primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnL-CAA-ycf2_p1 trnL-CAA-ycf2 1 AAATGGTAGACACGCGAGAC ATGGCTTTTCCCGGATGAAA 20 20 50.0 45.0 58.0 57.8 15.9 0.7 0.237960 16178 16296 235-235 1.000000 80.8 trnL-CAA-ycf2_p2 trnL-CAA-ycf2 2 AAATGGTAGACACGCGAGAC TGGCTTTTCCCGGATGAAAT 20 20 50.0 45.0 58.0 57.8 15.9 0.7 0.237960 16178 16296 234-234 1.000000 80.8 trnL-CAA-ycf2_p3 trnL-CAA-ycf2 3 TGAAATGGTAGACACGCGAG ATGGCTTTTCCCGGATGAAA 20 20 50.0 45.0 58.0 57.8 15.9 0.7 0.239330 16178 16296 237-237 1.000000 80.8 trnL-CAA-ycf2_p4 trnL-CAA-ycf2 4 TGAAATGGTAGACACGCGAG TGGCTTTTCCCGGATGAAAT 20 20 50.0 45.0 58.0 57.8 15.9 0.7 0.239330 16178 16296 236-236 1.000000 80.8 trnL-CAA-ycf2_p5 trnL-CAA-ycf2 5 AAATGGTAGACACGCGAGAC AAGATGGCTTTTCCCGGATG 20 20 50.0 50.0 58.0 58.2 15.9 0.7 0.240071 16178 16296 238-238 1.000000 80.8 trnK-UUU-rps16_p1 trnK-UUU-rps16 1 AAAGCCGAGTACTCTACCGT GGTGCTCAACCTACAGAAACT 20 21 50.0 47.6 58.2 57.9 20.3 0.0 1.295845 28474 29047 698-726 1.000000 74.1 trnK-UUU-rps16_p2 trnK-UUU-rps16 2 AAGCCGAGTACTCTACCGTT GGTGCTCAACCTACAGAAACT 20 21 50.0 47.6 58.2 57.9 20.3 0.0 1.295845 28474 29047 697-725 1.000000 74.1 trnK-UUU-rps16_p3 trnK-UUU-rps16 3 TCTAGCCGCACTTAAAAGCC GGTGCTCAACCTACAGAAACT 20 21 50.0 47.6 58.3 57.9 0.0 0.0 1.393263 28474 29047 712-740 1.000000 73.2 trnK-UUU-rps16_p4 trnK-UUU-rps16 4 CCGCACTTAAAAGCCGAGTA GGTGCTCAACCTACAGAAACT 20 21 50.0 47.6 58.3 57.9 5.3 0.0 1.410232 28474 29047 707-735 1.000000 73.1 trnK-UUU-rps16_p5 trnK-UUU-rps16 5 TACCGTTGAGTTAGCAACCC GGTGCTCAACCTACAGAAACT 20 21 50.0 47.6 57.5 57.9 0.0 0.0 1.588183 28474 29047 684-712 1.000000 71.9 rps16-trnQ-UUG_p1 rps16-trnQ-UUG 1 CCACAACGGATCATGTCCTT GAGGTTCGAATCCTTCCGTC 20 20 50.0 55.0 57.9 58.1 11.1 16.9 0.189961 30192 30788 691-697 1.000000 80.3 rps16-trnQ-UUG_p2 rps16-trnQ-UUG 2 AAGTCGCACGTTGCTTTCTA GAGGTTCGAATCCTTCCGTC 20 20 45.0 55.0 58.1 58.1 8.1 16.9 0.215425 30192 30788 670-676 1.000000 80.2 rps16-trnQ-UUG_p3 rps16-trnQ-UUG 3 TCATGTCCTTCAAGTCGCAC GAGGTTCGAATCCTTCCGTC 20 20 50.0 55.0 58.2 58.1 0.0 16.9 0.280333 30192 30788 681-687 1.000000 79.6 rps16-trnQ-UUG_p4 rps16-trnQ-UUG 4 CCACAACGGATCATGTCCTT TAAGGCATCGGGTTTTGGTC 20 20 50.0 50.0 57.9 58.2 11.1 0.0 0.284881 30192 30788 721-727 1.000000 79.5 rps16-trnQ-UUG_p5 rps16-trnQ-UUG 5 AAGTCGCACGTTGCTTTCTA TAAGGCATCGGGTTTTGGTC 20 20 45.0 50.0 58.1 58.2 8.1 0.0 0.310345 30192 30788 700-706 1.000000 79.3 atpF-atpH_p1 atpF-atpH 1 CCAGTGACCCAAGAAAACGA GCAGAGGGAAAAATACGAGGT 20 21 50.0 47.6 58.0 58.0 0.0 0.0 1.050974 36869 37292 580-590 1.000000 73.5 atpF-atpH_p2 atpF-atpH 2 ATTAAACCCGAAACTCCCGG GCAGAGGGAAAAATACGAGGT 20 21 50.0 47.6 57.9 58.0 0.0 0.0 1.131081 36869 37292 607-617 1.000000 72.8 atpF-atpH_p3 atpF-atpH 3 CCAGTGACCCAAGAAAACGA AGCAGAGGGAAAAATACGAGG 20 21 50.0 47.6 58.0 57.7 0.0 0.0 1.306229 36869 37292 581-591 1.000000 71.5 atpF-atpH_p4 atpF-atpH 4 ATTAAACCCGAAACTCCCGG AGCAGAGGGAAAAATACGAGG 20 21 50.0 47.6 57.9 57.7 0.0 0.0 1.386336 36869 37292 608-618 1.000000 70.7 atpF-atpH_p5 atpF-atpH 5 CCAGTGACCCAAGAAAACGA CGAAGCAGAGGGAAAAATACG 20 21 50.0 47.6 58.0 57.3 0.0 0.0 1.696558 36869 37292 584-594 1.000000 68.3 trnT-GGU-psbD_p1 trnT-GGU-psbD 1 GTGGTAGAGTAACGCCATGG AAGCACCATGAAGAGCAACA 20 20 55.0 45.0 58.1 58.0 7.6 0.0 0.078594 54894 56172 1699-1710 1.000000 81.0 trnT-GGU-psbD_p2 trnT-GGU-psbD 2 GTGGTAGAGTAACGCCATGG AGCACCATGAAGAGCAACAA 20 20 55.0 45.0 58.1 58.0 7.6 0.0 0.078594 54894 56172 1698-1709 1.000000 81.0 trnT-GGU-psbD_p3 trnT-GGU-psbD 3 GTGGTAGAGTAACGCCATGG AAACTAGGCGCAAAGAACCA 20 20 55.0 45.0 58.1 58.0 7.6 10.8 0.088408 54894 56172 1859-1870 1.000000 80.8 trnT-GGU-psbD_p4 trnT-GGU-psbD 4 GTGGTAGAGTAACGCCATGG AACTAGGCGCAAAGAACCAA 20 20 55.0 45.0 58.1 58.0 7.6 10.8 0.088408 54894 56172 1858-1869 1.000000 80.8 trnT-GGU-psbD_p5 trnT-GGU-psbD 5 GTGGTAGAGTAACGCCATGG ACCAAAACTAGGCGCAAAGA 20 20 55.0 45.0 58.1 58.0 7.6 10.8 0.088408 54894 56172 1863-1874 1.000000 80.7 trnG-GCC-trnM-CAU_p1 trnG-GCC-trnM-CAU 1 TCTTTGCCAAGGAGAAGACG CTTGAGGTCACGGGTTCAAA 20 20 50.0 50.0 57.8 58.0 0.0 4.2 0.208039 59893 60074 250-261 1.000000 83.7 trnG-GCC-trnM-CAU_p2 trnG-GCC-trnM-CAU 2 TCTTTGCCAAGGAGAAGACG GTCACGGGTTCAAATCCTGT 20 20 50.0 50.0 57.8 58.1 0.0 0.0 0.277623 59893 60074 244-255 1.000000 83.3 trnG-GCC-trnM-CAU_p3 trnG-GCC-trnM-CAU 3 TCTTTGCCAAGGAGAAGACG TCACGGGTTCAAATCCTGTC 20 20 50.0 50.0 57.8 57.8 0.0 0.0 0.348744 59893 60074 243-254 1.000000 82.7 trnG-GCC-trnM-CAU_p4 trnG-GCC-trnM-CAU 4 TCTTTGCCAAGGAGAAGACG CACGGGTTCAAATCCTGTCT 20 20 50.0 50.0 57.8 57.8 0.0 0.0 0.354836 59893 60074 242-253 1.000000 82.7 trnG-GCC-trnM-CAU_p5 trnG-GCC-trnM-CAU 5 TCTTTGCCAAGGAGAAGACG TGAGGTCACGGGTTCAAATC 20 20 50.0 50.0 57.8 57.8 0.0 0.0 0.348744 59893 60074 248-259 1.000000 82.6 psaA-pafI_p1 psaA-pafI 1 TTTTACTTCTGGTTCCGGCG ATCAAGCCGCTGAGTATTGG 20 20 50.0 50.0 58.5 58.0 0.0 0.0 0.525877 65206 66009 935-942 1.000000 77.5 psaA-pafI_p2 psaA-pafI 2 TTTTACTTCTGGTTCCGGCG ATTGGTTGAAGATCACGGGG 20 20 50.0 50.0 58.5 57.9 0.0 0.0 0.613689 65206 66009 869-876 1.000000 76.9 psaA-pafI_p3 psaA-pafI 3 TTTTACTTCTGGTTCCGGCG CGATCAAGCCGCTGAGTATT 20 20 50.0 50.0 58.5 58.1 0.0 0.0 0.626827 65206 66009 937-944 1.000000 76.7 psaA-pafI_p4 psaA-pafI 4 TTTTACTTCTGGTTCCGGCG AGCCGCTGAGTATTGGAAAC 20 20 50.0 50.0 58.5 58.3 0.0 0.0 0.745852 65206 66009 931-938 1.000000 75.7 psaA-pafI_p5 psaA-pafI 5 TTTTACTTCTGGTTCCGGCG CAAGCCGCTGAGTATTGGAA 20 20 50.0 50.0 58.5 58.3 0.0 0.0 0.747080 65206 66009 933-940 1.000000 75.7 pafI-trnS-GGA_p1 pafI-trnS-GGA 1 CATTTATCCGCGATCTAGGCA CCCTCGGTAAACAAAAGCCT 21 20 47.6 50.0 58.0 58.1 8.2 0.0 1.134847 68051 68669 708-708 1.000000 72.3 pafI-trnS-GGA_p2 pafI-trnS-GGA 2 CATTTATCCGCGATCTAGGCA ACGGAAAGAGAGGGATTCGA 21 20 47.6 50.0 58.0 58.2 8.2 0.0 1.191833 68051 68669 729-729 1.000000 71.8 pafI-trnS-GGA_p3 pafI-trnS-GGA 3 CATTTATCCGCGATCTAGGCA TTCCAATGCTACGCCTTGAA 21 20 47.6 45.0 58.0 57.8 8.2 5.6 1.233148 68051 68669 679-679 1.000000 71.5 pafI-trnS-GGA_p4 pafI-trnS-GGA 4 TGGCCACAATTGAAAAGGTC CCCTCGGTAAACAAAAGCCT 20 20 45.0 50.0 56.8 58.1 13.6 0.0 1.291736 68051 68669 744-744 1.000000 71.0 pafI-trnS-GGA_p5 pafI-trnS-GGA 5 TGGCCACAATTGAAAAGGTC ACGGAAAGAGAGGGATTCGA 20 20 45.0 50.0 56.8 58.2 13.6 0.0 1.348722 68051 68669 765-765 1.000000 70.5 trnL-UAA-trnF-GAA_p1 trnL-UAA-trnF-GAA 1 AATCGTGAGGGTTCAAGTCC TCAGTCCTCTGCTCTACCAG 20 20 50.0 55.0 57.5 57.9 0.0 0.0 0.610708 71519 71865 413-414 1.000000 77.2 trnL-UAA-trnF-GAA_p2 trnL-UAA-trnF-GAA 2 AATCGTGAGGGTTCAAGTCC TTGAACTGGTGTAGTGGCAC 20 20 50.0 50.0 57.5 58.0 0.0 10.3 0.512616 71519 71865 494-494 0.333333 49.2 trnL-UAA-trnF-GAA_p3 trnL-UAA-trnF-GAA 3 AATCGTGAGGGTTCAAGTCC GTGTAGTGGCACGAGGATTT 20 20 50.0 50.0 57.5 57.9 0.0 12.7 0.569172 71519 71865 486-486 0.333333 48.8 trnL-UAA-trnF-GAA_p4 trnL-UAA-trnF-GAA 4 AATCGTGAGGGTTCAAGTCC TTTCAGTCCTCTGCTCTTGC 20 20 50.0 50.0 57.5 57.8 0.0 0.0 0.650287 71519 71865 468-468 0.333333 48.1 trnL-UAA-trnF-GAA_p5 trnL-UAA-trnF-GAA 5 AATCGTGAGGGTTCAAGTCC AGTGGCACGAGGATTTTCAG 20 20 50.0 50.0 57.5 58.2 0.0 12.7 0.660896 71519 71865 482-482 0.333333 48.0 psbE-petL_p1 psbE-petL 1 GAAACGGTAGGTACAGCCAG CTCCTGCGGGTTAGAGAAAC 20 20 55.0 55.0 58.0 58.0 0.0 12.4 0.017511 88037 89280 2012-2016 1.000000 81.6 psbE-petL_p2 psbE-petL 2 CATTGCGGATATTGACCCCA CTCCTGCGGGTTAGAGAAAC 20 20 50.0 55.0 58.0 58.0 0.0 12.4 0.031685 88037 89280 2037-2041 1.000000 81.5 psbE-petL_p3 psbE-petL 3 GAAACGGTAGGTACAGCCAG AGCGCTCTTAGTTCAGTTCG 20 20 55.0 50.0 58.0 58.0 0.0 2.6 0.021998 88037 89280 2164-2168 1.000000 81.4 psbE-petL_p4 psbE-petL 4 CAAGTGGTCGTGCTAGAGAC CTCCTGCGGGTTAGAGAAAC 20 20 55.0 55.0 58.0 58.0 0.0 12.4 0.027568 88037 89280 2312-2316 1.000000 81.3 psbE-petL_p5 psbE-petL 5 CAAGTGGTCGTGCTAGAGAC AGCGCTCTTAGTTCAGTTCG 20 20 55.0 50.0 58.0 58.0 0.0 2.6 0.032055 88037 89280 2464-2468 1.000000 81.2 rpl16_p1 rpl16 1 GCACAAATAAATGCAAAGGGTG TTTTCCACCCAATGAATTCT 22 20 40.9 35.0 57.3 52.9 0.0 7.1 7.782352 104526 105980 1634-1638 1.000000 42.3 rpl16_p2 rpl16 2 GCACAAATAAATGCAAAGGGT TTTTCCACCCAATGAATTCT 21 20 38.1 35.0 55.9 52.9 0.0 7.1 8.210125 104526 105980 1634-1638 1.000000 42.3 rpl16_p3 rpl16 3 GCACAAATAAATGCAAAGGGTG TTTTTCCACCCAATGAATTCT 22 21 40.9 33.3 57.3 53.8 0.0 7.1 7.846035 104526 105980 1635-1639 1.000000 42.2 rpl16_p4 rpl16 4 GCACAAATAAATGCAAAGGGT TTTTTCCACCCAATGAATTCT 21 21 38.1 33.3 55.9 53.8 0.0 7.1 8.273808 104526 105980 1635-1639 1.000000 42.2 rpl16_p5 rpl16 5 GCACAAATAAATGCAAAGGGTG TTTTTCCACCCAATGAATTC 22 20 40.9 35.0 57.3 52.1 0.0 0.0 8.522581 104526 105980 1635-1639 1.000000 42.2 ycf2-trnL-CAA_p1 ycf2-trnL-CAA 1 ATGGCTTTTCCCGGATGAAA AAATGGTAGACACGCGAGAC 20 20 45.0 50.0 57.8 58.0 0.7 15.9 0.237960 115689 115807 235-235 1.000000 80.8 ycf2-trnL-CAA_p2 ycf2-trnL-CAA 2 TGGCTTTTCCCGGATGAAAT AAATGGTAGACACGCGAGAC 20 20 45.0 50.0 57.8 58.0 0.7 15.9 0.237960 115689 115807 234-234 1.000000 80.8 ycf2-trnL-CAA_p3 ycf2-trnL-CAA 3 ATGGCTTTTCCCGGATGAAA TGAAATGGTAGACACGCGAG 20 20 45.0 50.0 57.8 58.0 0.7 15.9 0.239330 115689 115807 237-237 1.000000 80.8 ycf2-trnL-CAA_p4 ycf2-trnL-CAA 4 TGGCTTTTCCCGGATGAAAT TGAAATGGTAGACACGCGAG 20 20 45.0 50.0 57.8 58.0 0.7 15.9 0.239330 115689 115807 236-236 1.000000 80.8 ycf2-trnL-CAA_p5 ycf2-trnL-CAA 5 AAGATGGCTTTTCCCGGATG AAATGGTAGACACGCGAGAC 20 20 50.0 50.0 58.2 58.0 0.7 15.9 0.240071 115689 115807 238-238 1.000000 80.8 ycf1_p1 ycf1 1 GGAATCGTCCAACGCGATAT CTTTGAACACGCATGGAACC 20 20 50.0 50.0 58.2 57.9 15.9 0.0 0.270908 132102 132221 1051-1054 1.000000 80.6 ycf1_p2 ycf1 2 GGAATCGTCCAACGCGATAT CTGGTTGCTCCGATGTATCC 20 20 50.0 55.0 58.2 58.1 15.9 0.0 0.349350 132102 132221 972-975 1.000000 80.1 ycf1_p3 ycf1 3 GGAATCGTCCAACGCGATAT ATTAGGGGCCGGATTATCCA 20 20 50.0 50.0 58.2 57.9 15.9 5.0 0.274177 132102 132221 947-947 0.333333 51.1 ycf1_p4 ycf1 4 GGAATCGTCCAACGCGATAT AATTTGATGCTCCGTCGACA 20 20 50.0 45.0 58.2 57.9 15.9 17.2 0.313737 132102 132221 875-875 0.333333 50.8 ycf1_p5 ycf1 5 GGAATCGTCCAACGCGATAT GGGCCGGATTATCCAGATTC 20 20 50.0 55.0 58.2 57.9 15.9 5.0 0.335773 132102 132221 942-942 0.333333 50.6 ndhD-ccsA_p1 ndhD-ccsA 1 CCCGGATTTCGTTCTCTCAC ATGGTTCATTTACATTAACACTT 20 23 55.0 26.1 58.4 52.6 0.7 0.0 8.759943 144319 144525 304-306 1.000000 43.2 ndhD-ccsA_p2 ndhD-ccsA 2 GGTATTGGCATTTACCCGGA ATGGTTCATTTACATTAACACTT 20 23 50.0 26.1 57.6 52.6 0.7 0.0 8.753226 144319 144525 318-320 1.000000 43.0 ndhD-ccsA_p3 ndhD-ccsA 3 AGGTATTGGCATTTACCCGG ATGGTTCATTTACATTAACACTT 20 23 50.0 26.1 57.6 52.6 18.5 0.0 8.759842 144319 144525 319-321 1.000000 43.0 ndhD-ccsA_p4 ndhD-ccsA 4 GGTATTGGCATTTACCCGGA AGTTATGGTTCATTTACATTAACACT 20 26 50.0 26.9 57.6 55.4 0.7 0.0 8.915718 144319 144525 322-324 1.000000 43.0 ndhD-ccsA_p5 ndhD-ccsA 5 AGGTATTGGCATTTACCCGG AGTTATGGTTCATTTACATTAACACT 20 26 50.0 26.9 57.6 55.4 18.5 0.0 8.922334 144319 144525 323-325 1.000000 43.0 trnL-UAG-rpl32_p1 trnL-UAG-rpl32 1 CTCGCACTGCTTCCTAAGAG AAAAAGGGGTATTGGGAGGC 20 20 55.0 50.0 58.1 57.8 0.0 0.0 0.327781 145725 146722 1108-1150 1.000000 82.9 trnL-UAG-rpl32_p2 trnL-UAG-rpl32 2 CTCTCGCACTGCTTCCTAAG AAAAAGGGGTATTGGGAGGC 20 20 55.0 50.0 58.1 57.8 0.0 0.0 0.327781 145725 146722 1110-1152 1.000000 82.9 trnL-UAG-rpl32_p3 trnL-UAG-rpl32 3 ATCCGCATAAAAGAGCTGCA AAAAAGGGGTATTGGGAGGC 20 20 45.0 50.0 58.0 57.8 1.0 0.0 0.290385 145725 146722 1742-1790 1.000000 81.8 trnL-UAG-rpl32_p4 trnL-UAG-rpl32 4 TCCGCATAAAAGAGCTGCAT AAAAAGGGGTATTGGGAGGC 20 20 45.0 50.0 58.0 57.8 1.0 0.0 0.290385 145725 146722 1741-1789 1.000000 81.8 trnL-UAG-rpl32_p5 trnL-UAG-rpl32 5 GTTAAGAGGCCTGACGTAGC AAAAAGGGGTATTGGGAGGC 20 20 55.0 50.0 58.1 57.8 12.0 0.0 0.323800 145725 146722 1686-1686 0.333333 50.7