feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score matK gene matK matK 1434 2459 -1 1026 LSC 0.041856 132 0 2 9 no 0.777778 8 0.875000 0.041856 1.000000 71.100000 IGS_001 igs matK|rps16 matK-rps16 2460 3607 0 1148 LSC 0.056718 187 31 5 8 yes 1.000000 9 1.000000 0.056593 0.982578 81.700000 rps16 gene rps16 rps16 3608 4669 -1 1062 LSC 0.047879 148 31 0 3 no 0.777778 8 0.875000 0.047783 0.990584 76.800000 IGS_002 igs rps16|trnQ-UUG rps16-trnQ-UUG 4670 6593 0 1924 LSC 0.023347 140 18 1 27 no 1.000000 9 1.000000 0.023224 0.996362 63.500000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 6594 6665 -1 72 LSC 0.003086 1 0 3 2 no 0.111111 2 0.500000 0.003086 1.000000 24.100000 IGS_003 igs trnQ-UUG|psbK trnQ-UUG-psbK 6666 6994 0 329 LSC 0.043617 42 2 44 8 no 0.777778 8 0.875000 0.042260 1.000000 67.400000 psbK gene psbK psbK 6995 7171 1 177 LSC 0.031387 17 0 22 4 no 0.777778 8 0.875000 0.031387 1.000000 59.800000 IGS_004 igs psbK|psbI psbK-psbI 7172 7580 0 409 LSC 0.075350 92 16 38 14 no 0.777778 8 0.875000 0.074090 0.997555 76.300000 psbI gene psbI psbI 7581 7691 1 111 LSC 0.024525 8 0 0 0 no 0.333333 6 0.500000 0.024525 1.000000 45.000000 IGS_005 igs psbI|trnS-GCU psbI-trnS-GCU 7692 7764 0 73 LSC 0.069254 13 4 0 7 no 0.777778 8 0.875000 0.070842 1.000000 74.200000 trnS-GCU tRNA trnS-GCU trnS-GCU 7765 7852 -1 88 LSC 0.002525 1 0 4 2 no 0.111111 2 0.500000 0.002525 1.000000 23.500000 IGS_006 igs trnS-GCU|ycf12 trnS-GCU-ycf12 7853 8389 0 537 LSC 0.073269 115 39 80 1 yes 0.777778 8 0.875000 0.072614 0.988827 78.900000 ycf12 gene ycf12 ycf12 8390 8509 1 120 LSC 0.046759 18 0 2 5 no 0.777778 8 0.875000 0.046759 1.000000 67.000000 IGS_007 igs ycf12|trnG-UCC ycf12-trnG-UCC 8510 8670 0 161 LSC 0.088041 44 6 1 36 no 0.777778 8 0.875000 0.088466 1.000000 72.800000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 8671 8693 1 23 LSC 0.000000 0 0 1 13 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 9572 9619 1 48 LSC 0.000000 0 0 28 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_010 igs trnG-UCC|trnR-UCU trnG-UCC-trnR-UCU 9620 9768 0 149 LSC 0.039816 18 18 76 57 no 0.777778 8 0.875000 0.040435 1.000000 73.400000 trnR-UCU tRNA trnR-UCU trnR-UCU 9769 9840 1 72 LSC 0.003086 1 0 6 11 no 0.111111 2 0.500000 0.003086 1.000000 24.400000 IGS_011 igs trnR-UCU|atpF trnR-UCU-atpF 9841 11572 0 1732 LSC 0.023034 121 16 14 3 no 1.000000 9 1.000000 0.022968 0.997691 63.600000 atpF gene atpF atpF 11573 12846 -1 1274 LSC 0.023766 93 4 3 8 no 0.777778 8 0.875000 0.023661 1.000000 60.000000 IGS_012 igs atpF|atpH atpF-atpH 12847 13205 0 359 LSC 0.047100 52 11 1 18 no 0.777778 8 0.875000 0.046255 0.986072 71.700000 atpH gene atpH atpH 13206 13451 -1 246 LSC 0.019761 15 0 6 2 no 0.777778 8 0.875000 0.019761 1.000000 50.000000 IGS_013 igs atpH|atpI atpH-atpI 13452 14188 0 737 LSC 0.058451 129 11 1 12 no 0.777778 8 0.875000 0.058808 0.991859 76.200000 atpI gene atpI atpI 14189 14677 -1 489 LSC 0.022154 30 0 5 15 no 0.777778 8 0.875000 0.022154 1.000000 55.300000 IGS_014 igs atpI|rpoC2 atpI-rpoC2 14678 16025 0 1348 LSC 0.029117 122 12 5 1 no 1.000000 9 1.000000 0.029170 1.000000 69.300000 rpoC2 gene rpoC2 rpoC2 16026 19970 -1 3945 LSC 0.032728 387 37 0 72 no 0.777778 8 0.875000 0.032467 0.999240 63.100000 IGS_015 igs rpoC2|trnD-GUC rpoC2-trnD-GUC 19971 27140 0 7170 LSC 0.027789 585 180 14 40 yes 1.000000 9 1.000000 0.027120 0.998326 64.200000 trnD-GUC tRNA trnD-GUC trnD-GUC 27141 27214 1 74 LSC 0.005255 1 0 2 11 no 0.000000 2 0.000000 0.005255 1.000000 23.000000 IGS_016 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 27215 27266 0 52 LSC 0.052885 8 0 33 33 no 0.333333 6 0.500000 0.052885 1.000000 62.500000 trnY-GUA tRNA trnY-GUA trnY-GUA 27267 27348 -1 82 LSC 0.005420 2 0 5 4 no 0.222222 3 0.666667 0.005420 1.000000 28.700000 IGS_017 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 27349 27364 0 16 LSC 0.027778 2 0 10 46 no 0.111111 2 0.500000 NA 1.000000 46.600000 trnE-UUC tRNA trnE-UUC trnE-UUC 27365 27437 -1 73 LSC 0.003044 1 0 5 1 no 0.111111 2 0.500000 0.003044 1.000000 24.000000 IGS_018 igs trnE-UUC|psbM trnE-UUC-psbM 27438 27902 0 465 LSC 0.043937 63 38 26 1 yes 1.000000 9 1.000000 0.042690 0.952688 77.400000 psbM gene psbM psbM 27903 28007 1 105 LSC 0.022222 6 0 25 4 no 0.555556 6 0.833333 0.022222 1.000000 46.600000 IGS_019 igs psbM|trnC-GCA psbM-trnC-GCA 28008 30552 0 2545 LSC 0.079602 561 681 12 30 yes 1.000000 9 1.000000 0.075753 0.955992 80.700000 trnC-GCA tRNA trnC-GCA trnC-GCA 30553 30624 -1 72 LSC 0.005401 1 0 3 1 no 0.000000 2 0.000000 0.005401 1.000000 23.000000 IGS_020 igs trnC-GCA|trnG-GCC trnC-GCA-trnG-GCC 30625 31127 0 503 LSC 0.077779 112 24 41 46 yes 0.777778 8 0.875000 0.078727 0.992048 81.200000 trnG-GCC tRNA trnG-GCC trnG-GCC 31128 31198 -1 71 LSC 0.012520 2 0 0 14 no 0.000000 3 0.000000 0.012520 1.000000 27.900000 IGS_021 igs trnG-GCC|psbZ trnG-GCC-psbZ 31199 31457 0 259 LSC 0.073066 49 18 8 1 no 0.777778 8 0.875000 0.064480 0.961390 73.000000 psbZ gene psbZ psbZ 31458 31646 -1 189 LSC 0.022634 14 0 9 14 no 0.777778 8 0.875000 0.022634 1.000000 53.500000 IGS_022 igs psbZ|trnS-UGA psbZ-trnS-UGA 31647 32019 0 373 LSC 0.045874 51 8 13 45 no 0.777778 8 0.875000 0.046149 1.000000 71.600000 trnS-UGA tRNA trnS-UGA trnS-UGA 32020 32108 1 89 LSC 0.023720 6 0 0 2 no 0.555556 6 0.833333 0.023720 1.000000 48.300000 IGS_023 igs trnS-UGA|psbC trnS-UGA-psbC 32109 32403 0 295 LSC 0.070409 61 12 32 6 no 0.777778 8 0.875000 0.067725 0.972881 72.700000 psbC gene psbC psbC 32404 33825 -1 1422 LSC 0.013869 61 0 2 4 no 0.777778 8 0.875000 0.013869 1.000000 51.300000 psbD gene psbD psbD 33773 34834 -1 1062 LSC 0.017865 57 0 9 11 no 0.777778 8 0.875000 0.017865 1.000000 55.000000 IGS_025 igs psbD|trnT-GGU psbD-trnT-GGU 34835 36208 0 1374 LSC 0.053951 213 235 83 5 yes 0.777778 8 0.875000 0.050696 0.991994 79.700000 trnT-GGU tRNA trnT-GGU trnT-GGU 36209 36280 -1 72 LSC 0.009259 3 0 2 4 no 0.333333 4 0.750000 0.009259 1.000000 34.500000 IGS_026 igs trnT-GGU|trnfM-CAU trnT-GGU-trnfM-CAU 36281 36790 0 510 LSC 0.071094 105 9 24 6 no 0.777778 8 0.875000 0.071269 1.000000 75.200000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 36791 36864 -1 74 LSC 0.010511 2 0 5 68 no 0.111111 3 0.333333 0.010511 1.000000 29.300000 IGS_027 igs trnfM-CAU|psbA trnfM-CAU-psbA 36865 37208 0 344 LSC 0.015827 15 0 15 13 no 0.777778 8 0.875000 0.015827 1.000000 47.800000 psbA gene psbA psbA 37209 37289 -1 81 LSC 0.038066 10 2 24 38 no 0.777778 8 0.875000 0.037711 1.000000 67.700000 IGS_028 igs psbA|psaB psbA-psaB 37290 37508 0 219 LSC 0.050228 35 0 18 15 no 0.777778 8 0.875000 0.050228 1.000000 69.500000 psaB gene psaB psaB 37509 39713 -1 2205 LSC 0.019955 128 0 2 0 no 0.777778 8 0.875000 0.019955 1.000000 54.400000 IGS_029 igs psaB|psaA psaB-psaA 39714 39738 0 25 LSC 0.008889 1 0 1 105 no 0.111111 2 0.500000 0.008889 1.000000 29.900000 psaA gene psaA psaA 39739 41991 -1 2253 LSC 0.014758 94 0 24 20 no 0.777778 8 0.875000 0.014758 1.000000 51.400000 IGS_030 igs psaA|trnS-GGA psaA-trnS-GGA 41992 44459 0 2468 LSC 0.033650 260 19 44 4 no 1.000000 9 1.000000 0.033634 0.997569 70.500000 trnS-GGA tRNA trnS-GGA trnS-GGA 44460 44546 1 87 LSC 0.011494 3 0 0 2 no 0.222222 4 0.500000 0.011494 1.000000 32.400000 IGS_031 igs trnS-GGA|rps4 trnS-GGA-rps4 44547 44949 0 403 LSC 0.041736 53 6 0 0 no 0.777778 8 0.875000 0.041760 0.987593 68.100000 rps4 gene rps4 rps4 44950 45570 -1 621 LSC 0.024602 48 0 21 18 no 1.000000 9 1.000000 0.024602 1.000000 65.800000 IGS_032 igs rps4|trnL-UAA rps4-trnL-UAA 45571 46248 0 678 LSC 0.056790 113 27 1 58 yes 0.777778 8 0.875000 0.056482 0.998525 79.100000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 46249 46282 1 34 LSC 0.000000 0 0 0 24 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 46892 46942 1 51 LSC 0.004357 1 0 8 6 no 0.111111 2 0.500000 0.004357 1.000000 25.700000 IGS_035 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 46943 47267 0 325 LSC 0.061072 59 14 30 6 no 0.777778 8 0.875000 0.060702 0.978462 73.900000 trnF-GAA tRNA trnF-GAA trnF-GAA 47268 47340 1 73 LSC 0.006849 1 1 2 4 no 0.111111 3 0.333333 0.006913 1.000000 27.400000 IGS_036 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 47341 47566 0 226 LSC 0.064430 40 15 66 51 yes 0.777778 8 0.875000 0.065035 0.969027 77.000000 ndhJ gene ndhJ ndhJ 47567 48079 -1 513 LSC 0.021551 36 0 2 18 no 0.777778 8 0.875000 0.021551 1.000000 56.400000 IGS_037 igs ndhJ|ndhK ndhJ-ndhK 48080 48150 0 71 LSC 0.033646 7 6 11 0 no 0.333333 6 0.500000 0.034080 1.000000 58.400000 ndhK gene ndhK ndhK 48151 48891 -1 741 LSC 0.029502 67 0 3 3 no 0.777778 8 0.875000 0.029502 1.000000 64.400000 ndhC gene ndhC ndhC 48828 49244 -1 417 LSC 0.027511 39 0 10 0 no 0.777778 8 0.875000 0.027511 1.000000 59.800000 IGS_039 igs ndhC|trnV-UAC ndhC-trnV-UAC 49245 49577 0 333 LSC 0.045221 48 27 2 1 no 0.777778 8 0.875000 0.045565 0.993994 72.600000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 49578 49617 -1 40 LSC 0.030556 4 0 1 1 no 0.333333 5 0.600000 0.030556 1.000000 51.300000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 50253 50286 -1 34 LSC 0.058824 6 0 12 5 no 0.333333 6 0.500000 0.058824 1.000000 60.400000 IGS_042 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 50287 50547 0 261 LSC 0.037296 29 23 0 105 no 0.777778 8 0.875000 0.037321 1.000000 68.300000 trnM-CAU tRNA trnM-CAU trnM-CAU 50548 50620 1 73 LSC 0.000000 0 0 3 32 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_043 igs trnM-CAU|atpE trnM-CAU-atpE 50621 50774 0 154 LSC 0.051948 22 0 76 18 no 0.777778 8 0.875000 0.051948 1.000000 69.700000 atpE gene atpE atpE 50775 51173 -1 399 LSC 0.018797 24 0 0 43 no 0.777778 8 0.875000 0.018797 1.000000 51.400000 IGS_044 igs atpE|atpB atpE-atpB 51174 51178 0 5 LSC 0.000000 0 0 41 38 no 0.000000 1 0.000000 NA 1.000000 21.600000 atpB gene atpB atpB 51179 52660 -1 1482 LSC 0.017132 81 0 46 9 no 0.777778 8 0.875000 0.017132 1.000000 54.800000 IGS_045 igs atpB|rbcL atpB-rbcL 52661 53307 0 647 LSC 0.043215 87 6 1 24 no 0.777778 8 0.875000 0.043193 1.000000 72.700000 rbcL gene rbcL rbcL 53308 54735 1 1428 LSC 0.016379 72 0 16 4 no 0.777778 8 0.875000 0.016379 1.000000 53.600000 IGS_046 igs rbcL|trnR-UCG rbcL-trnR-UCG 54736 54867 0 132 LSC 0.082702 30 6 18 0 no 0.777778 8 0.875000 0.084506 0.984848 73.500000 trnR-UCG tRNA trnR-UCG trnR-UCG 54868 54948 1 81 LSC 0.032236 9 0 4 10 no 0.555556 7 0.714286 0.032236 1.000000 56.500000 IGS_047 igs trnR-UCG|accD trnR-UCG-accD 54949 55276 0 328 LSC 0.041886 42 22 1 1 no 0.555556 7 0.714286 0.042270 0.966463 66.000000 accD gene accD accD 55277 56056 1 780 LSC 0.017165 37 0 2 4 no 0.777778 8 0.875000 0.017165 1.000000 53.400000 IGS_048 igs accD|psaI accD-psaI 56057 56539 0 483 LSC 0.042394 61 14 42 23 no 0.777778 8 0.875000 0.041704 1.000000 73.900000 psaI gene psaI psaI 56540 56650 1 111 LSC 0.017518 6 0 2 31 no 0.555556 7 0.714286 0.017518 1.000000 44.000000 IGS_049 igs psaI|ycf4 psaI-ycf4 56651 57065 0 415 LSC 0.036145 44 7 5 1 no 0.777778 8 0.875000 0.036665 0.985542 66.200000 ycf4 gene ycf4 ycf4 57066 57620 1 555 LSC 0.015516 29 0 53 12 no 0.777778 8 0.875000 0.015516 1.000000 53.100000 IGS_050 igs ycf4|cemA ycf4-cemA 57621 57803 0 183 LSC 0.046145 24 4 6 19 no 0.777778 8 0.875000 0.046307 1.000000 69.700000 cemA gene cemA cemA 57804 59318 1 1515 LSC 0.023084 105 6 6 12 no 0.777778 8 0.875000 0.023084 0.996040 59.400000 IGS_051 igs cemA|psbJ cemA-psbJ 59319 61303 0 1985 LSC 0.042047 241 86 39 24 yes 1.000000 9 1.000000 0.040752 0.978338 80.400000 psbJ gene psbJ psbJ 61304 61429 -1 126 LSC 0.030556 10 6 38 3 no 0.666667 7 0.857143 0.030556 0.952381 59.200000 IGS_052 igs psbJ|psbL psbJ-psbL 61430 61544 0 115 LSC 0.013043 6 0 27 9 no 0.222222 4 0.500000 0.013043 1.000000 36.000000 psbL gene psbL psbL 61545 61661 -1 117 LSC 0.025166 9 0 18 6 no 0.777778 8 0.875000 0.025166 1.000000 54.700000 IGS_053 igs psbL|psbF psbL-psbF 61662 61682 0 21 LSC 0.010582 1 0 1 21 no 0.111111 2 0.500000 0.010582 1.000000 31.600000 psbF gene psbF psbF 61683 61802 -1 120 LSC 0.012037 5 0 14 84 no 0.555556 6 0.833333 0.012037 1.000000 40.800000 IGS_054 igs psbF|psbE psbF-psbE 61803 61817 0 15 LSC 0.000000 0 0 29 69 no 0.000000 1 0.000000 NA 1.000000 20.900000 psbE gene psbE psbE 61818 62069 -1 252 LSC 0.014330 10 0 44 52 no 0.555556 7 0.714286 0.014330 1.000000 43.900000 IGS_055 igs psbE|petL psbE-petL 62070 62811 0 742 LSC 0.039021 92 127 74 9 no 0.777778 8 0.875000 0.038367 0.993261 75.700000 petL gene petL petL 62812 62907 1 96 LSC 0.028356 8 0 10 13 no 0.777778 8 0.875000 0.028356 1.000000 57.300000 IGS_056 igs petL|petG petL-petG 62908 63065 0 158 LSC 0.049226 25 2 8 13 no 0.777778 8 0.875000 0.049646 1.000000 70.000000 petG gene petG petG 63066 63236 1 171 LSC 0.027290 17 0 4 1 no 0.777778 8 0.875000 0.027290 1.000000 58.100000 IGS_057 igs petG|trnW-CCA petG-trnW-CCA 63237 63481 0 245 LSC 0.086585 51 42 0 82 no 0.777778 8 0.875000 0.086591 0.836735 68.000000 trnW-CCA tRNA trnW-CCA trnW-CCA 63482 63555 -1 74 LSC 0.000000 0 0 0 8 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_058 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 63556 63738 0 183 LSC 0.074052 36 10 74 65 yes 0.777778 8 0.875000 0.073016 1.000000 79.200000 trnP-UGG tRNA trnP-UGG trnP-UGG 63739 63812 -1 74 LSC 0.006757 1 0 6 1 no 0.000000 2 0.000000 0.006757 1.000000 23.600000 IGS_059 igs trnP-UGG|psaJ trnP-UGG-psaJ 63813 64158 0 346 LSC 0.082450 84 15 8 6 no 0.777778 8 0.875000 0.081614 0.997110 74.800000 psaJ gene psaJ psaJ 64159 64287 1 129 LSC 0.017227 6 0 0 1 no 0.555556 7 0.714286 0.017227 1.000000 42.700000 IGS_060 igs psaJ|rpl33 psaJ-rpl33 64288 64513 0 226 LSC 0.068830 45 7 5 30 no 0.777778 8 0.875000 0.068302 1.000000 72.500000 rpl33 gene rpl33 rpl33 64514 64714 1 201 LSC 0.034273 18 8 10 6 no 0.777778 8 0.875000 0.032459 0.960199 64.000000 IGS_061 igs rpl33|rps18 rpl33-rps18 64715 64793 0 79 LSC 0.038678 9 17 6 1 no 0.777778 8 0.875000 0.034872 0.911392 66.200000 rps18 gene rps18 rps18 64794 65021 1 228 LSC 0.019737 14 0 17 0 no 1.000000 9 1.000000 0.019737 1.000000 54.100000 IGS_062 igs rps18|rpl20 rps18-rpl20 65022 65240 0 219 LSC 0.036565 23 26 6 7 no 0.777778 8 0.875000 0.036866 0.890411 64.600000 rpl20 gene rpl20 rpl20 65241 65597 -1 357 LSC 0.032758 34 0 3 5 no 0.777778 8 0.875000 0.032758 1.000000 61.400000 IGS_063 igs rpl20|rps12 rpl20-rps12 65598 66511 0 914 LSC 0.049373 135 32 43 0 yes 1.000000 9 1.000000 0.048135 0.995624 82.500000 rps12_part1 gene rps12 rps12 66512 66625 -1 114 LSC 0.009259 4 0 7 3 no 0.333333 5 0.600000 0.009259 1.000000 33.800000 IGS_064 igs rps12|clpP rps12-clpP 66626 66883 0 258 LSC 0.048246 35 9 29 18 no 0.777778 8 0.875000 0.048064 0.980620 72.400000 clpP gene clpP clpP 66884 68747 -1 1864 LSC 0.026076 156 30 1 3 no 0.777778 8 0.875000 0.026157 0.995708 62.800000 IGS_065 igs clpP|psbB clpP-psbB 68748 69285 0 538 LSC 0.040551 64 11 17 11 no 1.000000 9 1.000000 0.039939 1.000000 76.400000 psbB gene psbB psbB 69286 70740 1 1455 LSC 0.019034 84 0 15 0 no 0.777778 8 0.875000 0.019034 1.000000 55.400000 IGS_066 igs psbB|psbT psbB-psbT 70741 70980 0 240 LSC 0.043981 32 1 16 1 no 0.777778 8 0.875000 0.044061 1.000000 66.200000 psbT gene psbT psbT 70981 71085 1 105 LSC 0.032804 12 0 1 1 no 0.777778 8 0.875000 0.032804 1.000000 60.700000 IGS_067 igs psbT|psbN psbT-psbN 71086 71225 0 140 LSC 0.051389 21 1 0 21 no 0.777778 8 0.875000 0.051071 1.000000 69.200000 psbN gene psbN psbN 71226 71363 -1 138 LSC 0.023752 11 0 1 11 no 0.777778 8 0.875000 0.023752 1.000000 54.100000 IGS_068 igs psbN|psbH psbN-psbH 71364 71448 0 85 LSC 0.018954 5 0 7 54 no 0.444444 6 0.666667 0.018954 1.000000 43.500000 psbH gene psbH psbH 71449 71673 1 225 LSC 0.008148 6 0 48 6 no 0.555556 7 0.714286 0.008148 1.000000 36.600000 IGS_069 igs psbH|petB psbH-petB 71674 71794 0 121 LSC 0.033287 12 0 24 12 no 0.777778 8 0.875000 0.033287 1.000000 61.600000 petB gene petB petB 71795 73260 1 1466 LSC 0.029104 123 42 1 13 no 1.000000 9 1.000000 0.028938 0.989768 70.500000 IGS_070 igs petB|petD petB-petD 73261 73460 0 200 LSC 0.038889 19 11 1 1 no 0.777778 8 0.875000 0.039795 1.000000 68.800000 petD gene petD petD 73461 74593 1 1133 LSC 0.024872 89 7 22 3 no 0.777778 8 0.875000 0.024882 0.995587 61.400000 IGS_071 igs petD|rpoA petD-rpoA 74594 74964 0 371 LSC 0.075052 76 37 19 0 no 0.777778 8 0.875000 0.073440 0.959569 74.100000 rpoA gene rpoA rpoA 74965 75966 -1 1002 LSC 0.026308 79 0 22 1 no 0.777778 8 0.875000 0.026308 1.000000 61.400000 IGS_072 igs rpoA|rpl36 rpoA-rpl36 75967 76471 0 505 LSC 0.025413 40 3 3 9 no 1.000000 9 1.000000 0.025439 1.000000 64.100000 rpl36 gene rpl36 rpl36 76472 76585 -1 114 LSC 0.018031 6 0 3 4 no 0.555556 7 0.714286 0.018031 1.000000 44.100000 IGS_073 igs rpl36|rps8 rpl36-rps8 76586 77092 0 507 LSC 0.039941 62 10 1 1 no 1.000000 9 1.000000 0.039769 1.000000 74.800000 rps8 gene rps8 rps8 77093 77491 -1 399 LSC 0.040239 50 0 2 0 no 0.777778 8 0.875000 0.040239 1.000000 66.000000 IGS_074 igs rps8|rpl14 rps8-rpl14 77492 77713 0 222 LSC 0.053089 37 17 1 0 no 0.777778 8 0.875000 0.053898 0.990991 74.000000 rpl14 gene rpl14 rpl14 77714 78025 -1 312 LSC 0.031517 26 0 2 1 no 0.555556 7 0.714286 0.031517 1.000000 54.100000 IGS_075 igs rpl14|rpl16 rpl14-rpl16 78026 78306 0 281 LSC 0.068844 57 10 6 6 yes 1.000000 9 1.000000 0.068458 1.000000 77.300000 rpl16 gene rpl16 rpl16 78307 79456 -1 1150 LSC 0.039061 132 24 0 9 no 0.777778 8 0.875000 0.038901 1.000000 72.100000 IGS_076 igs rpl16|rps3 rpl16-rps3 79457 79567 0 111 LSC 0.053053 15 0 20 14 no 0.777778 8 0.875000 0.053053 1.000000 69.400000 rps3 gene rps3 rps3 79568 80074 -1 507 LSC 0.016656 27 0 2 7 no 0.777778 8 0.875000 0.016656 1.000000 51.900000 IGS_077 igs rps3|rpl22 rps3-rpl22 80075 80327 0 253 LSC 0.035918 28 35 0 14 no 1.000000 9 1.000000 0.035372 1.000000 71.900000 rpl22 gene rpl22 rpl22 80328 80714 -1 387 LSC 0.043733 47 29 3 2 no 0.777778 8 0.875000 0.043706 1.000000 73.500000 IGS_078 igs rpl22|rps19 rpl22-rps19 80715 80731 0 17 LSC 0.013072 1 0 6 21 no 0.111111 2 0.500000 NA 1.000000 34.500000 rps19 gene rps19 rps19 80732 81010 -1 279 LSC 0.020709 21 0 14 4 no 0.777778 8 0.875000 0.020709 1.000000 52.400000 IGS_079 igs rps19|rpl23 rps19-rpl23 81011 82650 0 1640 LSC 0.036070 180 6 1 2 no 1.000000 9 1.000000 0.036024 0.999390 72.700000 rpl23 gene rpl23 rpl23 82651 82920 -1 270 LSC 0.043092 34 6 5 5 no 0.777778 8 0.875000 0.042153 1.000000 68.200000 IGS_080 igs rpl23|trnI-CAU rpl23-trnI-CAU 82921 83085 0 165 LSC 0.089731 39 0 22 14 no 0.777778 8 0.875000 0.089731 1.000000 69.400000 trnI-CAU tRNA trnI-CAU trnI-CAU 83086 83159 -1 74 LSC 0.006006 2 0 6 1 no 0.222222 3 0.666667 0.006006 1.000000 29.100000 IGS_081 igs trnI-CAU|ndhB trnI-CAU-ndhB 83160 83559 0 400 IRb 0.017651 21 30 14 132 no 0.777778 8 0.875000 0.017434 0.937500 54.600000 ndhB gene ndhB ndhB 83560 84369 1 810 IRb 0.005830 15 0 95 21 no 0.777778 8 0.875000 0.005830 1.000000 46.100000 IGS_082 igs ndhB|trnT-UGU ndhB-trnT-UGU 84370 84558 0 189 IRb 0.012934 9 0 6 13 no 0.555556 7 0.714286 0.012934 1.000000 41.400000 trnT-UGU_part1 tRNA trnT-UGU trnT-UGU 84559 84592 1 34 IRb 0.021242 2 0 74 8 no 0.111111 3 0.333333 0.021242 1.000000 38.300000 trnT-UGU_part2 tRNA trnT-UGU trnT-UGU 85054 85094 1 41 IRb 0.010840 2 0 27 33 no 0.222222 3 0.666667 0.010840 1.000000 35.900000 IGS_085 igs trnT-UGU|trnR-ACG trnT-UGU-trnR-ACG 85095 86636 0 1542 IRb 0.028004 128 95 10 77 no 0.777778 8 0.875000 0.027430 0.971466 68.200000 trnR-ACG tRNA trnR-ACG trnR-ACG 86637 86710 -1 74 IRb 0.000000 0 0 15 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_086 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 86711 86944 0 234 IRb 0.028015 18 10 89 18 no 0.777778 8 0.875000 0.028027 1.000000 62.100000 rrn5S rRNA rrn5S rrn5S 86945 87067 -1 123 IRb 0.003162 1 0 7 8 no 0.000000 2 0.000000 0.003162 1.000000 21.700000 IGS_087 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 87068 87343 0 276 IRb 0.032709 24 0 104 122 no 0.777778 8 0.875000 0.032709 1.000000 66.700000 rrn4.5S rRNA rrn4.5S rrn4.5S 87344 87446 -1 103 IRb 0.000000 0 0 81 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_088 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 87447 87565 0 119 IRb 0.021475 6 0 184 95 no 0.333333 6 0.500000 0.021475 1.000000 48.100000 rrn23S rRNA rrn23S rrn23S 87566 90391 -1 2826 IRb 0.003797 34 2 13 26 no 0.777778 8 0.875000 0.003797 0.999292 41.100000 IGS_089 igs rrn23S|trnA-UGC rrn23S-trnA-UGC 90392 90565 0 174 IRb 0.018519 7 0 11 87 no 0.555556 7 0.714286 0.018519 1.000000 43.400000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 90566 90601 -1 36 IRb 0.000000 0 0 29 51 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 91418 91454 -1 37 IRb 0.000000 0 0 32 37 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_092 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 91455 91519 0 65 IRb 0.003419 1 6 69 8 no 0.222222 3 0.666667 0.003509 1.000000 32.900000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 91520 91555 -1 36 IRb 0.013889 1 0 27 32 no 0.000000 2 0.000000 0.013889 1.000000 30.500000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 92583 92618 -1 36 IRb 0.000000 0 2 29 20 no 0.111111 2 0.500000 0.000000 0.944444 26.300000 IGS_095 igs trnI-GAU|rrn16S trnI-GAU-rrn16S 92619 92932 0 314 IRb 0.018073 19 20 65 83 no 0.777778 8 0.875000 0.018009 0.993631 60.000000 rrn16S rRNA rrn16S rrn16S 92933 94432 -1 1500 IRb 0.002778 12 0 23 36 no 0.777778 8 0.875000 0.002778 1.000000 43.600000 IGS_096 igs rrn16S|rps12 rrn16S-rps12 94433 96312 0 1880 IRb 0.024249 141 158 110 57 no 0.777778 8 0.875000 0.024122 0.999468 69.300000 rps12_part2 gene rps12 rps12 96313 97147 1 835 IRb 0.009248 25 0 2 12 no 0.777778 8 0.875000 0.009248 1.000000 47.600000 IGS_097 igs rps12|psbA rps12-psbA 97148 98168 0 1021 IRb 0.012624 41 10 6 14 no 1.000000 9 1.000000 0.012419 1.000000 56.100000 psbA gene psbA psbA 98169 99230 1 1062 IRb 0.003766 15 0 59 30 no 0.777778 8 0.875000 0.003766 1.000000 45.300000 IGS_098 igs psbA|trnH-GUG psbA-trnH-GUG 99231 99645 0 415 IRb 0.023410 31 25 27 79 no 0.777778 8 0.875000 0.023172 0.956627 62.100000 trnH-GUG tRNA trnH-GUG trnH-GUG 99646 99719 1 74 IRb 0.000000 0 0 5 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_099 igs trnH-GUG|trnN-GUU trnH-GUG-trnN-GUU 99720 106819 0 7100 IRb 0.013376 298 52 79 53 no 1.000000 9 1.000000 0.013314 0.999296 53.600000 trnN-GUU tRNA trnN-GUU trnN-GUU 106820 106891 -1 72 IRb 0.003086 1 0 3 15 no 0.111111 2 0.500000 0.003086 1.000000 24.200000 IGS_100 igs trnN-GUU|rpl32 trnN-GUU-rpl32 106892 110418 0 3527 SSC 0.049789 509 23 18 8 yes 1.000000 9 1.000000 0.049691 1.000000 76.100000 rpl32 gene rpl32 rpl32 110419 110589 1 171 SSC 0.042235 20 1 5 6 no 0.777778 8 0.875000 0.042476 0.994152 65.800000 IGS_101 igs rpl32|trnP-GGG rpl32-trnP-GGG 110590 110971 0 382 SSC 0.090884 97 18 3 48 yes 0.777778 8 0.875000 0.088563 0.986911 75.500000 trnP-GGG tRNA trnP-GGG trnP-GGG 110972 111045 -1 74 SSC 0.009009 3 0 0 0 no 0.222222 3 0.666667 0.009009 1.000000 32.000000 IGS_102 igs trnP-GGG|trnL-UAG trnP-GGG-trnL-UAG 111046 111332 0 287 SSC 0.081707 73 29 15 82 no 0.777778 8 0.875000 0.080586 1.000000 75.200000 trnL-UAG tRNA trnL-UAG trnL-UAG 111333 111411 1 79 SSC 0.000000 0 0 1 3 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_103 igs trnL-UAG|ccsA trnL-UAG-ccsA 111412 111703 0 292 SSC 0.066305 56 2 80 14 no 0.777778 8 0.875000 0.066224 1.000000 70.200000 ccsA gene ccsA ccsA 111704 112648 1 945 SSC 0.033392 94 0 10 2 no 0.777778 8 0.875000 0.033392 1.000000 67.200000 IGS_104 igs ccsA|ndhD ccsA-ndhD 112649 113031 0 383 SSC 0.063471 74 4 0 21 no 0.777778 8 0.875000 0.063471 0.989556 70.900000 ndhD gene ndhD ndhD 113032 114540 -1 1509 SSC 0.028551 135 0 3 1 no 1.000000 9 1.000000 0.028551 1.000000 67.800000 IGS_105 igs ndhD|psaC ndhD-psaC 114541 114690 0 150 SSC 0.062267 27 3 2 0 no 0.777778 8 0.875000 0.062503 0.993333 70.500000 psaC gene psaC psaC 114691 114936 -1 246 SSC 0.027552 20 0 1 16 no 0.555556 7 0.714286 0.027552 1.000000 51.800000 IGS_106 igs psaC|ndhE psaC-ndhE 114937 115184 0 248 SSC 0.068692 49 12 5 48 no 0.777778 8 0.875000 0.068569 1.000000 74.400000 ndhE gene ndhE ndhE 115185 115412 -1 228 SSC 0.025341 21 0 14 4 no 0.777778 8 0.875000 0.025341 1.000000 56.500000 IGS_107 igs ndhE|ndhG ndhE-ndhG 115413 115573 0 161 SSC 0.056911 25 11 13 15 yes 1.000000 9 1.000000 0.056690 1.000000 79.500000 ndhG gene ndhG ndhG 115574 116167 -1 594 SSC 0.032548 57 0 5 8 no 0.777778 8 0.875000 0.032548 1.000000 66.500000 IGS_108 igs ndhG|ndhI ndhG-ndhI 116168 116329 0 162 SSC 0.088035 35 16 1 4 no 0.777778 8 0.875000 0.089141 0.969136 73.000000 ndhI gene ndhI ndhI 116330 116851 -1 522 SSC 0.027352 44 0 2 6 no 0.777778 8 0.875000 0.027352 1.000000 61.000000 IGS_109 igs ndhI|ndhA ndhI-ndhA 116852 117001 0 150 SSC 0.073344 34 12 32 3 no 0.777778 8 0.875000 0.069396 1.000000 74.400000 ndhA gene ndhA ndhA 117002 119065 -1 2064 SSC 0.041036 254 22 5 4 no 1.000000 9 1.000000 0.041053 0.998547 75.100000 IGS_110 igs ndhA|ndhH ndhA-ndhH 119066 119066 0 1 SSC 0.000000 0 0 1 3 no 0.000000 1 0.000000 NA 1.000000 18.800000 ndhH gene ndhH ndhH 119067 120245 -1 1179 SSC 0.025045 87 0 2 35 no 0.777778 8 0.875000 0.025045 1.000000 60.200000 IGS_111 igs ndhH|rps15 ndhH-rps15 120246 120326 0 81 SSC 0.030864 7 0 3 2 no 0.222222 5 0.400000 0.030864 1.000000 47.800000 rps15 gene rps15 rps15 120327 120623 -1 297 SSC 0.044706 41 0 1 25 no 0.777778 8 0.875000 0.044706 1.000000 66.000000 IGS_112 igs rps15|ycf1 rps15-ycf1 120624 120900 0 277 SSC 0.053149 45 0 1 6 no 0.777778 8 0.875000 0.053149 1.000000 68.400000 ycf1 gene ycf1 ycf1 120901 124902 -1 4002 SSC 0.049295 600 0 3 5 yes 0.777778 8 0.875000 0.049295 1.000000 69.800000 IGS_113 igs ycf1|chlN ycf1-chlN 124903 126381 0 1479 SSC 0.061874 256 17 4 7 yes 1.000000 9 1.000000 0.061554 0.993239 80.200000 chlN gene chlN chlN 126382 127764 -1 1383 SSC 0.039447 151 0 1 14 no 0.777778 8 0.875000 0.039447 1.000000 69.900000 IGS_114 igs chlN|chlL chlN-chlL 127765 127983 0 219 SSC 0.050736 31 2 3 21 no 0.777778 8 0.875000 0.050851 1.000000 69.700000 chlL gene chlL chlL 127984 128709 -1 726 SSC 0.027969 60 0 4 58 no 0.777778 8 0.875000 0.027969 1.000000 62.800000 IGS_115 igs chlL|trnN-GUU chlL-trnN-GUU 128710 129156 0 447 IRa 0.020756 31 7 1 18 no 0.777778 8 0.875000 0.020843 1.000000 56.400000 trnN-GUU tRNA trnN-GUU trnN-GUU 129157 129228 1 72 IRa 0.003086 1 0 15 3 no 0.111111 2 0.500000 0.003086 1.000000 24.200000 IGS_116 igs trnN-GUU|trnH-GUG trnN-GUU-trnH-GUG 129229 136328 0 7100 IRa 0.013357 298 46 53 79 no 1.000000 9 1.000000 0.013336 0.999296 53.500000 trnH-GUG tRNA trnH-GUG trnH-GUG 136329 136402 -1 74 IRa 0.000000 0 0 5 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_117 igs trnH-GUG|psbA trnH-GUG-psbA 136403 136817 0 415 IRa 0.022390 30 25 79 27 no 0.777778 8 0.875000 0.022475 0.956627 61.300000 psbA gene psbA psbA 136818 137879 -1 1062 IRa 0.003766 15 0 30 59 no 0.777778 8 0.875000 0.003766 1.000000 45.300000 IGS_118 igs psbA|rps12 psbA-rps12 137880 138900 0 1021 IRa 0.012352 40 12 14 6 no 1.000000 9 1.000000 0.012229 1.000000 56.100000 rps12_part2 gene rps12 rps12 138901 139735 -1 835 IRa 0.008184 21 0 12 20 no 1.000000 9 1.000000 0.008184 1.000000 51.500000 IGS_119 igs rps12|rrn16S rps12-rrn16S 139736 141615 0 1880 IRa 0.023937 139 159 1 110 no 1.000000 9 1.000000 0.023886 1.000000 69.000000 rrn16S rRNA rrn16S rrn16S 141616 143115 1 1500 IRa 0.002778 12 0 36 23 no 0.777778 8 0.875000 0.002778 1.000000 43.600000 IGS_120 igs rrn16S|trnI-GAU rrn16S-trnI-GAU 143116 143429 0 314 IRa 0.020829 21 22 83 65 no 0.777778 8 0.875000 0.020010 0.990446 61.900000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 143430 143465 1 36 IRa 0.000000 0 1 20 29 no 0.111111 2 0.500000 0.000000 0.972222 24.700000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 144493 144528 1 36 IRa 0.013889 1 0 32 27 no 0.000000 2 0.000000 0.013889 1.000000 30.500000 IGS_123 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 144529 144593 0 65 IRa 0.003419 1 6 8 69 no 0.222222 3 0.666667 0.003509 1.000000 32.900000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 144594 144630 1 37 IRa 0.000000 0 0 37 32 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 145447 145482 1 36 IRa 0.000000 0 0 51 29 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_126 igs trnA-UGC|rrn23S trnA-UGC-rrn23S 145483 145656 0 174 IRa 0.018519 7 0 87 11 no 0.555556 7 0.714286 0.018519 1.000000 43.400000 rrn23S rRNA rrn23S rrn23S 145657 148482 1 2826 IRa 0.003797 34 2 26 13 no 0.777778 8 0.875000 0.003797 0.999292 41.100000 IGS_127 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 148483 148601 0 119 IRa 0.021475 6 0 95 184 no 0.333333 6 0.500000 0.021475 1.000000 48.100000 rrn4.5S rRNA rrn4.5S rrn4.5S 148602 148704 1 103 IRa 0.000000 0 0 19 81 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_128 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 148705 148980 0 276 IRa 0.032709 24 0 122 104 no 0.777778 8 0.875000 0.032709 1.000000 66.700000 rrn5S rRNA rrn5S rrn5S 148981 149103 1 123 IRa 0.003162 1 0 8 7 no 0.000000 2 0.000000 0.003162 1.000000 21.700000 IGS_129 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 149104 149337 0 234 IRa 0.028083 18 10 18 89 no 0.777778 8 0.875000 0.027531 1.000000 62.100000 trnR-ACG tRNA trnR-ACG trnR-ACG 149338 149411 1 74 IRa 0.000000 0 0 3 15 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_130 igs trnR-ACG|trnT-UGU trnR-ACG-trnT-UGU 149412 150953 0 1542 IRa 0.027970 127 92 77 10 no 0.777778 8 0.875000 0.027142 0.970817 68.200000 trnT-UGU_part2 tRNA trnT-UGU trnT-UGU 150954 150994 -1 41 IRa 0.010840 2 0 33 27 no 0.222222 3 0.666667 0.010840 1.000000 35.900000 trnT-UGU_part1 tRNA trnT-UGU trnT-UGU 151456 151489 -1 34 IRa 0.021242 2 0 8 74 no 0.111111 3 0.333333 0.021242 1.000000 38.300000 IGS_133 igs trnT-UGU|ndhB trnT-UGU-ndhB 151490 151678 0 189 IRa 0.012934 9 0 13 6 no 0.555556 7 0.714286 0.012934 1.000000 41.400000 ndhB gene ndhB ndhB 151679 152488 -1 810 IRa 0.005830 15 0 21 95 no 0.777778 8 0.875000 0.005830 1.000000 46.100000 IGS_134 igs ndhB|matK ndhB-matK 152489 1433 0 1778 LSC 0.041326 219 35 132 0 no 0.777778 8 0.875000 0.040444 0.993813 72.200000