feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score psbA gene psbA psbA 1 1062 -1 1062 LSC 0.005011 18 0 20 169 no 0.500000 6 0.666667 0.005011 1.000000 40.200000 IGS_001 igs psbA|trnK-UUU psbA-trnK-UUU 1063 1322 0 260 LSC 0.017811 12 19 80 53 no 0.625000 6 0.833333 0.016641 1.000000 54.100000 trnK-UUU tRNA trnK-UUU trnK-UUU 1323 1357 -1 35 LSC 0.000000 0 0 20 18 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_002 igs trnK-UUU|matK trnK-UUU-matK 1358 1634 0 277 LSC 0.009799 7 0 55 7 no 0.375000 5 0.600000 0.009799 1.000000 33.900000 matK gene matK matK 1635 3164 -1 1530 LSC 0.009104 39 0 18 26 no 0.750000 7 0.857143 0.009104 1.000000 47.600000 IGS_003 igs matK|trnK-UUU matK-trnK-UUU 3165 3898 0 734 LSC 0.014257 26 18 25 40 no 0.500000 6 0.666667 0.014044 0.975477 49.400000 trnK-UUU tRNA trnK-UUU trnK-UUU 3899 3935 -1 37 LSC 0.000000 0 0 46 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_004 igs trnK-UUU|rps16 trnK-UUU-rps16 3936 4519 0 584 LSC 0.017906 29 87 83 105 yes 1.000000 8 1.000000 0.018211 0.950342 68.100000 rps16 gene rps16 rps16 4520 5677 -1 1158 LSC 0.014147 44 14 29 135 no 0.500000 6 0.666667 0.014069 0.994819 48.900000 IGS_005 igs rps16|trnQ-UUG rps16-trnQ-UUG 5678 6998 0 1321 LSC 0.016919 55 571 74 81 yes 1.000000 8 1.000000 0.017725 0.982589 64.600000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 6999 7070 -1 72 LSC 0.000000 0 0 4 9 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_006 igs trnQ-UUG|psbK trnQ-UUG-psbK 7071 7428 0 358 LSC 0.021548 22 0 76 14 no 0.750000 7 0.857143 0.021548 1.000000 52.400000 psbK gene psbK psbK 7429 7614 1 186 LSC 0.006720 3 0 45 1 no 0.250000 4 0.500000 0.006720 1.000000 28.600000 IGS_007 igs psbK|psbI psbK-psbI 7615 8029 0 415 LSC 0.016437 19 12 39 29 no 0.625000 6 0.833333 0.016927 0.971084 50.800000 psbI gene psbI psbI 8030 8140 1 111 LSC 0.002252 1 0 7 20 no 0.125000 2 0.500000 0.002252 1.000000 23.800000 IGS_008 igs psbI|trnS-GCU psbI-trnS-GCU 8141 8295 0 155 LSC 0.021659 8 25 81 69 no 0.375000 5 0.600000 0.025824 0.838710 48.200000 trnS-GCU tRNA trnS-GCU trnS-GCU 8296 8383 -1 88 LSC 0.002841 1 0 31 7 no 0.125000 2 0.500000 0.002841 1.000000 24.300000 IGS_009 igs trnS-GCU|trnG-UCC trnS-GCU-trnG-UCC 8384 9257 0 874 LSC 0.027974 57 59 18 80 yes 1.000000 8 1.000000 0.023735 0.939359 70.100000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 9258 9278 1 21 LSC 0.000000 0 0 49 59 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_010 igs trnG-UCC|trnG-UCC trnG-UCC-trnG-UCC 9279 9998 0 720 LSC 0.013029 23 4 70 110 no 0.750000 7 0.857143 0.012238 0.997222 54.800000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 9999 10049 1 51 LSC 0.000000 0 0 12 59 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 trnG-GCC tRNA trnG-GCC trnG-GCC 10012 10048 1 37 LSC 0.000000 0 0 25 60 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_012 igs trnG-GCC|trnR-UCU trnG-GCC-trnR-UCU 10049 10235 0 187 LSC 0.014324 7 10 62 87 no 1.000000 8 1.000000 0.014978 0.973262 58.400000 trnR-UCU tRNA trnR-UCU trnR-UCU 10236 10307 1 72 LSC 0.000000 0 0 1 15 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_013 igs trnR-UCU|atpA trnR-UCU-atpA 10308 10536 0 229 LSC 0.021959 13 20 73 3 no 0.750000 7 0.857143 0.019875 1.000000 55.700000 atpA gene atpA atpA 10537 12060 -1 1524 LSC 0.005343 24 0 28 15 no 0.750000 7 0.857143 0.005343 1.000000 44.500000 IGS_014 igs atpA|atpF atpA-atpF 12061 12120 0 60 LSC 0.034722 6 3 161 22 no 0.375000 4 0.750000 0.031642 1.000000 61.500000 atpF gene atpF atpF 12121 13463 -1 1343 LSC 0.009183 31 13 31 1 no 1.000000 8 1.000000 0.009135 0.994788 51.900000 IGS_015 igs atpF|atpH atpF-atpH 13464 13906 0 443 LSC 0.074874 83 377 10 105 yes 0.750000 7 0.857143 0.074829 0.930023 72.400000 atpH gene atpH atpH 13907 14152 -1 246 LSC 0.002758 2 0 19 7 no 0.125000 3 0.333333 0.002758 1.000000 23.900000 IGS_016 igs atpH|atpI atpH-atpI 14153 15443 0 1291 LSC 0.011830 41 297 113 99 yes 1.000000 8 1.000000 0.011676 0.974438 64.900000 atpI gene atpI atpI 15444 16187 -1 744 LSC 0.003216 7 0 8 19 no 0.375000 5 0.600000 0.003216 1.000000 35.300000 IGS_017 igs atpI|rps2 atpI-rps2 16188 16398 0 211 LSC 0.021835 13 0 34 4 no 0.500000 6 0.666667 0.021835 1.000000 46.000000 rps2 gene rps2 rps2 16399 17109 -1 711 LSC 0.006229 13 0 16 4 no 0.375000 5 0.600000 0.006229 1.000000 37.400000 IGS_018 igs rps2|rpoC2 rps2-rpoC2 17110 17313 0 204 LSC 0.012430 8 0 62 43 no 0.500000 6 0.666667 0.012430 1.000000 41.800000 rpoC2 gene rpoC2 rpoC2 17314 21525 -1 4212 LSC 0.006258 74 6 16 87 no 0.750000 7 0.857143 0.006260 1.000000 40.400000 IGS_019 igs rpoC2|rpoC1 rpoC2-rpoC1 21526 21694 0 169 LSC 0.002536 1 0 260 33 no 0.000000 2 0.000000 0.002536 1.000000 23.100000 rpoC1 gene rpoC1 rpoC1 21695 24496 -1 2802 LSC 0.004728 38 34 81 4 no 0.750000 7 0.857143 0.004746 0.997502 41.800000 IGS_020 igs rpoC1|rpoB rpoC1-rpoB 24497 24522 0 26 LSC 0.009615 1 0 53 153 no 0.125000 2 0.500000 0.009615 1.000000 34.200000 rpoB gene rpoB rpoB 24523 27735 -1 3213 LSC 0.005247 49 0 21 85 no 0.750000 7 0.857143 0.005247 1.000000 41.400000 IGS_021 igs rpoB|trnC-GCA rpoB-trnC-GCA 27736 28971 0 1236 LSC 0.013205 42 42 133 47 no 0.500000 6 0.666667 0.013526 0.986246 51.700000 trnC-GCA tRNA trnC-GCA trnC-GCA 28972 29042 1 71 LSC 0.003521 1 0 7 57 no 0.125000 2 0.500000 0.003521 1.000000 25.000000 IGS_022 igs trnC-GCA|petN trnC-GCA-petN 29043 29771 0 729 LSC 0.008818 22 18 23 38 no 0.500000 6 0.666667 0.008808 1.000000 46.800000 petN gene petN petN 29772 29861 1 90 LSC 0.002778 1 0 8 7 no 0.125000 2 0.500000 0.002778 1.000000 24.300000 IGS_023 igs petN|psbM petN-psbM 29862 31118 0 1257 LSC 0.016502 62 57 51 27 no 0.750000 7 0.857143 0.016770 0.985680 59.700000 psbM gene psbM psbM 31119 31223 -1 105 LSC 0.009524 2 0 14 60 no 0.000000 3 0.000000 0.009524 1.000000 26.500000 IGS_024 igs psbM|trnD-GUC psbM-trnD-GUC 31224 32404 0 1181 LSC 0.118794 305 901 35 77 yes 1.000000 8 1.000000 0.193672 0.976291 81.600000 trnD-GUC tRNA trnD-GUC trnD-GUC 32405 32478 -1 74 LSC 0.000000 0 0 2 3 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_025 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 32479 32944 0 466 LSC 0.020233 26 1 76 300 no 0.500000 6 0.666667 0.020256 1.000000 53.600000 trnY-GUA tRNA trnY-GUA trnY-GUA 32945 33028 -1 84 LSC 0.000000 0 0 9 300 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_026 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 33029 33087 0 59 LSC 0.000000 0 0 93 253 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 trnE-UUC tRNA trnE-UUC trnE-UUC 33088 33160 -1 73 LSC 0.000000 0 4 152 180 no 0.250000 3 0.666667 0.000000 1.000000 40.800000 IGS_027 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 33161 33980 0 820 LSC 0.013180 26 663 225 77 no 0.500000 6 0.666667 0.023295 0.984146 49.800000 trnT-GGU tRNA trnT-GGU trnT-GGU 33981 34052 1 72 LSC 0.000000 0 0 65 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_028 igs trnT-GGU|psbD trnT-GGU-psbD 34053 35297 0 1245 LSC 0.011943 43 49 137 101 yes 1.000000 8 1.000000 0.011991 0.995984 65.700000 psbD gene psbD psbD 35298 36359 1 1062 LSC 0.002287 6 0 4 12 no 0.375000 5 0.600000 0.002287 1.000000 34.100000 psbC gene psbC psbC 36343 37728 1 1386 LSC 0.002165 8 0 196 29 no 0.375000 5 0.600000 0.002165 1.000000 35.900000 IGS_030 igs psbC|trnS-UGA psbC-trnS-UGA 37729 37975 0 247 LSC 0.027810 16 2 156 143 no 0.500000 6 0.666667 0.027410 1.000000 60.400000 trnS-UGA tRNA trnS-UGA trnS-UGA 37976 38068 -1 93 LSC 0.000000 0 0 6 50 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_031 igs trnS-UGA|psbZ trnS-UGA-psbZ 38069 38436 0 368 LSC 0.008832 9 22 99 203 no 0.500000 6 0.666667 0.009238 0.967391 49.000000 psbZ gene psbZ psbZ 38437 38625 1 189 LSC 0.000000 0 0 101 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_032 igs psbZ|trnG-GCC psbZ-trnG-GCC 38626 39225 0 600 LSC 0.017703 29 19 290 103 no 0.750000 7 0.857143 0.017492 0.988333 64.100000 trnG-GCC tRNA trnG-GCC trnG-GCC 39226 39296 1 71 LSC 0.000000 0 0 27 32 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 IGS_033 igs trnG-GCC|trnfM-CAU trnG-GCC-trnfM-CAU 39297 39488 0 192 LSC 0.007440 5 37 98 23 no 0.750000 7 0.857143 0.008593 0.895833 43.500000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 39489 39560 -1 72 LSC 0.012897 3 0 0 1 no 0.125000 3 0.333333 0.012897 1.000000 32.100000 IGS_034 igs trnfM-CAU|rps14 trnfM-CAU-rps14 39561 39734 0 174 LSC 0.014163 6 0 26 150 no 0.500000 6 0.666667 0.014163 1.000000 40.800000 rps14 gene rps14 rps14 39735 40037 -1 303 LSC 0.004833 4 0 23 2 no 0.250000 5 0.400000 0.004833 1.000000 27.500000 IGS_035 igs rps14|psaB rps14-psaB 40038 40174 0 137 LSC 0.018248 6 0 32 90 no 0.125000 4 0.250000 0.018248 1.000000 37.200000 psaB gene psaB psaB 40175 42379 -1 2205 LSC 0.002640 17 0 22 55 no 0.500000 6 0.666667 0.002640 1.000000 36.700000 IGS_036 igs psaB|psaA psaB-psaA 42380 42404 0 25 LSC 0.000000 0 0 174 30 no 0.000000 1 0.000000 0.000000 1.000000 21.000000 psaA gene psaA psaA 42405 44657 -1 2253 LSC 0.001966 13 0 199 57 no 0.750000 7 0.857143 0.001966 1.000000 43.400000 IGS_037 igs psaA|pafI psaA-pafI 44658 45354 0 697 LSC 0.012861 25 10 29 296 no 0.375000 5 0.600000 0.013048 0.985653 45.800000 pafI gene pafI pafI 45355 47378 -1 2024 LSC 0.006945 41 14 22 23 no 1.000000 8 1.000000 0.006776 0.995553 50.700000 IGS_038 igs pafI|trnS-GGA pafI-trnS-GGA 47379 47777 0 399 LSC 0.012084 12 0 80 104 no 0.625000 6 0.833333 0.012084 1.000000 47.700000 trnS-GGA tRNA trnS-GGA trnS-GGA 47778 47864 1 87 LSC 0.000000 0 0 57 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_039 igs trnS-GGA|rps4 trnS-GGA-rps4 47865 48145 0 281 LSC 0.009786 8 9 144 51 no 0.500000 6 0.666667 0.009900 1.000000 43.800000 rps4 gene rps4 rps4 48146 48751 -1 606 LSC 0.005599 10 0 15 103 no 0.500000 6 0.666667 0.005599 1.000000 40.100000 IGS_040 igs rps4|trnT-UGU rps4-trnT-UGU 48752 49088 0 337 LSC 0.011340 11 0 90 29 no 0.500000 6 0.666667 0.011340 1.000000 40.300000 trnT-UGU tRNA trnT-UGU trnT-UGU 49089 49161 -1 73 LSC 0.005871 1 0 12 5 no 0.000000 2 0.000000 0.005871 1.000000 23.500000 IGS_041 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 49162 50233 0 1072 LSC 0.013997 48 69 43 70 no 0.750000 7 0.857143 0.013836 0.995336 59.800000 trnL-UAA tRNA trnL-UAA trnL-UAA 50234 50270 1 37 LSC 0.000000 0 0 25 33 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_042 igs trnL-UAA|trnL-UAA trnL-UAA-trnL-UAA 50271 50818 0 548 LSC 0.009450 13 8 62 16 no 1.000000 8 1.000000 0.009481 1.000000 52.800000 trnL-UAA tRNA trnL-UAA trnL-UAA 50819 50868 1 50 LSC 0.005000 1 0 106 4 no 0.125000 2 0.500000 0.005000 1.000000 26.100000 IGS_043 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 50869 51237 0 369 LSC 0.013647 14 6 33 130 no 0.500000 5 0.800000 0.013742 1.000000 44.900000 trnF-GAA tRNA trnF-GAA trnF-GAA 51238 51310 1 73 LSC 0.000000 0 0 81 57 no 0.000000 1 0.000000 0.000000 1.000000 23.000000 IGS_044 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 51311 51643 0 333 LSC 0.012334 12 0 154 158 no 0.500000 6 0.666667 0.012334 1.000000 50.400000 ndhJ gene ndhJ ndhJ 51644 52120 -1 477 LSC 0.002471 4 0 10 23 no 0.250000 4 0.500000 0.002471 1.000000 30.000000 IGS_045 igs ndhJ|ndhK ndhJ-ndhK 52121 52236 0 116 LSC 0.002155 1 0 17 19 no 0.125000 2 0.500000 0.002155 1.000000 24.400000 ndhK gene ndhK ndhK 52237 52920 -1 684 LSC 0.006944 13 0 92 13 no 0.500000 6 0.666667 0.006944 1.000000 40.900000 IGS_046 igs ndhK|ndhC ndhK-ndhC 52921 52989 0 69 LSC 0.026915 4 4 37 54 no 0.750000 7 0.857143 0.028116 0.956522 59.900000 ndhC gene ndhC ndhC 52990 53352 -1 363 LSC 0.003542 4 0 9 4 no 0.375000 5 0.600000 0.003542 1.000000 30.400000 IGS_047 igs ndhC|trnV-UAC ndhC-trnV-UAC 53353 54293 0 941 LSC 0.012563 32 481 69 56 no 0.750000 7 0.857143 0.012299 0.998937 57.400000 trnV-UAC tRNA trnV-UAC trnV-UAC 54294 54330 -1 37 LSC 0.000000 0 0 3 19 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_048 igs trnV-UAC|trnV-UAC trnV-UAC-trnV-UAC 54331 54916 0 586 LSC 0.007253 13 0 40 131 no 0.500000 6 0.666667 0.007253 1.000000 43.100000 trnV-UAC tRNA trnV-UAC trnV-UAC 54917 54955 -1 39 LSC 0.000000 0 0 23 92 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_049 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 54956 55138 0 183 LSC 0.002732 2 0 62 110 no 0.125000 2 0.500000 0.002732 1.000000 28.300000 trnM-CAU tRNA trnM-CAU trnM-CAU 55139 55211 1 73 LSC 0.000000 0 0 72 37 no 0.000000 1 0.000000 0.000000 1.000000 21.500000 IGS_050 igs trnM-CAU|atpE trnM-CAU-atpE 55212 55444 0 233 LSC 0.008277 7 0 145 24 no 0.375000 5 0.600000 0.008277 1.000000 35.100000 atpE gene atpE atpE 55445 55846 -1 402 LSC 0.003998 5 0 66 18 no 0.250000 4 0.500000 0.003998 1.000000 30.300000 atpB gene atpB atpB 55843 57339 -1 1497 LSC 0.003841 16 0 158 11 no 0.500000 6 0.666667 0.003841 1.000000 38.300000 IGS_052 igs atpB|rbcL atpB-rbcL 57340 58127 0 788 LSC 0.006662 14 190 6 56 no 1.000000 8 1.000000 0.006335 0.997462 54.600000 rbcL gene rbcL rbcL 58128 59555 1 1428 LSC 0.008528 28 0 75 81 no 0.375000 5 0.600000 0.008528 1.000000 43.900000 IGS_053 igs rbcL|accD rbcL-accD 59556 60103 0 548 LSC 0.006582 11 0 14 48 no 0.375000 5 0.600000 0.006582 1.000000 37.500000 accD gene accD accD 60104 61600 1 1497 LSC 0.006799 31 20 77 0 no 1.000000 8 1.000000 0.006820 1.000000 51.000000 IGS_054 igs accD|psaI accD-psaI 61601 62388 0 788 LSC 0.021501 45 98 30 99 yes 1.000000 8 1.000000 0.019103 0.954315 67.100000 psaI gene psaI psaI 62389 62502 1 114 LSC 0.005952 2 0 40 41 no 0.250000 3 0.666667 0.005952 1.000000 31.300000 IGS_055 igs psaI|pafII psaI-pafII 62503 62952 0 450 LSC 0.007937 11 0 3 23 no 0.375000 5 0.600000 0.007937 1.000000 35.800000 pafII gene pafII pafII 62953 63507 1 555 LSC 0.007465 10 0 8 20 no 0.375000 5 0.600000 0.007465 1.000000 37.300000 IGS_056 igs pafII|cemA pafII-cemA 63508 64258 0 751 LSC 0.008789 16 283 93 240 no 0.750000 7 0.857143 0.008972 0.992011 57.000000 cemA gene cemA cemA 64259 64957 1 699 LSC 0.004139 6 0 3 23 no 0.125000 4 0.250000 0.004139 1.000000 30.500000 IGS_057 igs cemA|petA cemA-petA 64958 65192 0 235 LSC 0.016565 10 0 129 242 no 0.375000 5 0.600000 0.016565 1.000000 48.200000 petA gene petA petA 65193 66155 1 963 LSC 0.005155 14 0 39 4 no 0.500000 6 0.666667 0.005155 1.000000 38.800000 IGS_058 igs petA|psbJ petA-psbJ 66156 67256 0 1101 LSC 0.014435 41 22 126 132 no 0.750000 7 0.857143 0.014486 0.991826 61.800000 psbJ gene psbJ psbJ 67257 67379 -1 123 LSC 0.000000 0 0 143 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_059 igs psbJ|psbL psbJ-psbL 67380 67521 0 142 LSC 0.007797 3 0 266 18 no 0.125000 3 0.333333 0.007797 1.000000 28.600000 psbL gene psbL psbL 67522 67638 -1 117 LSC 0.003663 1 0 9 300 no 0.000000 2 0.000000 0.003663 1.000000 22.100000 IGS_060 igs psbL|psbF psbL-psbF 67639 67660 0 22 LSC 0.000000 0 0 98 300 no 0.000000 1 0.000000 0.000000 1.000000 26.100000 psbF gene psbF psbF 67661 67780 -1 120 LSC 0.000000 0 0 120 300 no 0.000000 1 0.000000 0.000000 1.000000 27.700000 IGS_061 igs psbF|psbE psbF-psbE 67781 67789 0 9 LSC 0.000000 0 0 240 297 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 67790 68041 -1 252 LSC 0.000000 0 0 249 45 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_062 igs psbE|petL psbE-petL 68042 69431 0 1390 LSC 0.012897 49 173 300 159 yes 1.000000 8 1.000000 0.012788 0.987050 70.800000 petL gene petL petL 69432 69527 1 96 LSC 0.000000 0 2 23 63 no 0.000000 2 0.000000 0.000000 0.979167 22.400000 IGS_063 igs petL|petG petL-petG 69528 69720 0 193 LSC 0.014804 9 9 119 87 no 0.500000 6 0.666667 0.014518 0.974093 52.000000 petG gene petG petG 69721 69834 1 114 LSC 0.002193 1 0 7 30 no 0.125000 2 0.500000 0.002193 1.000000 23.700000 IGS_064 igs petG|trnW-CCA petG-trnW-CCA 69835 69975 0 141 LSC 0.014438 5 0 26 88 no 0.375000 5 0.600000 0.014438 1.000000 38.700000 trnW-CCA tRNA trnW-CCA trnW-CCA 69976 70049 -1 74 LSC 0.000000 0 0 14 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_065 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 70050 70227 0 178 LSC 0.016051 7 8 88 82 no 0.500000 6 0.666667 0.014360 0.966292 50.900000 trnP-UGG tRNA trnP-UGG trnP-UGG 70228 70301 -1 74 LSC 0.000000 0 0 35 8 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_066 igs trnP-UGG|psaJ trnP-UGG-psaJ 70302 70663 0 362 LSC 0.015292 16 0 109 71 no 0.375000 5 0.600000 0.015292 1.000000 44.800000 psaJ gene psaJ psaJ 70664 70804 1 141 LSC 0.009625 3 0 2 40 no 0.250000 4 0.500000 0.009625 1.000000 30.600000 IGS_067 igs psaJ|rpl33 psaJ-rpl33 70805 71285 0 481 LSC 0.010915 17 1 34 65 no 0.500000 6 0.666667 0.010922 1.000000 44.000000 rpl33 gene rpl33 rpl33 71286 71486 1 201 LSC 0.003376 2 0 42 12 no 0.125000 3 0.333333 0.003376 1.000000 24.800000 IGS_068 igs rpl33|rps18 rpl33-rps18 71487 71683 0 197 LSC 0.008883 4 4 107 112 no 0.375000 5 0.600000 0.008917 1.000000 42.800000 rps18 gene rps18 rps18 71684 71989 1 306 LSC 0.003385 3 0 56 8 no 0.250000 4 0.500000 0.003385 1.000000 26.900000 IGS_069 igs rps18|rpl20 rps18-rpl20 71990 72241 0 252 LSC 0.011196 7 1 31 0 no 0.375000 5 0.600000 0.011205 1.000000 34.800000 rpl20 gene rpl20 rpl20 72242 72595 -1 354 LSC 0.009685 10 0 0 31 no 0.625000 6 0.833333 0.009685 1.000000 39.500000 IGS_070 igs rpl20|rps12 rpl20-rps12 72596 73357 0 762 LSC 0.006374 16 3 39 116 no 0.750000 7 0.857143 0.006385 1.000000 47.900000 rps12_part1 gene rps12 rps12 73358 73471 -1 114 LSC 0.000000 0 0 27 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_071 igs rps12|clpP1 rps12-clpP1 73472 73582 0 111 LSC 0.022094 7 7 141 83 no 0.500000 6 0.666667 0.017652 0.945946 56.500000 clpP1_part3 gene clpP1 clpP1 73583 73810 -1 228 LSC 0.001096 1 0 31 25 no 0.125000 2 0.500000 0.001096 1.000000 24.000000 IGS_072 igs clpP1|clpP1 clpP1-clpP1 73811 74468 0 658 LSC 0.017025 29 11 144 300 yes 0.750000 7 0.857143 0.014814 0.992401 64.800000 clpP1_part2 gene clpP1 clpP1 74469 74760 -1 292 LSC 0.000000 0 0 186 13 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_073 igs clpP1|clpP1 clpP1-clpP1 74761 75591 0 831 LSC 0.005974 14 18 300 80 no 0.750000 7 0.857143 0.006000 1.000000 52.500000 clpP1_part1 gene clpP1 clpP1 75592 75662 -1 71 LSC 0.000000 0 0 75 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_074 igs clpP1|psbB clpP1-psbB 75663 76078 0 416 LSC 0.006010 7 1 146 8 no 0.625000 6 0.833333 0.006022 1.000000 38.600000 psbB gene psbB psbB 76079 77605 1 1527 LSC 0.002456 12 0 111 40 no 0.375000 5 0.600000 0.002456 1.000000 37.100000 IGS_075 igs psbB|psbT psbB-psbT 77606 77826 0 221 LSC 0.012390 8 35 249 9 no 0.625000 6 0.833333 0.010648 0.900452 44.100000 psbT gene psbT psbT 77827 77934 1 108 LSC 0.006944 3 0 84 38 no 0.250000 3 0.666667 0.006944 1.000000 32.900000 IGS_076 igs psbT|pbf1 psbT-pbf1 77935 77999 0 65 LSC 0.062088 9 10 68 134 yes 0.125000 3 0.333333 0.072877 1.000000 66.200000 pbf1 gene pbf1 pbf1 78000 78131 -1 132 LSC 0.000000 0 0 2 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_077 igs pbf1|psbH pbf1-psbH 78132 78235 0 104 LSC 0.007555 2 0 134 33 no 0.125000 3 0.333333 0.007555 1.000000 29.400000 psbH gene psbH psbH 78236 78457 1 222 LSC 0.003378 3 0 48 57 no 0.375000 4 0.750000 0.003378 1.000000 32.600000 IGS_078 igs psbH|petB psbH-petB 78458 78575 0 118 LSC 0.007869 3 0 91 78 no 0.375000 4 0.750000 0.007869 1.000000 38.400000 petB_part1 gene petB petB 78576 78581 1 6 LSC 0.000000 0 0 19 72 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_079 igs petB|petB petB-petB 78582 79337 0 756 LSC 0.009495 22 15 25 77 no 0.500000 6 0.666667 0.009615 0.989418 46.300000 petB_part2 gene petB petB 79338 79979 1 642 LSC 0.005563 11 0 57 7 no 0.375000 5 0.600000 0.005563 1.000000 37.200000 IGS_080 igs petB|petD petB-petD 79980 80195 0 216 LSC 0.015873 9 0 18 10 no 0.500000 6 0.666667 0.015873 1.000000 41.200000 petD_part1 gene petD petD 80196 80203 1 8 LSC 0.000000 0 0 12 2 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_081 igs petD|petD petD-petD 80204 80957 0 754 LSC 0.008810 19 20 20 75 no 1.000000 8 1.000000 0.008756 1.000000 55.600000 petD_part2 gene petD petD 80958 81432 1 475 LSC 0.003459 5 0 51 3 no 0.375000 5 0.600000 0.003459 1.000000 32.500000 IGS_082 igs petD|rpoA petD-rpoA 81433 81620 0 188 LSC 0.009498 7 4 73 51 no 0.500000 5 0.800000 0.009143 1.000000 43.500000 rpoA gene rpoA rpoA 81621 82607 -1 987 LSC 0.007599 24 0 16 27 no 0.500000 6 0.666667 0.007599 1.000000 42.000000 IGS_083 igs rpoA|rps11 rpoA-rps11 82608 82677 0 70 LSC 0.011735 2 6 41 105 no 0.250000 4 0.500000 0.012835 0.914286 38.900000 rps11 gene rps11 rps11 82678 83094 -1 417 LSC 0.002227 3 0 9 1 no 0.250000 4 0.500000 0.002227 1.000000 27.900000 IGS_084 igs rps11|rpl36 rps11-rpl36 83095 83207 0 113 LSC 0.012010 4 0 62 104 no 0.250000 4 0.500000 0.012010 1.000000 37.900000 rpl36 gene rpl36 rpl36 83208 83321 -1 114 LSC 0.004699 1 0 24 7 no 0.000000 2 0.000000 0.004699 1.000000 22.500000 IGS_085 igs rpl36|rps8 rpl36-rps8 83322 83744 0 423 LSC 0.018659 22 18 9 27 no 0.500000 6 0.666667 0.019038 1.000000 51.400000 rps8 gene rps8 rps8 83745 84149 -1 405 LSC 0.011640 14 0 32 25 no 0.750000 7 0.857143 0.011640 1.000000 46.400000 IGS_086 igs rps8|rpl14 rps8-rpl14 84150 84303 0 154 LSC 0.027365 10 8 18 51 no 0.500000 6 0.666667 0.028103 1.000000 55.800000 rpl14 gene rpl14 rpl14 84304 84672 -1 369 LSC 0.010550 11 0 11 25 yes 0.500000 6 0.666667 0.010550 1.000000 38.900000 IGS_087 igs rpl14|rpl16 rpl14-rpl16 84673 84831 0 159 LSC 0.067435 28 28 35 44 yes 1.000000 8 1.000000 0.052429 0.886792 77.700000 rpl16_part2 gene rpl16 rpl16 84832 85230 -1 399 LSC 0.010473 10 0 13 33 no 0.375000 5 0.600000 0.010473 1.000000 36.700000 IGS_088 igs rpl16|rpl16 rpl16-rpl16 85231 86267 0 1037 LSC 0.016680 44 18 47 60 no 0.500000 6 0.666667 0.015142 0.998071 52.800000 rpl16_part1 gene rpl16 rpl16 86268 86276 -1 9 LSC 0.000000 0 0 25 51 no 0.000000 1 0.000000 NA 1.000000 20.600000 IGS_089 igs rpl16|rps3 rpl16-rps3 86277 86425 0 149 LSC 0.013423 6 1 34 33 no 0.625000 6 0.833333 0.013467 1.000000 44.800000 rps3 gene rps3 rps3 86426 87085 -1 660 LSC 0.007846 16 0 0 31 no 0.750000 7 0.857143 0.007846 1.000000 45.600000 rpl22 gene rpl22 rpl22 87070 87582 -1 513 LSC 0.011509 16 23 7 83 no 1.000000 8 1.000000 0.010740 0.957115 55.800000 IGS_091 igs rpl22|rps19 rpl22-rps19 87583 87620 0 38 IRb 0.000000 0 0 167 45 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 rps19 gene rps19 rps19 87621 87899 -1 279 IRb 0.004352 3 0 205 23 no 0.250000 4 0.500000 0.004352 1.000000 28.500000 IGS_092 igs rps19|rpl2 rps19-rpl2 87900 87972 0 73 IRb 0.012720 3 0 77 300 no 0.125000 3 0.333333 0.012720 1.000000 37.700000 rpl2_part2 gene rpl2 rpl2 87973 88406 -1 434 IRb 0.001564 2 0 37 101 no 0.125000 3 0.333333 0.001564 1.000000 27.900000 IGS_093 igs rpl2|rpl2 rpl2-rpl2 88407 89099 0 693 IRb 0.000361 1 0 43 300 no 0.125000 2 0.500000 0.000361 1.000000 30.900000 rpl2_part1 gene rpl2 rpl2 89100 89490 -1 391 IRb 0.000639 1 0 300 14 no 0.125000 2 0.500000 0.000639 1.000000 24.600000 IGS_094 igs rpl2|rpl23 rpl2-rpl23 89491 89508 0 18 IRb 0.029762 1 0 50 211 no 0.000000 2 0.000000 NA 1.000000 42.800000 rpl23 gene rpl23 rpl23 89509 89790 -1 282 IRb 0.000887 1 0 3 5 no 0.125000 2 0.500000 0.000887 1.000000 22.200000 IGS_095 igs rpl23|trnI-CAU rpl23-trnI-CAU 89791 89955 0 165 IRb 0.002597 1 0 70 300 no 0.000000 2 0.000000 0.002597 1.000000 25.900000 trnI-CAU tRNA trnI-CAU trnI-CAU 89956 90029 -1 74 IRb 0.000000 0 0 159 300 no 0.000000 1 0.000000 0.000000 1.000000 30.700000 IGS_096 igs trnI-CAU|ycf2 trnI-CAU-ycf2 90030 90117 0 88 IRb 0.000000 0 0 233 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 90118 96978 1 6861 IRb 0.001067 21 25 300 160 no 0.750000 7 0.857143 0.001070 1.000000 46.100000 IGS_097 igs ycf2|ycf15 ycf2-ycf15 96979 97119 0 141 IRb 0.000000 0 0 285 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 ycf15 gene ycf15 ycf15 97120 97257 1 138 IRb 0.001812 1 0 300 21 no 0.125000 2 0.500000 0.001812 1.000000 24.400000 IGS_098 igs ycf15|trnL-CAA ycf15-trnL-CAA 97258 97996 0 739 IRb 0.004011 6 1 118 300 no 0.375000 5 0.600000 0.004012 1.000000 43.900000 trnL-CAA tRNA trnL-CAA trnL-CAA 97997 98077 -1 81 IRb 0.000000 0 0 61 300 no 0.000000 1 0.000000 0.000000 1.000000 23.300000 IGS_099 igs trnL-CAA|ndhB trnL-CAA-ndhB 98078 98656 0 579 IRb 0.000740 1 0 142 300 no 0.000000 2 0.000000 0.000740 1.000000 35.800000 ndhB_part2 gene ndhB ndhB 98657 99412 -1 756 IRb 0.000000 0 6 124 226 no 0.125000 2 0.500000 0.000000 1.000000 37.600000 IGS_100 igs ndhB|ndhB ndhB-ndhB 99413 100093 0 681 IRb 0.000629 1 0 300 300 no 0.000000 2 0.000000 0.000629 1.000000 40.500000 ndhB_part1 gene ndhB ndhB 100094 100870 -1 777 IRb 0.000735 1 0 300 23 no 0.000000 2 0.000000 0.000735 1.000000 27.200000 IGS_101 igs ndhB|rps7 ndhB-rps7 100871 101192 0 322 IRb 0.003327 2 0 300 294 no 0.000000 2 0.000000 0.003327 1.000000 36.500000 rps7 gene rps7 rps7 101193 101660 -1 468 IRb 0.000534 1 0 4 208 no 0.125000 2 0.500000 0.000534 1.000000 25.400000 IGS_102 igs rps7|rps12 rps7-rps12 101661 101713 0 53 IRb 0.000000 0 0 173 155 no 0.000000 1 0.000000 0.000000 1.000000 30.400000 rps12_part3 gene rps12 rps12 101714 102511 -1 798 IRb 0.002417 5 0 226 276 no 0.500000 6 0.666667 0.002417 1.000000 51.200000 IGS_103 igs rps12|trnV-GAC rps12-trnV-GAC 102512 104344 0 1833 IRb 0.002203 12 40 300 27 no 1.000000 8 1.000000 0.002173 0.999454 49.500000 trnV-GAC tRNA trnV-GAC trnV-GAC 104345 104416 1 72 IRb 0.003472 1 0 62 110 no 0.125000 2 0.500000 0.003472 1.000000 29.000000 IGS_104 igs trnV-GAC|rrn16 trnV-GAC-rrn16 104417 104657 0 241 IRb 0.001037 1 1 44 300 no 0.125000 3 0.333333 0.001039 1.000000 25.900000 rrn16 rRNA rrn16 rrn16 104658 106148 1 1491 IRb 0.000000 0 0 130 253 no 0.000000 1 0.000000 0.000000 1.000000 34.800000 IGS_105 igs rrn16|trnI-GAU rrn16-trnI-GAU 106149 106442 0 294 IRb 0.001458 1 0 300 300 no 0.000000 2 0.000000 0.001458 1.000000 34.800000 trnI-GAU tRNA trnI-GAU trnI-GAU 106443 106484 1 42 IRb 0.000000 0 0 40 300 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_106 igs trnI-GAU|ycf68 trnI-GAU-ycf68 106485 106583 0 99 IRb 0.000000 0 0 82 300 no 0.000000 1 0.000000 0.000000 1.000000 24.900000 ycf68 gene ycf68 ycf68 106584 106982 1 399 IRb 0.001074 1 9 181 300 no 0.250000 3 0.666667 0.001087 1.000000 42.600000 IGS_107 igs ycf68|trnI-GAU ycf68-trnI-GAU 106983 107440 0 458 IRb 0.000546 1 0 72 300 no 0.125000 2 0.500000 0.000546 1.000000 30.300000 trnI-GAU tRNA trnI-GAU trnI-GAU 107441 107475 1 35 IRb 0.000000 0 0 49 300 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_108 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 107476 107545 0 70 IRb 0.000000 0 0 84 300 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 trnA-UGC tRNA trnA-UGC trnA-UGC 107546 107583 1 38 IRb 0.000000 0 0 154 300 no 0.000000 1 0.000000 0.000000 1.000000 30.300000 IGS_109 igs trnA-UGC|orf56 trnA-UGC-orf56 107584 108100 0 517 IRb 0.000000 0 10 192 144 no 0.125000 2 0.500000 0.000000 1.000000 38.800000 orf56 gene orf56 orf56 108101 108208 -1 108 IRb 0.000000 0 0 300 36 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_110 igs orf56|trnA-UGC orf56-trnA-UGC 108209 108378 0 170 IRb 0.001471 1 0 300 300 no 0.125000 2 0.500000 0.001471 1.000000 37.500000 trnA-UGC tRNA trnA-UGC trnA-UGC 108379 108413 1 35 IRb 0.000000 0 0 133 300 no 0.000000 1 0.000000 0.000000 1.000000 28.700000 IGS_111 igs trnA-UGC|rrn23 trnA-UGC-rrn23 108414 108576 0 163 IRb 0.000000 0 0 168 300 no 0.000000 1 0.000000 0.000000 1.000000 31.400000 rrn23 rRNA rrn23 rrn23 108577 111385 1 2809 IRb 0.000242 2 0 300 300 no 0.125000 3 0.333333 0.000242 1.000000 39.800000 IGS_112 igs rrn23|rrn4.5 rrn23-rrn4.5 111386 111483 0 98 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5 rRNA rrn4.5 rrn4.5 111484 111586 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_113 igs rrn4.5|rrn5 rrn4.5-rrn5 111587 111842 0 256 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn5 rRNA rrn5 rrn5 111843 111963 1 121 IRb 0.000000 0 0 300 193 no 0.000000 1 0.000000 0.000000 1.000000 33.200000 IGS_114 igs rrn5|trnR-ACG rrn5-trnR-ACG 111964 112220 0 257 IRb 0.003196 2 2 300 217 no 0.375000 5 0.600000 0.003204 1.000000 44.100000 trnR-ACG tRNA trnR-ACG trnR-ACG 112221 112294 1 74 IRb 0.000000 0 0 26 143 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_115 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 112295 112898 0 604 IRb 0.003962 6 16 100 85 no 0.375000 5 0.600000 0.004002 1.000000 44.600000 trnN-GUU tRNA trnN-GUU trnN-GUU 112899 112970 -1 72 IRb 0.000000 0 0 240 13 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_116 igs trnN-GUU|ycf1 trnN-GUU-ycf1 112971 113305 0 335 IRb 0.003625 3 0 300 300 no 0.250000 4 0.500000 0.003625 1.000000 41.900000 ycf1 gene ycf1 ycf1 113306 114397 1 1092 IRb 0.003892 12 8 59 11 no 0.375000 5 0.600000 0.003903 0.999084 36.800000 ndhF gene ndhF ndhF 114394 116619 -1 2226 SSC 0.012718 77 34 15 15 no 0.500000 6 0.666667 0.011692 0.989668 45.600000 IGS_118 igs ndhF|rpl32 ndhF-rpl32 116620 117651 0 1032 SSC 0.025711 72 49 44 64 yes 1.000000 8 1.000000 0.024824 0.987403 72.700000 rpl32 gene rpl32 rpl32 117652 117810 1 159 SSC 0.012354 6 0 8 62 no 0.375000 5 0.600000 0.012354 1.000000 36.700000 IGS_119 igs rpl32|trnL-UAG rpl32-trnL-UAG 117811 118539 0 729 SSC 0.021229 41 80 3 117 yes 1.000000 8 1.000000 0.021544 0.995885 66.200000 trnL-UAG tRNA trnL-UAG trnL-UAG 118540 118619 1 80 SSC 0.000000 0 0 20 37 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_120 igs trnL-UAG|ccsA trnL-UAG-ccsA 118620 118725 0 106 SSC 0.037188 9 5 100 3 no 0.500000 6 0.666667 0.026743 0.962264 60.200000 ccsA gene ccsA ccsA 118726 119685 1 960 SSC 0.009214 26 9 14 32 no 0.750000 7 0.857143 0.008672 0.990625 48.500000 IGS_121 igs ccsA|ndhD ccsA-ndhD 119686 120002 0 317 SSC 0.027415 23 16 45 7 no 0.750000 7 0.857143 0.027001 0.981073 60.400000 ndhD gene ndhD ndhD 120003 121505 -1 1503 SSC 0.011097 45 1 19 0 no 0.500000 6 0.666667 0.011099 1.000000 43.200000 IGS_122 igs ndhD|psaC ndhD-psaC 121506 121682 0 177 SSC 0.007143 5 13 123 147 no 0.750000 7 0.857143 0.007507 0.954802 53.300000 psaC gene psaC psaC 121683 121928 -1 246 SSC 0.003484 2 0 98 2 no 0.000000 2 0.000000 0.003484 1.000000 21.500000 IGS_123 igs psaC|ndhE psaC-ndhE 121929 122159 0 231 SSC 0.010513 9 3 56 66 no 0.375000 5 0.600000 0.010570 1.000000 41.100000 ndhE gene ndhE ndhE 122160 122465 -1 306 SSC 0.004435 4 0 5 16 no 0.375000 5 0.600000 0.004435 1.000000 29.900000 IGS_124 igs ndhE|ndhG ndhE-ndhG 122466 122760 0 295 SSC 0.031835 19 38 118 50 no 0.500000 6 0.666667 0.029608 0.942373 57.400000 ndhG gene ndhG ndhG 122761 123297 -1 537 SSC 0.007382 11 0 5 10 no 0.500000 6 0.666667 0.007382 1.000000 39.300000 IGS_125 igs ndhG|ndhI ndhG-ndhI 123298 123683 0 386 SSC 0.014526 14 8 26 75 no 0.375000 5 0.600000 0.014834 0.979275 42.500000 ndhI gene ndhI ndhI 123684 124187 -1 504 SSC 0.002551 4 0 7 0 no 0.375000 5 0.600000 0.002551 1.000000 32.200000 IGS_126 igs ndhI|ndhA ndhI-ndhA 124188 124282 0 95 SSC 0.015414 5 9 45 74 no 0.500000 6 0.666667 0.015518 0.957895 49.500000 ndhA_part2 gene ndhA ndhA 124283 124821 -1 539 SSC 0.006759 12 0 3 4 no 0.375000 5 0.600000 0.006759 1.000000 36.800000 IGS_127 igs ndhA|ndhA ndhA-ndhA 124822 125924 0 1103 SSC 0.011732 39 9 19 49 no 0.750000 7 0.857143 0.011642 0.999093 51.100000 ndhA_part1 gene ndhA ndhA 125925 126477 -1 553 SSC 0.003358 6 0 18 112 no 0.500000 6 0.666667 0.003358 1.000000 37.600000 IGS_128 igs ndhA|ndhH ndhA-ndhH 126478 126478 0 1 SSC 0.000000 0 0 116 111 no 0.000000 1 0.000000 NA 1.000000 27.100000 ndhH gene ndhH ndhH 126479 127666 -1 1188 SSC 0.004449 17 0 117 46 no 0.625000 6 0.833333 0.004449 1.000000 44.000000 IGS_129 igs ndhH|rps15 ndhH-rps15 127667 127760 0 94 SSC 0.020517 4 0 15 14 no 0.000000 3 0.000000 0.020517 1.000000 34.400000 rps15 gene rps15 rps15 127761 128033 -1 273 SSC 0.007980 8 0 15 74 no 0.500000 5 0.800000 0.007980 1.000000 36.500000 IGS_130 igs rps15|ycf1 rps15-ycf1 128034 128389 0 356 SSC 0.009223 8 1 3 63 no 0.500000 6 0.666667 0.008536 1.000000 36.800000 ycf1 gene ycf1 ycf1 128390 133885 -1 5496 SSC 0.012910 204 49 28 59 no 1.000000 8 1.000000 0.012869 0.998908 51.100000 IGS_131 igs ycf1|trnN-GUU ycf1-trnN-GUU 133886 134220 0 335 IRa 0.003625 3 0 300 300 no 0.250000 4 0.500000 0.003625 1.000000 41.900000 trnN-GUU tRNA trnN-GUU trnN-GUU 134221 134292 1 72 IRa 0.000000 0 0 13 240 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_132 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 134293 134896 0 604 IRa 0.003962 6 16 85 100 no 0.375000 5 0.600000 0.004002 1.000000 44.600000 trnR-ACG tRNA trnR-ACG trnR-ACG 134897 134970 -1 74 IRa 0.000000 0 0 143 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_133 igs trnR-ACG|rrn5 trnR-ACG-rrn5 134971 135227 0 257 IRa 0.003196 2 2 217 300 no 0.375000 5 0.600000 0.003204 1.000000 44.100000 rrn5 rRNA rrn5 rrn5 135228 135348 -1 121 IRa 0.000000 0 0 193 300 no 0.000000 1 0.000000 0.000000 1.000000 33.200000 IGS_134 igs rrn5|rrn4.5 rrn5-rrn4.5 135349 135604 0 256 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5 rRNA rrn4.5 rrn4.5 135605 135707 -1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_135 igs rrn4.5|rrn23 rrn4.5-rrn23 135708 135805 0 98 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23 rRNA rrn23 rrn23 135806 138614 -1 2809 IRa 0.000242 2 0 300 300 no 0.125000 3 0.333333 0.000242 1.000000 39.800000 IGS_136 igs rrn23|trnA-UGC rrn23-trnA-UGC 138615 138777 0 163 IRa 0.000000 0 0 300 168 no 0.000000 1 0.000000 0.000000 1.000000 31.400000 trnA-UGC tRNA trnA-UGC trnA-UGC 138778 138812 -1 35 IRa 0.000000 0 0 300 133 no 0.000000 1 0.000000 0.000000 1.000000 28.700000 IGS_137 igs trnA-UGC|orf56 trnA-UGC-orf56 138813 138982 0 170 IRa 0.001471 1 0 300 300 no 0.125000 2 0.500000 0.001471 1.000000 37.500000 orf56 gene orf56 orf56 138983 139090 1 108 IRa 0.000000 0 0 36 300 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_138 igs orf56|trnA-UGC orf56-trnA-UGC 139091 139607 0 517 IRa 0.000000 0 10 144 192 no 0.125000 2 0.500000 0.000000 1.000000 38.800000 trnA-UGC tRNA trnA-UGC trnA-UGC 139608 139645 -1 38 IRa 0.000000 0 0 300 154 no 0.000000 1 0.000000 0.000000 1.000000 30.300000 IGS_139 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 139646 139715 0 70 IRa 0.000000 0 0 300 84 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 trnI-GAU tRNA trnI-GAU trnI-GAU 139716 139750 -1 35 IRa 0.000000 0 0 300 49 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_140 igs trnI-GAU|ycf68 trnI-GAU-ycf68 139751 140208 0 458 IRa 0.000546 1 0 300 72 no 0.125000 2 0.500000 0.000546 1.000000 30.300000 ycf68 gene ycf68 ycf68 140209 140607 -1 399 IRa 0.001074 1 9 300 181 no 0.250000 3 0.666667 0.001087 1.000000 42.600000 IGS_141 igs ycf68|trnI-GAU ycf68-trnI-GAU 140608 140706 0 99 IRa 0.000000 0 0 300 82 no 0.000000 1 0.000000 0.000000 1.000000 24.900000 trnI-GAU tRNA trnI-GAU trnI-GAU 140707 140748 -1 42 IRa 0.000000 0 0 300 40 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_142 igs trnI-GAU|rrn16 trnI-GAU-rrn16 140749 141042 0 294 IRa 0.001458 1 0 300 300 no 0.000000 2 0.000000 0.001458 1.000000 34.800000 rrn16 rRNA rrn16 rrn16 141043 142533 -1 1491 IRa 0.000000 0 0 253 130 no 0.000000 1 0.000000 0.000000 1.000000 34.800000 IGS_143 igs rrn16|trnV-GAC rrn16-trnV-GAC 142534 142774 0 241 IRa 0.001037 1 1 300 44 no 0.125000 3 0.333333 0.001039 1.000000 25.900000 trnV-GAC tRNA trnV-GAC trnV-GAC 142775 142846 -1 72 IRa 0.003472 1 0 110 62 no 0.125000 2 0.500000 0.003472 1.000000 29.000000 IGS_144 igs trnV-GAC|rps12 trnV-GAC-rps12 142847 144679 0 1833 IRa 0.002203 12 40 27 300 no 1.000000 8 1.000000 0.002173 0.999454 49.500000 rps12_part2 gene rps12 rps12 144680 145477 1 798 IRa 0.002417 5 0 276 226 no 0.500000 6 0.666667 0.002417 1.000000 51.200000 IGS_145 igs rps12|rps7 rps12-rps7 145478 145530 0 53 IRa 0.000000 0 0 155 173 no 0.000000 1 0.000000 0.000000 1.000000 30.400000 rps7 gene rps7 rps7 145531 145998 1 468 IRa 0.000534 1 0 208 4 no 0.125000 2 0.500000 0.000534 1.000000 25.400000 IGS_146 igs rps7|ndhB rps7-ndhB 145999 146320 0 322 IRa 0.003327 2 0 294 300 no 0.000000 2 0.000000 0.003327 1.000000 36.500000 IGS_147 igs ndhB|trnL-CAA ndhB-trnL-CAA 148535 149113 0 579 IRa 0.000740 1 0 300 142 no 0.000000 2 0.000000 0.000740 1.000000 35.800000 trnL-CAA tRNA trnL-CAA trnL-CAA 149114 149194 1 81 IRa 0.000000 0 0 300 61 no 0.000000 1 0.000000 0.000000 1.000000 23.300000 IGS_148 igs trnL-CAA|ycf15 trnL-CAA-ycf15 149195 149933 0 739 IRa 0.004011 6 1 300 118 no 0.375000 5 0.600000 0.004012 1.000000 43.900000 ycf15 gene ycf15 ycf15 149934 150071 -1 138 IRa 0.001812 1 0 21 300 no 0.125000 2 0.500000 0.001812 1.000000 24.400000 IGS_149 igs ycf15|ycf2 ycf15-ycf2 150072 150212 0 141 IRa 0.000000 0 0 19 285 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 ycf2 gene ycf2 ycf2 150213 157073 -1 6861 IRa 0.001067 21 24 160 300 no 0.750000 7 0.857143 0.001070 1.000000 46.100000 IGS_150 igs ycf2|trnI-CAU ycf2-trnI-CAU 157074 157161 0 88 IRa 0.000000 0 0 300 233 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-CAU tRNA trnI-CAU trnI-CAU 157162 157235 1 74 IRa 0.000000 0 0 300 159 no 0.000000 1 0.000000 0.000000 1.000000 30.700000 IGS_151 igs trnI-CAU|rpl23 trnI-CAU-rpl23 157236 157400 0 165 IRa 0.002597 1 0 300 70 no 0.000000 2 0.000000 0.002597 1.000000 25.900000 rpl23 gene rpl23 rpl23 157401 157682 1 282 IRa 0.000887 1 0 5 3 no 0.125000 2 0.500000 0.000887 1.000000 22.200000 IGS_152 igs rpl23|rpl2 rpl23-rpl2 157683 157700 0 18 IRa 0.029762 1 0 211 50 no 0.000000 2 0.000000 NA 1.000000 42.800000 IGS_153 igs rpl2|rps19 rpl2-rps19 159219 159291 0 73 IRa 0.018591 4 0 300 77 no 0.125000 3 0.333333 0.018591 1.000000 42.100000 rps19 gene rps19 rps19 159292 159570 1 279 IRa 0.004352 3 0 23 205 no 0.250000 4 0.500000 0.004352 1.000000 28.500000 IGS_154 igs rps19|rpl22 rps19-rpl22 159571 159608 0 38 IRa 0.000000 0 0 45 167 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 rpl22 gene rpl22 rpl22 159609 159971 1 363 IRa 0.014206 10 124 83 36 no 0.500000 6 0.666667 0.007527 0.672176 37.900000 trnH-GUG tRNA trnH-GUG trnH-GUG 159873 159946 -1 74 LSC 0.000000 0 74 8 61 no 0.000000 2 0.000000 NA 0.000000 6.900000 IGS_156 igs trnH-GUG|psbA trnH-GUG-psbA 159947 160416 0 470 LSC 0.040476 3393 6608 82 19 no 1.000000 8 1.000000 0.007419 0.989371 78.900000