000000 61.000000 rps14 gene rps14 rps14 50022 50315 1 294 LSC 0.019728 14 0 24 12 no 0.600000 4 0.750000 0.019728 1.000000 45.700000 IGS_062 igs rps14|trnM-CAU rps14-trnM-CAU 50316 50481 0 166 LSC 0.034940 13 0 9 2 no 0.600000 4 0.750000 0.034940 1.000000 55.700000 trnM-CAU tRNA trnM-CAU trnM-CAU 50482 50555 1 74 LSC 0.016216 3 0 9 1 no 0.400000 3 0.666667 0.016216 1.000000 38.700000 IGS_063 igs trnM-CAU|trnG-GCC trnM-CAU-trnG-GCC 50556 50733 0 178 LSC 0.060112 23 2 0 142 no 0.600000 4 0.750000 0.060470 1.000000 66.300000 trnG-GCC tRNA trnG-GCC trnG-GCC 50734 50804 -1 71 LSC 0.000000 0 0 8 71 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_064 igs trnG-GCC|psbZ trnG-GCC-psbZ 50805 51086 0 282 LSC 0.039716 24 0 79 18 no 0.600000 4 0.750000 0.039716 1.000000 59.900000 psbZ gene psbZ psbZ 51087 51275 -1 189 LSC 0.013757 6 0 3 6 no 0.400000 3 0.666667 0.013757 1.000000 36.600000 IGS_065 igs psbZ|trnS-UGA psbZ-trnS-UGA 51276 51604 0 329 LSC 0.030395 22 9 59 66 no 0.600000 4 0.750000 0.030823 1.000000 60.300000 trnS-UGA tRNA trnS-UGA trnS-UGA 51605 51697 1 93 LSC 0.004301 1 2 12 22 no 0.200000 2 0.500000 0.004396 1.000000 29.200000 IGS_066 igs trnS-UGA|psbC trnS-UGA-psbC 51698 51875 0 178 LSC 0.028090 11 0 26 1 no 0.400000 3 0.666667 0.028090 1.000000 46.700000 psbC gene psbC psbC 51876 53297 -1 1422 LSC 0.013150 39 0 10 64 no 0.600000 4 0.750000 0.013150 1.000000 46.300000 psbD gene psbD psbD 53245 54306 -1 1062 LSC 0.008851 22 0 42 0 no 0.600000 4 0.750000 0.008851 1.000000 42.800000 IGS_068 igs psbD|trnE-UUC psbD-trnE-UUC 54307 56216 0 1910 LSC 0.024974 109 24 32 73 no 1.000000 5 1.000000 0.024519 1.000000 65.100000 trnE-UUC tRNA trnE-UUC trnE-UUC 56217 56289 1 73 LSC 0.000000 0 0 6 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_069 igs trnE-UUC|trnY-GUA trnE-UUC-trnY-GUA 56290 56348 0 59 LSC 0.050847 7 0 79 129 yes 0.400000 3 0.666667 0.050847 1.000000 67.200000 trnY-GUA tRNA trnY-GUA trnY-GUA 56349 56432 1 84 LSC 0.000000 0 0 5 45 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_070 igs trnY-GUA|trnD-GUC trnY-GUA-trnD-GUC 56433 56532 0 100 LSC 0.016000 4 9 89 81 no 0.400000 3 0.666667 0.017286 1.000000 50.200000 trnD-GUC tRNA trnD-GUC trnD-GUC 56533 56606 1 74 LSC 0.000000 0 0 31 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_071 igs trnD-GUC|psbJ trnD-GUC-psbJ 56607 58294 0 1688 LSC 0.149585 586 551 105 8 yes 0.600000 4 0.750000 0.197598 1.000000 74.900000 psbJ gene psbJ psbJ 58295 58417 1 123 LSC 0.026016 7 0 23 14 no 0.400000 3 0.666667 0.026016 1.000000 46.100000 IGS_072 igs psbJ|psbM psbJ-psbM 58418 59234 0 817 LSC 0.022154 41 19 27 53 no 0.400000 3 0.666667 0.022642 1.000000 53.400000 psbM gene psbM psbM 59235 59339 1 105 LSC 0.003810 1 0 18 21 no 0.200000 2 0.500000 0.003810 1.000000 26.800000 IGS_073 igs psbM|petN psbM-petN 59340 59852 0 513 LSC 0.026511 32 2 51 139 no 0.400000 3 0.666667 0.026603 1.000000 54.700000 petN gene petN petN 59853 59942 -1 90 LSC 0.000000 0 0 10 49 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_074 igs petN|trnC-GCA petN-trnC-GCA 59943 60758 0 816 LSC 0.024632 48 21 100 66 no 0.600000 4 0.750000 0.024897 1.000000 62.600000 trnC-GCA tRNA trnC-GCA trnC-GCA 60759 60829 -1 71 LSC 0.005634 1 0 7 54 no 0.200000 2 0.500000 0.005634 1.000000 27.300000 IGS_075 igs trnC-GCA|rbcL trnC-GCA-rbcL 60830 62398 0 1569 LSC 0.030274 110 22 4 59 no 0.400000 3 0.666667 0.030608 1.000000 56.700000 rbcL gene rbcL rbcL 62399 63826 -1 1428 LSC 0.007143 24 0 18 9 no 0.400000 3 0.666667 0.007143 1.000000 38.500000 IGS_076 igs rbcL|atpB rbcL-atpB 63827 64634 0 808 LSC 0.032426 60 1 20 14 no 0.400000 3 0.666667 0.032194 1.000000 57.600000 atpB gene atpB atpB 64635 66131 1 1497 LSC 0.009753 34 0 4 52 no 0.400000 3 0.666667 0.009753 1.000000 40.000000 atpE gene atpE atpE 66128 66529 1 402 LSC 0.011940 11 0 160 6 no 0.400000 3 0.666667 0.011940 1.000000 37.600000 IGS_078 igs atpE|ycf4 atpE-ycf4 66530 67461 0 932 LSC 0.019957 45 6 3 37 no 0.400000 3 0.666667 0.020063 1.000000 48.500000 ycf4 gene ycf4 ycf4 67462 68016 1 555 LSC 0.007207 9 0 30 0 no 0.400000 3 0.666667 0.007207 1.000000 36.800000 IGS_079 igs ycf4|cemA ycf4-cemA 68017 68971 0 955 LSC 0.027644 63 16 176 43 no 0.400000 3 0.666667 0.028040 1.000000 58.400000 cemA gene cemA cemA 68972 69664 1 693 LSC 0.014430 24 0 14 4 no 0.400000 3 0.666667 0.014430 1.000000 43.600000 IGS_080 igs cemA|petA cemA-petA 69665 69867 0 203 LSC 0.016749 8 0 36 9 no 0.400000 3 0.666667 0.016749 1.000000 39.400000 petA gene petA petA 69868 70830 1 963 LSC 0.008827 20 0 50 17 no 0.400000 3 0.666667 0.008827 1.000000 40.300000 IGS_081 igs petA|rps4 petA-rps4 70831 71658 0 828 LSC 0.026449 48 130 60 65 no 0.400000 3 0.666667 0.026670 1.000000 61.400000 rps4 gene rps4 rps4 71659 72267 1 609 LSC 0.016913 23 0 9 31 no 0.400000 3 0.666667 0.016913 1.000000 45.500000 IGS_082 igs rps4|trnS-GGA rps4-trnS-GGA 72268 72564 0 297 LSC 0.011448 8 26 24 0 no 0.400000 3 0.666667 0.012352 1.000000 40.500000 trnS-GGA tRNA trnS-GGA trnS-GGA 72565 72651 -1 87 LSC 0.004598 1 0 1 4 no 0.200000 2 0.500000 0.004598 1.000000 26.100000 IGS_083 igs trnS-GGA|ycf3 trnS-GGA-ycf3 72652 73503 0 852 LSC 0.026643 53 22 86 19 no 0.400000 3 0.666667 0.027297 1.000000 56.600000 ycf3 gene ycf3 ycf3 73504 75537 1 2034 LSC 0.021583 98 5 16 5 no 1.000000 5 1.000000 0.021614 1.000000 59.000000 IGS_084 igs ycf3|rpoB ycf3-rpoB 75538 76804 0 1267 LSC 0.033070 98 142 42 9 no 0.600000 4 0.750000 0.035809 1.000000 67.000000 rpoB gene rpoB rpoB 76805 79999 1 3195 LSC 0.020876 145 0 15 7 no 0.600000 4 0.750000 0.020876 1.000000 48.400000 IGS_085 igs rpoB|rpoC1 rpoB-rpoC1 80000 80025 0 26 LSC 0.061538 4 0 48 47 no 0.200000 2 0.500000 0.061538 1.000000 61.000000 rpoC1 gene rpoC1 rpoC1 80026 82836 1 2811 LSC 0.027357 169 11 2 6 no 1.000000 5 1.000000 0.027428 1.000000 61.400000 IGS_086 igs rpoC1|rpoC2 rpoC1-rpoC2 82837 83005 0 169 LSC 0.036292 13 3 0 16 no 0.600000 4 0.750000 0.031111 1.000000 57.900000 rpoC2 gene rpoC2 rpoC2 83006 87181 1 4176 LSC 0.028879 271 0 13 13 no 0.600000 4 0.750000 0.028879 1.000000 53.400000 IGS_087 igs rpoC2|rps2 rpoC2-rps2 87182 87410 0 229 LSC 0.024454 13 0 4 30 no 0.400000 3 0.666667 0.024454 1.000000 44.700000 rps2 gene rps2 rps2 87411 88154 1 744 LSC 0.028226 48 0 53 9 no 0.600000 4 0.750000 0.028226 1.000000 57.700000 IGS_088 igs rps2|atpI rps2-atpI 88155 88345 0 191 LSC 0.027225 13 0 0 8 no 0.600000 4 0.750000 0.027225 1.000000 50.800000 atpI gene atpI atpI 88346 89089 1 744 LSC 0.019892 33 0 19 107 no 0.600000 4 0.750000 0.019892 1.000000 52.200000 IGS_089 igs atpI|rps12 atpI-rps12 89090 90048 0 959 LSC 0.020959 47 3 60 11 no 0.600000 4 0.750000 0.020782 1.000000 53.000000 rps12_part2 gene rps12 rps12 90049 90862 1 814 LSC 0.008600 16 9 88 1 no 0.600000 4 0.750000 0.008653 1.000000 43.900000 IGS_090 igs rps12|rps7 rps12-rps7 90863 90915 0 53 LSC 0.015094 2 0 138 15 no 0.200000 2 0.500000 0.015094 1.000000 35.100000 rps7 gene rps7 rps7 90916 91383 1 468 LSC 0.017094 18 0 41 4 no 0.400000 3 0.666667 0.017094 1.000000 42.600000 IGS_091 igs rps7|ndhB rps7-ndhB 91384 91632 0 249 LSC 0.024096 14 13 6 52 no 0.400000 3 0.666667 0.025291 1.000000 50.500000 ndhB gene ndhB ndhB 91633 93839 1 2207 LSC 0.026914 132 9 0 8 no 0.600000 4 0.750000 0.026969 1.000000 54.800000 IGS_092 igs ndhB|trnM-CAU ndhB-trnM-CAU 93840 94329 0 490 LSC 0.116122 138 24 24 83 yes 0.400000 3 0.666667 0.121295 1.000000 72.800000 trnM-CAU tRNA trnM-CAU trnM-CAU 94330 94403 -1 74 LSC 0.000000 0 0 1 9 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_093 igs trnM-CAU|trnL-CAA trnM-CAU-trnL-CAA 94404 102495 0 8092 LSC 0.067080 1274 667 75 14 yes 0.600000 4 0.750000 0.067451 0.996663 71.600000 trnL-CAA tRNA trnL-CAA trnL-CAA 102496 102576 -1 81 IRb 0.004938 1 0 127 6 no 0.200000 2 0.500000 0.004938 1.000000 26.700000 IGS_094 igs trnL-CAA|rrn16S trnL-CAA-rrn16S 102577 103192 0 616 IRb 0.010714 15 0 66 127 no 0.400000 3 0.666667 0.010714 1.000000 45.300000 rrn16S rRNA rrn16S rrn16S 103193 104677 1 1485 IRb 0.003098 10 1 14 247 no 0.400000 3 0.666667 0.003100 1.000000 35.900000 IGS_095 igs rrn16S|trnI rrn16S-trnI 104678 104974 0 297 IRb 0.001347 1 0 207 133 no 0.200000 2 0.500000 0.001347 1.000000 33.500000 trnI_part1 tRNA trnI trnI 104975 105007 1 33 IRb 0.000000 0 0 49 100 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 trnI_part2 tRNA trnI trnI 105942 105981 1 40 IRb 0.000000 0 0 97 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_098 igs trnI|trnA-UGC trnI-trnA-UGC 105982 106053 0 72 IRb 0.011111 2 0 137 300 no 0.200000 2 0.500000 0.011111 1.000000 41.200000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 106054 106090 1 37 IRb 0.000000 0 0 51 300 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 106900 106935 1 36 IRb 0.000000 0 0 24 54 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_101 igs trnA-UGC|rrn23S trnA-UGC-rrn23S 106936 107083 0 148 IRb 0.005405 2 0 60 300 no 0.400000 3 0.666667 0.005405 1.000000 34.900000 rrn23S rRNA rrn23S rrn23S 107084 110049 1 2966 IRb 0.003001 21 32 72 40 no 0.400000 3 0.666667 0.002959 1.000000 35.900000 IGS_102 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 110050 110131 0 82 IRb 0.019512 4 0 300 300 no 0.200000 2 0.500000 0.019512 1.000000 52.400000 rrn4.5S rRNA rrn4.5S rrn4.5S 110132 110234 1 103 IRb 0.000000 0 0 7 300 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_103 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 110235 110451 0 217 IRb 0.000000 0 3 110 153 no 0.200000 2 0.500000 0.000000 1.000000 32.400000 rrn5S rRNA rrn5S rrn5S 110452 110572 1 121 IRb 0.000000 0 0 300 32 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_104 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 110573 110814 0 242 IRb 0.005785 3 0 300 45 no 0.400000 3 0.666667 0.005785 1.000000 33.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 110815 110888 1 74 IRb 0.008108 1 0 101 48 no 0.000000 2 0.000000 0.008108 1.000000 27.700000 IGS_105 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 110889 111122 0 234 IRb 0.007692 4 0 28 248 no 0.400000 3 0.666667 0.007692 1.000000 33.900000 trnN-GUU tRNA trnN-GUU trnN-GUU 111123 111194 -1 72 IRb 0.000000 0 0 37 176 no 0.000000 1 0.000000 0.000000 1.000000 21.500000 IGS_106 igs trnN-GUU|rps12 trnN-GUU-rps12 111195 116471 0 5277 IRb 0.009077 112 2198 109 20 no 0.400000 3 0.666667 0.013825 1.000000 37.100000 rps12_part1 gene rps12 rps12 116472 116585 1 114 IRb 0.010526 2 0 15 62 no 0.000000 2 0.000000 0.010526 1.000000 26.800000 IGS_107 igs rps12|ndhH rps12-ndhH 116586 126725 0 10140 IRb 0.065799 1480 1804 5 26 yes 0.400000 3 0.666667 0.070673 1.000000 66.700000 ndhH gene ndhH ndhH 126726 127907 1 1182 IRb 0.002200 6 0 62 60 no 0.400000 3 0.666667 0.002200 1.000000 38.600000 IGS_108 igs ndhH|ndhA ndhH-ndhA 127908 127908 0 1 IRb 0.000000 0 0 156 59 no 0.000000 1 0.000000 NA 1.000000 23.200000 ndhA gene ndhA ndhA 127909 130026 1 2118 IRb 0.004438 22 9 157 247 no 0.600000 4 0.750000 0.004455 1.000000 50.500000 IGS_109 igs ndhA|ndhI ndhA-ndhI 130027 130108 0 82 IRb 0.000000 0 0 216 165 no 0.000000 1 0.000000 0.000000 1.000000 31.100000 ndhI gene ndhI ndhI 130109 130612 1 504 IRb 0.003175 4 0 298 38 no 0.200000 2 0.500000 0.003175 1.000000 32.000000 IGS_110 igs ndhI|ndhG ndhI-ndhG 130613 131048 0 436 IRb 0.018349 19 22 4 65 no 0.400000 3 0.666667 0.019251 1.000000 49.000000 ndhG gene ndhG ndhG 131049 131579 1 531 IRb 0.003013 3 0 22 8 no 0.400000 3 0.666667 0.003013 1.000000 33.700000 IGS_111 igs ndhG|ndhE ndhG-ndhE 131580 131798 0 219 IRb 0.023744 12 0 300 167 no 0.400000 3 0.666667 0.023744 1.000000 56.300000 ndhE gene ndhE ndhE 131799 131963 1 165 IRb 0.000000 0 0 14 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_112 igs ndhE|ndhF ndhE-ndhF 131964 132177 0 214 SSC 0.042523 21 59 179 10 no 0.400000 3 0.666667 0.053942 1.000000 62.100000 ndhF gene ndhF ndhF 132178 134400 -1 2223 SSC 0.024112 127 3 23 18 no 0.400000 3 0.666667 0.024034 1.000000 50.500000 IGS_113 igs ndhF|rpl32 ndhF-rpl32 134401 135229 0 829 SSC 0.034620 64 251 3 90 no 0.600000 4 0.750000 0.040602 1.000000 66.000000 rpl32 gene rpl32 rpl32 135230 135436 1 207 SSC 0.018357 9 0 17 0 no 0.400000 3 0.666667 0.018357 1.000000 39.900000 IGS_114 igs rpl32|trnL-UAG rpl32-trnL-UAG 135437 136019 0 583 SSC 0.048714 65 36 20 99 yes 0.400000 3 0.666667 0.051300 1.000000 73.900000 trnL-UAG tRNA trnL-UAG trnL-UAG 136020 136099 1 80 SSC 0.000000 0 0 25 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_115 igs trnL-UAG|ccsA trnL-UAG-ccsA 136100 136199 0 100 SSC 0.030000 6 0 105 10 no 0.400000 3 0.666667 0.030000 1.000000 48.000000 ccsA gene ccsA ccsA 136200 137150 1 951 SSC 0.022713 50 0 24 9 no 0.400000 3 0.666667 0.022713 1.000000 50.000000 IGS_116 igs ccsA|ndhD ccsA-ndhD 137151 137423 0 273 SSC 0.058974 35 22 5 3 yes 0.400000 3 0.666667 0.057089 1.000000 67.200000 ndhD gene ndhD ndhD 137424 138965 -1 1542 SSC 0.019196 71 0 8 19 no 0.400000 3 0.666667 0.019196 1.000000 47.400000 IGS_117 igs ndhD|psaC ndhD-psaC 138966 139053 0 88 SSC 0.037500 7 0 10 9 no 0.400000 3 0.666667 0.037500 1.000000 53.700000 psaC gene psaC psaC 139054 139299 -1 246 SSC 0.020732 12 0 3 3 no 0.400000 3 0.666667 0.020732 1.000000 41.900000 IGS_118 igs psaC|ndhE psaC-ndhE 139300 139560 0 261 SSC 0.049042 31 3 5 12 no 0.400000 3 0.666667 0.049546 1.000000 62.600000 ndhE gene ndhE ndhE 139561 139866 -1 306 IRa 0.011111 8 0 0 14 no 0.400000 3 0.666667 0.011111 1.000000 34.600000 IGS_119 igs ndhE|ndhG ndhE-ndhG 139867 140085 0 219 IRa 0.023744 12 0 161 300 no 0.400000 3 0.666667 0.023744 1.000000 55.900000 ndhG gene ndhG ndhG 140086 140616 -1 531 IRa 0.003013 3 0 8 22 no 0.400000 3 0.666667 0.003013 1.000000 33.700000 IGS_120 igs ndhG|ndhI ndhG-ndhI 140617 141052 0 436 IRa 0.018349 19 24 65 4 no 0.400000 3 0.666667 0.019337 1.000000 49.000000 ndhI gene ndhI ndhI 141053 141556 -1 504 IRa 0.003175 4 0 38 298 no 0.200000 2 0.500000 0.003175 1.000000 32.000000 IGS_121 igs ndhI|ndhA ndhI-ndhA 141557 141638 0 82 IRa 0.000000 0 0 165 216 no 0.000000 1 0.000000 0.000000 1.000000 31.100000 ndhA gene ndhA ndhA 141639 143756 -1 2118 IRa 0.004674 23 9 247 157 no 0.600000 4 0.750000 0.004597 1.000000 50.700000 IGS_122 igs ndhA|ndhH ndhA-ndhH 143757 143757 0 1 IRa 0.000000 0 0 59 156 no 0.000000 1 0.000000 NA 1.000000 23.200000 ndhH gene ndhH ndhH 143758 144939 -1 1182 IRa 0.002200 6 0 60 62 no 0.400000 3 0.666667 0.002200 1.000000 38.600000 IGS_123 igs ndhH|rps12 ndhH-rps12 144940 155079 0 10140 IRa 0.065276 1469 1814 26 5 yes 0.600000 4 0.750000 0.070182 1.000000 70.400000 rps12_part1 gene rps12 rps12 155080 155193 -1 114 IRa 0.010526 2 0 62 15 no 0.000000 2 0.000000 0.010526 1.000000 26.800000 IGS_124 igs rps12|trnN-GUU rps12-trnN-GUU 155194 160470 0 5277 IRa 0.009475 116 2198 20 109 no 0.400000 3 0.666667 0.014248 1.000000 37.400000 trnN-GUU tRNA trnN-GUU trnN-GUU 160471 160542 1 72 IRa 0.000000 0 0 176 37 no 0.000000 1 0.000000 0.000000 1.000000 21.500000 IGS_125 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 160543 160776 0 234 IRa 0.007692 4 0 248 28 no 0.400000 3 0.666667 0.007692 1.000000 33.900000 trnR-ACG tRNA trnR-ACG trnR-ACG 160777 160850 -1 74 IRa 0.008108 1 0 48 101 no 0.000000 2 0.000000 0.008108 1.000000 27.700000 IGS_126 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 160851 161092 0 242 IRa 0.005785 3 0 45 300 no 0.400000 3 0.666667 0.005785 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 161093 161213 -1 121 IRa 0.000000 0 0 32 300 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_127 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 161214 161430 0 217 IRa 0.000000 0 3 153 110 no 0.200000 2 0.500000 0.000000 1.000000 32.400000 rrn4.5S rRNA rrn4.5S rrn4.5S 161431 161533 -1 103 IRa 0.000000 0 0 300 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_128 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 161534 161615 0 82 IRa 0.019512 4 0 300 300 no 0.200000 2 0.500000 0.019512 1.000000 52.400000 rrn23S rRNA rrn23S rrn23S 161616 164581 -1 2966 IRa 0.003001 21 32 40 72 no 0.400000 3 0.666667 0.002959 1.000000 35.900000 IGS_129 igs rrn23S|trnA-UGC rrn23S-trnA-UGC 164582 164729 0 148 IRa 0.005405 2 0 300 60 no 0.400000 3 0.666667 0.005405 1.000000 34.900000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 164730 164765 -1 36 IRa 0.000000 0 0 54 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 165575 165611 -1 37 IRa 0.000000 0 0 300 51 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 IGS_132 igs trnA-UGC|trnI trnA-UGC-trnI 165612 165683 0 72 IRa 0.011111 2 0 300 137 no 0.200000 2 0.500000 0.011111 1.000000 41.200000 trnI_part2 tRNA trnI trnI 165684 165723 -1 40 IRa 0.000000 0 0 19 97 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 trnI_part1 tRNA trnI trnI 166658 166690 -1 33 IRa 0.000000 0 0 100 49 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_135 igs trnI|rrn16S trnI-rrn16S 166691 166987 0 297 IRa 0.001347 1 0 133 207 no 0.200000 2 0.500000 0.001347 1.000000 33.500000 rrn16S rRNA rrn16S rrn16S 166988 168472 -1 1485 IRa 0.003098 10 1 247 14 no 0.400000 3 0.666667 0.003100 1.000000 35.900000 IGS_136 igs rrn16S|trnL-CAA rrn16S-trnL-CAA 168473 169088 0 616 IRa 0.010714 15 0 127 66 no 0.400000 3 0.666667 0.010714 1.000000 45.300000 trnL-CAA tRNA trnL-CAA trnL-CAA 169089 169169 1 81 IRa 0.004938 1 0 6 127 no 0.200000 2 0.500000 0.004938 1.000000 26.700000 IGS_137 igs trnL-CAA|trnH-GUG trnL-CAA-trnH-GUG 169170 120 0 292 IRa 0.018493 13 6 14 88 no 0.400000 3 0.666667 0.018714 1.000000 43.600000