feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 18 92 -1 75 LSC 0.000000 0 0 3 122 no 0.000000 1 0.000000 NA 1.000000 19.000000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 93 479 0 387 LSC 0.028721 11 4 78 300 no 1.000000 2 1.000000 NA 0.989664 62.600000 psbA gene psbA psbA 480 1541 -1 1062 LSC 0.000942 1 0 5 75 no 1.000000 2 1.000000 NA 1.000000 44.700000 IGS_002 igs psbA|trnK-UUU psbA-trnK-UUU 1542 1773 0 232 LSC 0.008621 2 0 149 51 no 1.000000 2 1.000000 NA 1.000000 46.300000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1774 1802 -1 29 LSC 0.000000 0 0 70 22 no 0.000000 1 0.000000 NA 1.000000 20.400000 matK gene matK matK 2119 3636 -1 1518 LSC 0.008564 13 0 8 179 no 1.000000 2 1.000000 NA 1.000000 49.200000 IGS_005 igs matK|trnK-UUU matK-trnK-UUU 3637 4365 0 729 LSC 0.004121 3 1 17 120 no 1.000000 2 1.000000 NA 0.998628 47.500000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4366 4402 -1 37 LSC 0.000000 0 0 38 83 no 0.000000 1 0.000000 NA 1.000000 21.600000 IGS_006 igs trnK-UUU|rbcL trnK-UUU-rbcL 4403 5179 0 777 LSC 0.019608 15 12 75 300 no 1.000000 2 1.000000 NA 0.984556 62.100000 rbcL gene rbcL rbcL 5180 6607 -1 1428 LSC 0.003501 5 0 13 277 no 1.000000 2 1.000000 NA 1.000000 46.700000 IGS_007 igs rbcL|atpB rbcL-atpB 6608 7373 0 766 LSC 0.010471 8 2 283 57 no 1.000000 2 1.000000 NA 0.997389 54.300000 atpB gene atpB atpB 7374 8870 1 1497 LSC 0.002672 4 0 13 300 no 1.000000 2 1.000000 NA 1.000000 46.300000 atpE gene atpE atpE 8867 9268 1 402 LSC 0.004975 2 0 300 15 no 1.000000 2 1.000000 NA 1.000000 43.600000 IGS_009 igs atpE|trnM-CAU atpE-trnM-CAU 9269 9422 0 154 LSC 0.012987 2 0 71 153 no 1.000000 2 1.000000 NA 1.000000 50.300000 trnM-CAU tRNA trnM-CAU trnM-CAU 9423 9494 -1 72 LSC 0.000000 0 0 96 81 no 0.000000 1 0.000000 NA 1.000000 24.800000 IGS_010 igs trnM-CAU|trnV-UAC trnM-CAU-trnV-UAC 9495 9666 0 172 LSC 0.005814 1 0 168 80 no 1.000000 2 1.000000 NA 1.000000 46.800000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 9667 9705 1 39 LSC 0.000000 0 0 90 41 no 0.000000 1 0.000000 NA 1.000000 21.800000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 10295 10331 1 37 LSC 0.000000 0 0 24 13 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_013 igs trnV-UAC|ndhC trnV-UAC-ndhC 10332 10585 0 254 LSC 0.011811 3 0 61 76 no 1.000000 2 1.000000 NA 1.000000 48.900000 ndhC gene ndhC ndhC 10586 10948 1 363 LSC 0.002755 1 0 25 300 no 1.000000 2 1.000000 NA 1.000000 42.300000 IGS_014 igs ndhC|ndhK ndhC-ndhK 10949 10989 0 41 LSC 0.000000 0 0 286 296 no 0.000000 1 0.000000 NA 1.000000 33.800000 ndhK gene ndhK ndhK 10990 11625 1 636 LSC 0.004717 3 0 300 4 no 1.000000 2 1.000000 NA 1.000000 46.800000 IGS_015 igs ndhK|ndhJ ndhK-ndhJ 11626 11795 0 170 LSC 0.017857 3 2 1 300 no 1.000000 2 1.000000 NA 0.988235 49.000000 ndhJ gene ndhJ ndhJ 11796 12272 1 477 LSC 0.000000 0 0 15 152 no 0.000000 1 0.000000 NA 1.000000 23.600000 IGS_016 igs ndhJ|trnF-GAA ndhJ-trnF-GAA 12273 12992 0 720 LSC 0.014045 10 8 300 286 no 1.000000 2 1.000000 NA 0.988889 67.900000 trnF-GAA tRNA trnF-GAA trnF-GAA 12993 13065 -1 73 LSC 0.000000 0 0 38 213 no 0.000000 1 0.000000 NA 1.000000 21.600000 IGS_017 igs trnF-GAA|trnL-UAA trnF-GAA-trnL-UAA 13066 13400 0 335 LSC 0.005970 2 0 111 300 no 1.000000 2 1.000000 NA 1.000000 50.000000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 13401 13450 -1 50 LSC 0.000000 0 0 99 300 no 0.000000 1 0.000000 NA 1.000000 26.200000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 13988 14024 -1 37 LSC 0.000000 0 0 36 19 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_020 igs trnL-UAA|trnT-UGU trnL-UAA-trnT-UGU 14025 15299 0 1275 LSC 0.016575 21 8 73 96 no 1.000000 2 1.000000 NA 0.993725 59.400000 trnT-UGU tRNA trnT-UGU trnT-UGU 15300 15372 1 73 LSC 0.000000 0 0 15 23 no 0.000000 1 0.000000 NA 1.000000 19.900000 IGS_021 igs trnT-UGU|rps4 trnT-UGU-rps4 15373 15667 0 295 LSC 0.010381 3 6 88 26 no 1.000000 2 1.000000 NA 0.979661 47.400000 rps4 gene rps4 rps4 15668 16273 1 606 LSC 0.003300 2 0 116 26 no 1.000000 2 1.000000 NA 1.000000 47.600000 IGS_022 igs rps4|trnS-GGA rps4-trnS-GGA 16274 16497 0 224 LSC 0.026786 6 0 126 104 no 1.000000 2 1.000000 NA 1.000000 60.700000 trnS-GGA tRNA trnS-GGA trnS-GGA 16498 16585 -1 88 LSC 0.000000 0 0 67 16 no 0.000000 1 0.000000 NA 1.000000 20.000000 IGS_023 igs trnS-GGA|ycf3 trnS-GGA-ycf3 16586 16836 0 251 LSC 0.023904 6 0 155 150 no 1.000000 2 1.000000 NA 1.000000 62.500000 ycf3 gene ycf3 ycf3 16837 18784 1 1948 LSC 0.007191 14 1 0 82 no 1.000000 2 1.000000 NA 0.999487 47.000000 IGS_024 igs ycf3|psaA ycf3-psaA 18785 19697 0 913 LSC 0.030973 28 9 300 29 no 1.000000 2 1.000000 NA 0.990142 64.700000 psaA gene psaA psaA 19698 21950 1 2253 LSC 0.002663 6 0 92 300 no 1.000000 2 1.000000 NA 1.000000 50.600000 IGS_025 igs psaA|psaB psaA-psaB 21951 21975 0 25 LSC 0.000000 0 0 165 300 no 0.000000 1 0.000000 NA 1.000000 31.100000 psaB gene psaB psaB 21976 24180 1 2205 LSC 0.002268 5 0 190 25 no 1.000000 2 1.000000 NA 1.000000 45.500000 IGS_026 igs psaB|rps14 psaB-rps14 24181 24300 0 120 LSC 0.025000 3 0 144 39 no 1.000000 2 1.000000 NA 1.000000 54.800000 rps14 gene rps14 rps14 24301 24603 1 303 LSC 0.009901 3 0 66 28 no 1.000000 2 1.000000 NA 1.000000 45.400000 IGS_027 igs rps14|trnfM-CAU rps14-trnfM-CAU 24604 24771 0 168 LSC 0.011905 2 0 27 154 no 1.000000 2 1.000000 NA 1.000000 46.400000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 24772 24845 1 74 LSC 0.000000 0 0 26 80 no 0.000000 1 0.000000 NA 1.000000 20.700000 IGS_028 igs trnfM-CAU|trnG-UCC trnfM-CAU-trnG-UCC 24846 24960 0 115 LSC 0.008696 1 0 100 76 no 1.000000 2 1.000000 NA 1.000000 48.200000 trnG-UCC tRNA trnG-UCC trnG-UCC 24961 25031 -1 71 LSC 0.000000 0 0 34 5 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_029 igs trnG-UCC|psbZ trnG-UCC-psbZ 25032 25552 0 521 LSC 0.007678 4 0 105 300 no 1.000000 2 1.000000 NA 1.000000 54.400000 psbZ gene psbZ psbZ 25553 25741 -1 189 LSC 0.000000 0 0 209 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_030 igs psbZ|trnS-UGA psbZ-trnS-UGA 25742 26115 0 374 LSC 0.000000 0 20 300 56 no 1.000000 2 1.000000 NA 0.946524 48.000000 trnS-UGA tRNA trnS-UGA trnS-UGA 26116 26207 1 92 LSC 0.010870 1 0 300 28 no 1.000000 2 1.000000 NA 1.000000 45.900000 IGS_031 igs trnS-UGA|psbC trnS-UGA-psbC 26208 26412 0 205 LSC 0.062500 12 13 35 300 no 1.000000 2 1.000000 NA 0.936585 74.400000 psbC gene psbC psbC 26413 27834 -1 1422 LSC 0.002110 3 0 104 300 no 1.000000 2 1.000000 NA 1.000000 52.800000 psbD gene psbD psbD 27782 28843 -1 1062 LSC 0.000942 1 0 142 300 no 1.000000 2 1.000000 NA 1.000000 54.900000 IGS_033 igs psbD|trnT-GGU psbD-trnT-GGU 28844 30244 0 1401 LSC 0.014329 19 75 296 185 no 1.000000 2 1.000000 NA 0.946467 70.500000 trnT-GGU tRNA trnT-GGU trnT-GGU 30245 30316 -1 72 LSC 0.000000 0 0 63 113 no 0.000000 1 0.000000 NA 1.000000 23.500000 IGS_034 igs trnT-GGU|trnE-UUC trnT-GGU-trnE-UUC 30317 31100 0 784 LSC 0.006452 5 9 135 300 no 1.000000 2 1.000000 NA 0.988520 58.700000 trnE-UUC tRNA trnE-UUC trnE-UUC 31101 31173 1 73 LSC 0.000000 0 0 107 233 no 0.000000 1 0.000000 NA 1.000000 26.800000 IGS_035 igs trnE-UUC|trnY-GUA trnE-UUC-trnY-GUA 31174 31239 0 66 LSC 0.000000 0 0 180 167 no 0.000000 1 0.000000 NA 1.000000 31.300000 trnY-GUA tRNA trnY-GUA trnY-GUA 31240 31323 1 84 LSC 0.000000 0 0 246 83 no 0.000000 1 0.000000 NA 1.000000 25.000000 IGS_036 igs trnY-GUA|trnD-GUC trnY-GUA-trnD-GUC 31324 31766 0 443 LSC 0.015909 7 3 300 116 no 1.000000 2 1.000000 NA 0.993228 59.000000 trnD-GUC tRNA trnD-GUC trnD-GUC 31767 31840 1 74 LSC 0.000000 0 0 199 42 no 0.000000 1 0.000000 NA 1.000000 21.900000 IGS_037 igs trnD-GUC|psbM trnD-GUC-psbM 31841 32254 0 414 LSC 0.014815 6 9 273 8 no 1.000000 2 1.000000 NA 0.978261 51.100000 psbM gene psbM psbM 32255 32359 1 105 LSC 0.009524 1 0 81 38 no 1.000000 2 1.000000 NA 1.000000 45.800000 IGS_038 igs psbM|petN psbM-petN 32360 33103 0 744 LSC 0.028226 21 0 96 124 no 1.000000 2 1.000000 NA 1.000000 67.200000 petN gene petN petN 33104 33193 -1 90 LSC 0.000000 0 0 60 34 no 0.000000 1 0.000000 NA 1.000000 21.300000 IGS_039 igs petN|trnC-GCA petN-trnC-GCA 33194 34178 0 985 LSC 0.015385 15 10 150 80 no 1.000000 2 1.000000 NA 0.989848 59.600000 trnC-GCA tRNA trnC-GCA trnC-GCA 34179 34258 -1 80 LSC 0.000000 0 0 3 0 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_040 igs trnC-GCA|rpoB trnC-GCA-rpoB 34259 35423 0 1165 LSC 0.011226 13 7 83 101 no 1.000000 2 1.000000 NA 0.993991 57.000000 rpoB gene rpoB rpoB 35424 38636 1 3213 LSC 0.004357 14 0 3 125 no 1.000000 2 1.000000 NA 1.000000 43.000000 IGS_041 igs rpoB|rpoC1 rpoB-rpoC1 38637 38662 0 26 LSC 0.000000 0 0 23 99 no 0.000000 1 0.000000 NA 1.000000 20.500000 rpoC1 gene rpoC1 rpoC1 38663 41511 1 2849 LSC 0.006318 18 0 49 300 no 1.000000 2 1.000000 NA 1.000000 48.200000 IGS_042 igs rpoC1|rpoC2 rpoC1-rpoC2 41512 41701 0 190 LSC 0.000000 0 0 48 120 no 0.000000 1 0.000000 NA 1.000000 22.400000 rpoC2 gene rpoC2 rpoC2 41702 45871 1 4170 LSC 0.009366 39 6 238 88 no 1.000000 2 1.000000 NA 0.998561 50.900000 IGS_043 igs rpoC2|rps2 rpoC2-rps2 45872 46106 0 235 LSC 0.017021 4 0 47 300 no 1.000000 2 1.000000 NA 1.000000 50.800000 rps2 gene rps2 rps2 46107 46817 1 711 LSC 0.001406 1 0 44 16 no 1.000000 2 1.000000 NA 1.000000 45.800000 IGS_044 igs rps2|atpI rps2-atpI 46818 47066 0 249 LSC 0.012048 3 0 187 95 no 1.000000 2 1.000000 NA 1.000000 51.600000 atpI gene atpI atpI 47067 47813 1 747 LSC 0.005355 4 0 94 104 no 1.000000 2 1.000000 NA 1.000000 53.900000 IGS_045 igs atpI|atpH atpI-atpH 47814 48667 0 854 LSC 0.010551 9 1 252 272 no 1.000000 2 1.000000 NA 0.998829 64.900000 atpH gene atpH atpH 48668 48913 1 246 LSC 0.000000 0 0 72 26 no 0.000000 1 0.000000 NA 1.000000 20.700000 IGS_046 igs atpH|atpF atpH-atpF 48914 49006 0 93 LSC 0.032258 3 0 300 200 no 1.000000 2 1.000000 NA 1.000000 71.000000 atpF gene atpF atpF 49007 50295 1 1289 LSC 0.006240 8 7 49 67 no 1.000000 2 1.000000 NA 0.994569 51.500000 IGS_047 igs atpF|atpA atpF-atpA 50296 50379 0 84 LSC 0.012346 1 3 202 300 no 1.000000 2 1.000000 NA 0.964286 63.000000 atpA gene atpA atpA 50380 51912 1 1533 LSC 0.001957 3 0 16 82 no 1.000000 2 1.000000 NA 1.000000 46.000000 IGS_048 igs atpA|trnR-UCU atpA-trnR-UCU 51913 52242 0 330 LSC 0.025397 8 15 123 86 no 1.000000 2 1.000000 NA 0.954545 63.400000 trnR-UCU tRNA trnR-UCU trnR-UCU 52243 52314 -1 72 LSC 0.000000 0 0 57 14 no 0.000000 1 0.000000 NA 1.000000 19.800000 IGS_049 igs trnR-UCU|trnG-GCC trnR-UCU-trnG-GCC 52315 52578 0 264 LSC 0.044000 11 14 129 155 yes 1.000000 2 1.000000 NA 0.946970 76.900000 trnG-GCC_part2 tRNA trnG-GCC trnG-GCC 52579 52627 -1 49 LSC 0.000000 0 0 56 106 no 0.000000 1 0.000000 NA 1.000000 22.900000 trnG-GCC_part1 tRNA trnG-GCC trnG-GCC 53322 53344 -1 23 LSC 0.000000 0 0 12 135 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_052 igs trnG-GCC|trnS-GCU trnG-GCC-trnS-GCU 53345 53956 0 612 LSC 0.016420 10 3 35 300 no 1.000000 2 1.000000 NA 0.995098 56.300000 trnS-GCU tRNA trnS-GCU trnS-GCU 53957 54043 1 87 LSC 0.000000 0 6 107 229 no 1.000000 2 1.000000 NA 0.931034 49.800000 IGS_053 igs trnS-GCU|psbI trnS-GCU-psbI 54044 54072 0 29 LSC 0.000000 0 0 194 200 no 0.000000 1 0.000000 NA 1.000000 33.300000 psbI gene psbI psbI 54073 54183 -1 111 LSC 0.000000 0 0 223 89 no 0.000000 1 0.000000 NA 1.000000 25.400000 IGS_054 igs psbI|psbK psbI-psbK 54184 54654 0 471 LSC 0.017204 8 6 300 215 no 1.000000 2 1.000000 NA 0.987261 67.200000 psbK gene psbK psbK 54655 54840 -1 186 LSC 0.000000 0 0 34 29 no 0.000000 1 0.000000 NA 1.000000 20.900000 IGS_055 igs psbK|trnQ-UUG psbK-trnQ-UUG 54841 55287 0 447 LSC 0.042697 19 2 220 150 yes 1.000000 2 1.000000 NA 0.995526 76.800000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 55288 55359 1 72 LSC 0.000000 0 0 89 78 no 0.000000 1 0.000000 NA 1.000000 24.600000 IGS_056 igs trnQ-UUG|accD trnQ-UUG-accD 55360 56372 0 1013 LSC 0.025316 24 65 161 110 no 1.000000 2 1.000000 NA 0.935834 70.800000 accD gene accD accD 56373 57842 1 1470 LSC 0.002721 4 0 69 64 no 1.000000 2 1.000000 NA 1.000000 50.100000 IGS_057 igs accD|psaI accD-psaI 57843 58246 0 404 LSC 0.024814 10 1 284 68 no 1.000000 2 1.000000 NA 0.997525 59.300000 psaI gene psaI psaI 58247 58351 1 105 LSC 0.009524 1 0 101 119 no 1.000000 2 1.000000 NA 1.000000 50.600000 IGS_058 igs psaI|ycf4 psaI-ycf4 58352 58552 0 201 LSC 0.015228 3 4 36 152 no 1.000000 2 1.000000 NA 0.980100 50.800000 ycf4 gene ycf4 ycf4 58553 59137 1 585 LSC 0.001709 1 0 1 8 no 1.000000 2 1.000000 NA 1.000000 44.500000 IGS_059 igs ycf4|cemA ycf4-cemA 59138 59631 0 494 LSC 0.015487 7 42 300 4 no 1.000000 2 1.000000 NA 0.914980 54.400000 cemA gene cemA cemA 59632 60321 1 690 LSC 0.018841 13 0 4 72 no 1.000000 2 1.000000 NA 1.000000 54.900000 IGS_060 igs cemA|petA cemA-petA 60322 60513 0 192 LSC 0.010417 2 0 58 16 no 1.000000 2 1.000000 NA 1.000000 44.700000 petA gene petA petA 60514 61476 1 963 LSC 0.003115 3 0 40 152 no 1.000000 2 1.000000 NA 1.000000 48.500000 IGS_061 igs petA|psbJ petA-psbJ 61477 62362 0 886 LSC 0.009604 8 53 82 300 no 1.000000 2 1.000000 NA 0.940181 59.900000 psbJ gene psbJ psbJ 62363 62485 -1 123 LSC 0.000000 0 0 15 300 no 0.000000 1 0.000000 NA 1.000000 19.900000 IGS_062 igs psbJ|psbL psbJ-psbL 62486 62636 0 151 LSC 0.000000 0 0 138 169 no 0.000000 1 0.000000 NA 1.000000 29.100000 psbL gene psbL psbL 62637 62768 -1 132 LSC 0.000000 0 0 289 37 no 0.000000 1 0.000000 NA 1.000000 21.500000 IGS_063 igs psbL|psbF psbL-psbF 62769 62775 0 7 LSC 0.000000 0 0 300 30 no 0.000000 1 0.000000 NA 1.000000 21.000000 psbF gene psbF psbF 62776 62895 -1 120 LSC 0.008333 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 57.300000 IGS_064 igs psbF|psbE psbF-psbE 62896 62904 0 9 LSC 0.000000 0 0 89 300 no 0.000000 1 0.000000 NA 1.000000 25.400000 psbE gene psbE psbE 62905 63156 -1 252 LSC 0.000000 0 0 98 75 no 0.000000 1 0.000000 NA 1.000000 24.400000 IGS_065 igs psbE|petL psbE-petL 63157 64385 0 1229 LSC 0.010708 13 15 300 116 no 1.000000 2 1.000000 NA 0.987795 59.800000 petL gene petL petL 64386 64481 1 96 LSC 0.000000 0 0 92 20 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_066 igs petL|petG petL-petG 64482 64625 0 144 LSC 0.006944 1 0 188 151 no 1.000000 2 1.000000 NA 1.000000 52.800000 petG gene petG petG 64626 64739 1 114 LSC 0.000000 0 0 123 37 no 0.000000 1 0.000000 NA 1.000000 21.500000 IGS_067 igs petG|trnW-CCA petG-trnW-CCA 64740 64894 0 155 LSC 0.025806 4 0 237 150 no 1.000000 2 1.000000 NA 1.000000 63.600000 trnW-CCA tRNA trnW-CCA trnW-CCA 64895 64968 -1 74 LSC 0.000000 0 0 39 76 no 0.000000 1 0.000000 NA 1.000000 21.700000 IGS_068 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 64969 65150 0 182 LSC 0.016484 3 0 113 235 no 1.000000 2 1.000000 NA 1.000000 55.500000 trnP-UGG tRNA trnP-UGG trnP-UGG 65151 65224 -1 74 LSC 0.000000 0 0 53 161 no 0.000000 1 0.000000 NA 1.000000 22.700000 IGS_069 igs trnP-UGG|psaJ trnP-UGG-psaJ 65225 65429 0 205 LSC 0.004878 1 0 127 4 no 1.000000 2 1.000000 NA 1.000000 40.600000 psaJ gene psaJ psaJ 65430 65564 1 135 LSC 0.014815 2 0 43 59 no 1.000000 2 1.000000 NA 1.000000 49.200000 IGS_070 igs psaJ|rpl33 psaJ-rpl33 65565 66056 0 492 LSC 0.012245 6 2 4 91 no 1.000000 2 1.000000 NA 0.995935 49.200000 rpl33 gene rpl33 rpl33 66057 66257 1 201 LSC 0.004975 1 0 42 7 no 1.000000 2 1.000000 NA 1.000000 40.900000 IGS_071 igs rpl33|rps18 rpl33-rps18 66258 66468 0 211 LSC 0.014218 3 0 109 300 no 1.000000 2 1.000000 NA 1.000000 53.900000 rps18 gene rps18 rps18 66469 66744 1 276 LSC 0.000000 0 0 118 29 no 0.000000 1 0.000000 NA 1.000000 20.900000 IGS_072 igs rps18|rpl20 rps18-rpl20 66745 66988 0 244 LSC 0.054852 13 7 300 36 no 1.000000 2 1.000000 NA 0.971311 72.100000 rpl20 gene rpl20 rpl20 66989 67381 -1 393 LSC 0.007634 3 0 9 32 no 1.000000 2 1.000000 NA 1.000000 44.500000 IGS_073 igs rpl20|rps12 rpl20-rps12 67382 68194 0 813 LSC 0.009988 8 12 217 268 no 1.000000 2 1.000000 NA 0.985240 65.900000 rps12_part1 gene rps12 rps12 68195 68320 -1 126 LSC 0.000000 0 0 30 142 no 0.000000 1 0.000000 NA 1.000000 21.000000 IGS_074 igs rps12|clpP rps12-clpP 68321 68501 0 181 LSC 0.005525 1 0 156 124 no 1.000000 2 1.000000 NA 1.000000 50.000000 clpP gene clpP clpP 68502 70578 -1 2077 LSC 0.007274 15 15 38 103 no 1.000000 2 1.000000 NA 0.992778 50.300000 IGS_075 igs clpP|psbB clpP-psbB 70579 71024 0 446 LSC 0.024664 11 0 44 300 no 1.000000 2 1.000000 NA 1.000000 58.000000 psbB gene psbB psbB 71025 72551 1 1527 LSC 0.002620 4 0 52 45 no 1.000000 2 1.000000 NA 1.000000 48.600000 IGS_076 igs psbB|psbT psbB-psbT 72552 72730 0 179 LSC 0.005587 1 0 291 48 no 1.000000 2 1.000000 NA 1.000000 44.300000 psbT gene psbT psbT 72731 72838 1 108 LSC 0.009259 1 0 133 194 no 1.000000 2 1.000000 NA 1.000000 52.800000 IGS_077 igs psbT|psbN psbT-psbN 72839 72896 0 58 LSC 0.000000 0 1 59 136 no 1.000000 2 1.000000 NA 0.982759 43.600000 psbN gene psbN psbN 72897 73028 -1 132 LSC 0.000000 0 0 117 4 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_078 igs psbN|psbH psbN-psbH 73029 73140 0 112 LSC 0.008929 1 0 249 300 no 1.000000 2 1.000000 NA 1.000000 57.600000 psbH gene psbH psbH 73141 73362 1 222 LSC 0.000000 0 0 107 79 no 0.000000 1 0.000000 NA 1.000000 24.700000 IGS_079 igs psbH|petB psbH-petB 73363 73497 0 135 LSC 0.007407 1 0 300 93 no 1.000000 2 1.000000 NA 1.000000 48.700000 petB gene petB petB 73498 74956 1 1459 LSC 0.003429 5 1 55 166 no 1.000000 2 1.000000 NA 0.999315 49.900000 IGS_080 igs petB|petD petB-petD 74957 75161 0 205 LSC 0.004878 1 0 300 190 no 1.000000 2 1.000000 NA 1.000000 54.600000 petD gene petD petD 75162 76354 1 1193 LSC 0.009220 11 0 38 17 no 1.000000 2 1.000000 NA 1.000000 50.300000 IGS_081 igs petD|rpoA petD-rpoA 76355 76586 0 232 LSC 0.012931 3 0 198 45 no 1.000000 2 1.000000 NA 1.000000 48.300000 rpoA gene rpoA rpoA 76587 77588 -1 1002 LSC 0.006986 7 0 44 300 no 1.000000 2 1.000000 NA 1.000000 51.100000 IGS_082 igs rpoA|rps11 rpoA-rps11 77589 77671 0 83 LSC 0.000000 0 0 32 300 no 0.000000 1 0.000000 NA 1.000000 21.100000 rps11 gene rps11 rps11 77672 78088 -1 417 LSC 0.002398 1 0 115 54 no 1.000000 2 1.000000 NA 1.000000 45.400000 IGS_083 igs rps11|rpl36 rps11-rpl36 78089 78431 0 343 LSC 0.019108 6 29 24 41 no 1.000000 2 1.000000 NA 0.915452 54.900000 rpl36 gene rpl36 rpl36 78432 78545 -1 114 LSC 0.008772 1 0 54 129 no 1.000000 2 1.000000 NA 1.000000 46.600000 IGS_084 igs rpl36|rps8 rpl36-rps8 78546 78989 0 444 LSC 0.013667 6 5 72 133 no 1.000000 2 1.000000 NA 0.988739 54.800000 rps8 gene rps8 rps8 78990 79394 -1 405 LSC 0.009877 4 0 107 78 no 1.000000 2 1.000000 NA 1.000000 51.200000 IGS_085 igs rps8|rpl14 rps8-rpl14 79395 79644 0 250 LSC 0.008130 2 4 32 150 no 1.000000 2 1.000000 NA 0.984000 46.100000 rpl14 gene rpl14 rpl14 79645 80013 -1 369 LSC 0.002710 1 0 8 300 no 1.000000 2 1.000000 NA 1.000000 41.100000 IGS_086 igs rpl14|rpl16 rpl14-rpl16 80014 80137 0 124 LSC 0.000000 0 0 218 188 no 0.000000 1 0.000000 NA 1.000000 32.900000 rpl16 gene rpl16 rpl16 80138 81531 -1 1394 LSC 0.010807 15 6 300 31 no 1.000000 2 1.000000 NA 0.995696 52.700000 IGS_087 igs rpl16|rps3 rpl16-rps3 81532 81683 0 152 LSC 0.032895 5 0 47 300 no 1.000000 2 1.000000 NA 1.000000 59.900000 rps3 gene rps3 rps3 81684 82340 -1 657 LSC 0.006088 4 0 46 199 no 1.000000 2 1.000000 NA 1.000000 50.700000 IGS_088 igs rps3|rps19 rps3-rps19 82341 82818 0 478 LSC 0.022523 10 34 165 254 no 1.000000 2 1.000000 NA 0.928870 70.600000 rps19 gene rps19 rps19 82819 83097 -1 279 LSC 0.003584 1 0 55 12 no 1.000000 2 1.000000 NA 1.000000 40.500000 IGS_089 igs rps19|rpl2 rps19-rpl2 83098 83151 0 54 IRb 0.018519 1 0 24 25 no 1.000000 2 1.000000 NA 1.000000 49.900000 rpl2 gene rpl2 rpl2 83152 84639 -1 1488 IRb 0.002016 3 0 41 91 no 1.000000 2 1.000000 NA 1.000000 48.000000 IGS_090 igs rpl2|rpl23 rpl2-rpl23 84640 84657 0 18 IRb 0.000000 0 0 188 73 no 0.000000 1 0.000000 NA 1.000000 24.200000 rpl23 gene rpl23 rpl23 84658 84939 -1 282 IRb 0.003546 1 0 206 300 no 1.000000 2 1.000000 NA 1.000000 54.500000 IGS_091 igs rpl23|ycf2 rpl23-ycf2 84940 85225 0 286 IRb 0.000000 0 0 208 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 ycf2 gene ycf2 ycf2 85226 90460 1 5235 IRb 0.001917 10 18 300 10 no 1.000000 2 1.000000 NA 0.996562 39.700000 IGS_092 igs ycf2|trnL-CAA ycf2-trnL-CAA 90461 91039 0 579 IRb 0.008636 5 0 100 264 no 1.000000 2 1.000000 NA 1.000000 55.800000 trnL-CAA tRNA trnL-CAA trnL-CAA 91040 91120 -1 81 IRb 0.000000 0 0 224 183 no 0.000000 1 0.000000 NA 1.000000 32.500000 IGS_093 igs trnL-CAA|ndhB trnL-CAA-ndhB 91121 91699 0 579 IRb 0.001727 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.300000 ndhB gene ndhB ndhB 91700 93868 -1 2169 IRb 0.000461 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 57.600000 IGS_094 igs ndhB|rps7 ndhB-rps7 93869 94217 0 349 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 34.800000 rps7 gene rps7 rps7 94218 94685 -1 468 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 37.300000 IGS_095 igs rps7|rps12 rps7-rps12 94686 95291 0 606 IRb 0.001661 1 4 300 300 no 1.000000 2 1.000000 NA 0.993399 60.300000 rps12_part2 gene rps12 rps12 95292 95534 -1 243 IRb 0.000000 0 0 277 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_096 igs rps12|trnV-GAC rps12-trnV-GAC 95535 97364 0 1830 IRb 0.001644 3 5 300 115 no 1.000000 2 1.000000 NA 0.997268 52.900000 trnV-GAC tRNA trnV-GAC trnV-GAC 97365 97436 1 72 IRb 0.000000 0 0 176 43 no 0.000000 1 0.000000 NA 1.000000 22.000000 IGS_097 igs trnV-GAC|RS52_r008 trnV-GAC-RS52_r008 97437 97653 0 217 IRb 0.009217 2 0 248 300 no 1.000000 2 1.000000 NA 1.000000 57.800000 RS52_r008 rRNA RS52_r008 RS52_r008 97654 99144 1 1491 IRb 0.000000 0 0 165 300 no 0.000000 1 0.000000 NA 1.000000 37.400000 IGS_098 igs RS52_r008|trnI-GAU RS52_r008-trnI-GAU 99145 99437 0 293 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 99438 99479 1 42 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 100425 100459 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_101 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 100460 100523 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 100524 100561 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 101364 101398 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_104 igs trnA-UGC|RS52_r007 trnA-UGC-RS52_r007 101399 101555 0 157 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 RS52_r007 rRNA RS52_r007 RS52_r007 101556 104370 1 2815 IRb 0.000355 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 56.200000 IGS_105 igs RS52_r007|RS52_r006 RS52_r007-RS52_r006 104371 104470 0 100 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 RS52_r006 rRNA RS52_r006 RS52_r006 104471 104574 1 104 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_106 igs RS52_r006|RS52_r005 RS52_r006-RS52_r005 104575 104795 0 221 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 RS52_r005 rRNA RS52_r005 RS52_r005 104796 104916 1 121 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_107 igs RS52_r005|trnR-ACG RS52_r005-trnR-ACG 104917 105171 0 255 IRb 0.000000 0 0 300 208 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 105172 105245 1 74 IRb 0.000000 0 0 300 134 no 0.000000 1 0.000000 NA 1.000000 28.800000 IGS_108 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 105246 105878 0 633 IRb 0.012638 8 0 300 85 no 1.000000 2 1.000000 NA 1.000000 57.400000 trnN-GUU tRNA trnN-GUU trnN-GUU 105879 105950 -1 72 IRb 0.000000 0 0 19 13 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_109 igs trnN-GUU|ycf1 trnN-GUU-ycf1 105951 106304 0 354 IRb 0.011299 4 0 91 300 no 1.000000 2 1.000000 NA 1.000000 51.900000 ycf1 gene ycf1 ycf1 106305 106793 1 489 IRb 0.101075 47 24 47 6 yes 1.000000 2 1.000000 NA 0.950920 81.200000 ndhF gene ndhF ndhF 106758 109013 -1 2256 SSC 0.435106 818 376 12 0 yes 1.000000 2 1.000000 NA 0.833333 78.700000 IGS_111 igs ndhF|rpl32 ndhF-rpl32 109014 109529 0 516 SSC 0.421412 185 77 4 1 yes 1.000000 2 1.000000 NA 0.850775 79.100000 rpl32 gene rpl32 rpl32 109530 109691 1 162 SSC 0.454545 65 19 0 2 no 1.000000 2 1.000000 NA 0.882716 75.500000 IGS_112 igs rpl32|trnL-UAG rpl32-trnL-UAG 109692 110147 0 456 SSC 0.408115 171 37 0 0 yes 1.000000 2 1.000000 NA 0.918860 79.700000 trnL-UAG tRNA trnL-UAG trnL-UAG 110148 110227 1 80 SSC 0.535714 30 24 3 3 no 1.000000 2 1.000000 NA 0.700000 70.500000 IGS_113 igs trnL-UAG|ccsA trnL-UAG-ccsA 110228 110317 0 90 SSC 0.441558 34 13 1 23 no 1.000000 2 1.000000 NA 0.855556 74.800000 ccsA gene ccsA ccsA 110318 111295 1 978 SSC 0.468013 417 87 12 2 yes 1.000000 2 1.000000 NA 0.911043 82.600000 IGS_114 igs ccsA|ndhD ccsA-ndhD 111296 111568 0 273 SSC 0.445833 107 33 1 0 no 1.000000 2 1.000000 NA 0.879121 75.400000 ndhD gene ndhD ndhD 111569 113068 -1 1500 SSC 0.443086 580 191 3 1 yes 1.000000 2 1.000000 NA 0.872667 81.500000 IGS_115 igs ndhD|psaC ndhD-psaC 113069 113195 0 127 SSC 0.514851 52 26 0 5 no 1.000000 2 1.000000 NA 0.795276 73.000000 psaC gene psaC psaC 113196 113441 -1 246 SSC 0.495614 113 18 9 0 yes 1.000000 2 1.000000 NA 0.926829 76.700000 IGS_116 igs psaC|ndhE psaC-ndhE 113442 113745 0 304 SSC 0.446097 120 35 9 0 no 1.000000 2 1.000000 NA 0.884868 75.600000 ndhE gene ndhE ndhE 113746 114051 -1 306 SSC 0.466387 111 68 2 15 yes 1.000000 2 1.000000 NA 0.777778 72.800000 IGS_117 igs ndhE|ndhG ndhE-ndhG 114052 114280 0 229 SSC 0.462500 74 69 26 0 no 1.000000 2 1.000000 NA 0.698690 70.300000 ndhG gene ndhG ndhG 114281 114811 -1 531 SSC 0.476526 203 105 0 3 yes 1.000000 2 1.000000 NA 0.802260 78.000000 IGS_118 igs ndhG|ndhI ndhG-ndhI 114812 115272 0 461 SSC 0.449115 203 9 1 0 yes 1.000000 2 1.000000 NA 0.980477 77.700000 ndhI gene ndhI ndhI 115273 115758 -1 486 SSC 0.474328 194 77 0 1 yes 1.000000 2 1.000000 NA 0.841564 78.200000 IGS_119 igs ndhI|ndhA ndhI-ndhA 115759 115839 0 81 SSC 0.452055 33 8 0 2 yes 1.000000 2 1.000000 NA 0.901235 76.000000 ndhA gene ndhA ndhA 115840 118163 -1 2324 SSC 0.457550 900 357 0 2 yes 1.000000 2 1.000000 NA 0.846386 79.000000 IGS_120 igs ndhA|ndhH ndhA-ndhH 118164 118164 0 1 SSC 0.000000 0 0 1 1 no 0.000000 1 0.000000 NA 1.000000 18.800000 ndhH gene ndhH ndhH 118165 119346 -1 1182 SSC 0.461702 434 242 2 1 yes 1.000000 2 1.000000 NA 0.795262 79.300000 IGS_121 igs ndhH|rps15 ndhH-rps15 119347 119445 0 99 SSC 0.441176 15 65 2 31 no 1.000000 2 1.000000 NA 0.343434 64.400000 rps15 gene rps15 rps15 119446 119718 -1 273 SSC 0.345794 37 166 12 14 no 1.000000 2 1.000000 NA 0.391941 65.800000 IGS_122 igs rps15|ycf1 rps15-ycf1 119719 120114 0 396 SSC 0.376093 129 53 0 1 yes 1.000000 2 1.000000 NA 0.866162 77.000000 ycf1 gene ycf1 ycf1 120115 125520 -1 5406 SSC 0.394001 1747 972 0 47 yes 1.000000 2 1.000000 NA 0.820200 73.700000 IGS_123 igs ycf1|trnN-GUU ycf1-trnN-GUU 125521 125874 0 354 IRa 0.011299 4 0 300 91 no 1.000000 2 1.000000 NA 1.000000 51.900000 trnN-GUU tRNA trnN-GUU trnN-GUU 125875 125946 1 72 IRa 0.000000 0 0 13 19 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_124 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 125947 126579 0 633 IRa 0.012638 8 0 85 300 no 1.000000 2 1.000000 NA 1.000000 57.400000 trnR-ACG tRNA trnR-ACG trnR-ACG 126580 126653 -1 74 IRa 0.000000 0 0 134 300 no 0.000000 1 0.000000 NA 1.000000 28.800000 IGS_125 igs trnR-ACG|RS52_r004 trnR-ACG-RS52_r004 126654 126908 0 255 IRa 0.000000 0 0 208 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 RS52_r004 rRNA RS52_r004 RS52_r004 126909 127029 -1 121 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_126 igs RS52_r004|RS52_r003 RS52_r004-RS52_r003 127030 127250 0 221 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 RS52_r003 rRNA RS52_r003 RS52_r003 127251 127354 -1 104 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_127 igs RS52_r003|RS52_r002 RS52_r003-RS52_r002 127355 127452 0 98 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 RS52_r002 rRNA RS52_r002 RS52_r002 127453 130267 -1 2815 IRa 0.000355 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 56.200000 IGS_128 igs RS52_r002|trnA-UGC RS52_r002-trnA-UGC 130268 130426 0 159 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 130427 130461 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 131264 131301 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_131 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 131302 131365 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 131366 131400 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 132346 132387 -1 42 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_134 igs trnI-GAU|RS52_r001 trnI-GAU-RS52_r001 132388 132680 0 293 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 RS52_r001 rRNA RS52_r001 RS52_r001 132681 134171 -1 1491 IRa 0.000000 0 0 300 165 no 0.000000 1 0.000000 NA 1.000000 37.400000 IGS_135 igs RS52_r001|trnV-GAC RS52_r001-trnV-GAC 134172 134388 0 217 IRa 0.009217 2 0 300 248 no 1.000000 2 1.000000 NA 1.000000 57.800000 trnV-GAC tRNA trnV-GAC trnV-GAC 134389 134460 -1 72 IRa 0.000000 0 0 43 176 no 0.000000 1 0.000000 NA 1.000000 22.000000 IGS_136 igs trnV-GAC|rps12 trnV-GAC-rps12 134461 136290 0 1830 IRa 0.001644 3 5 115 300 no 1.000000 2 1.000000 NA 0.997268 52.900000 rps12_part2 gene rps12 rps12 136291 136533 1 243 IRa 0.000000 0 0 300 277 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_137 igs rps12|rps7 rps12-rps7 136534 137139 0 606 IRa 0.001661 1 4 300 300 no 1.000000 2 1.000000 NA 0.993399 60.300000 rps7 gene rps7 rps7 137140 137607 1 468 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 37.300000 IGS_138 igs rps7|ndhB rps7-ndhB 137608 137956 0 349 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 34.800000 ndhB gene ndhB ndhB 137957 140125 1 2169 IRa 0.000461 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 57.600000 IGS_139 igs ndhB|trnL-CAA ndhB-trnL-CAA 140126 140704 0 579 IRa 0.001727 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.300000 trnL-CAA tRNA trnL-CAA trnL-CAA 140705 140785 1 81 IRa 0.000000 0 0 183 224 no 0.000000 1 0.000000 NA 1.000000 32.500000 IGS_140 igs trnL-CAA|ycf2 trnL-CAA-ycf2 140786 141364 0 579 IRa 0.008636 5 0 264 100 no 1.000000 2 1.000000 NA 1.000000 55.800000 ycf2 gene ycf2 ycf2 141365 146599 -1 5235 IRa 0.001917 10 18 10 300 no 1.000000 2 1.000000 NA 0.996562 39.700000 IGS_141 igs ycf2|rpl23 ycf2-rpl23 146600 146885 0 286 IRa 0.000000 0 0 300 208 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 146886 147167 1 282 IRa 0.003546 1 0 300 206 no 1.000000 2 1.000000 NA 1.000000 54.500000 IGS_142 igs rpl23|trnH-GUG rpl23-trnH-GUG 147168 17 0 1622 IRa 0.003724 6 11 73 197 no 1.000000 2 1.000000 NA 0.993218 51.800000