feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 47 121 -1 75 LSC 0.026667 2 0 12 26 no 1.000000 2 1.000000 NA 1.000000 53.700000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 122 422 0 301 LSC 0.044610 12 32 47 33 no 1.000000 2 1.000000 NA 0.893688 68.300000 psbA gene psbA psbA 423 1484 -1 1062 LSC 0.004708 5 0 26 65 no 1.000000 2 1.000000 NA 1.000000 48.400000 IGS_002 igs psbA|trnK-UUU psbA-trnK-UUU 1485 1703 0 219 LSC 0.022831 5 0 116 100 no 1.000000 2 1.000000 NA 1.000000 58.100000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1704 1738 -1 35 LSC 0.000000 0 0 50 65 no 0.000000 1 0.000000 NA 1.000000 22.500000 matK gene matK matK 2027 3553 -1 1527 LSC 0.020956 32 0 56 30 no 1.000000 2 1.000000 NA 1.000000 58.000000 IGS_005 igs matK|trnK-UUU matK-trnK-UUU 3554 4317 0 764 LSC 0.020298 15 25 62 138 no 1.000000 2 1.000000 NA 0.967277 63.200000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4318 4354 -1 37 LSC 0.000000 0 0 130 101 no 0.000000 1 0.000000 NA 1.000000 26.300000 IGS_006 igs trnK-UUU|rps16 trnK-UUU-rps16 4355 5208 0 854 LSC 0.032105 27 13 167 30 no 1.000000 2 1.000000 NA 0.984778 65.900000 rps16 gene rps16 rps16 5209 6224 -1 1016 LSC 0.025227 25 25 30 43 no 1.000000 2 1.000000 NA 0.975394 62.800000 IGS_007 igs rps16|trnQ-UUG rps16-trnQ-UUG 6225 7744 0 1520 LSC 0.023031 31 174 152 36 no 1.000000 2 1.000000 NA 0.885526 62.400000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 7745 7816 -1 72 LSC 0.013889 1 0 5 38 no 1.000000 2 1.000000 NA 1.000000 45.900000 IGS_008 igs trnQ-UUG|psbK trnQ-UUG-psbK 7817 8273 0 457 LSC 0.038356 14 92 35 89 no 1.000000 2 1.000000 NA 0.798687 65.100000 psbK gene psbK psbK 8274 8459 1 186 LSC 0.010753 2 0 32 13 no 1.000000 2 1.000000 NA 1.000000 44.700000 IGS_009 igs psbK|psbI psbK-psbI 8460 8883 0 424 LSC 0.019370 8 11 62 116 no 1.000000 2 1.000000 NA 0.974057 58.300000 psbI gene psbI psbI 8884 8994 1 111 LSC 0.000000 0 0 15 5 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_010 igs psbI|trnS-GCU psbI-trnS-GCU 8995 9135 0 141 LSC 0.061538 8 11 126 84 yes 1.000000 2 1.000000 NA 0.921986 77.400000 trnS-GCU tRNA trnS-GCU trnS-GCU 9136 9223 -1 88 LSC 0.011364 1 0 43 23 no 1.000000 2 1.000000 NA 1.000000 45.800000 IGS_011 igs trnS-GCU|trnG-UCC trnS-GCU-trnG-UCC 9224 9982 0 759 LSC 0.027548 20 33 3 46 no 1.000000 2 1.000000 NA 0.956522 63.900000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 9983 10005 1 23 LSC 0.000000 0 0 2 23 no 0.000000 1 0.000000 NA 1.000000 18.900000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 10725 10772 1 48 LSC 0.000000 0 0 20 24 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_014 igs trnG-UCC|trnR-UCU trnG-UCC-trnR-UCU 10773 10963 0 191 LSC 0.081871 14 20 68 99 yes 1.000000 2 1.000000 NA 0.895288 77.600000 trnR-UCU tRNA trnR-UCU trnR-UCU 10964 11035 1 72 LSC 0.000000 0 0 70 27 no 0.000000 1 0.000000 NA 1.000000 20.800000 IGS_015 igs trnR-UCU|atpA trnR-UCU-atpA 11036 11244 0 209 LSC 0.062201 13 0 142 1 yes 1.000000 2 1.000000 NA 1.000000 67.900000 atpA gene atpA atpA 11245 12768 -1 1524 LSC 0.007218 11 0 67 83 no 1.000000 2 1.000000 NA 1.000000 52.900000 IGS_016 igs atpA|atpF atpA-atpF 12769 12828 0 60 LSC 0.000000 0 12 54 23 no 1.000000 2 1.000000 NA 0.800000 39.800000 atpF gene atpF atpF 12829 14133 -1 1305 LSC 0.010015 13 7 114 10 no 1.000000 2 1.000000 NA 0.994636 50.800000 IGS_017 igs atpF|atpH atpF-atpH 14134 14552 0 419 LSC 0.031707 13 9 8 12 no 1.000000 2 1.000000 NA 0.978520 60.800000 atpH gene atpH atpH 14553 14798 -1 246 LSC 0.020325 5 0 59 113 no 1.000000 2 1.000000 NA 1.000000 53.600000 IGS_018 igs atpH|atpI atpH-atpI 14799 15924 0 1126 LSC 0.011638 13 9 68 243 no 1.000000 2 1.000000 NA 0.992007 56.300000 atpI gene atpI atpI 15925 16668 -1 744 LSC 0.008065 6 0 151 31 no 1.000000 2 1.000000 NA 1.000000 50.700000 IGS_019 igs atpI|rps2 atpI-rps2 16669 16873 0 205 LSC 0.019512 4 0 39 179 no 1.000000 2 1.000000 NA 1.000000 51.600000 rps2 gene rps2 rps2 16874 17584 -1 711 LSC 0.005626 4 0 35 300 no 1.000000 2 1.000000 NA 1.000000 49.600000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 17585 17820 0 236 LSC 0.000000 0 0 72 119 no 0.000000 1 0.000000 NA 1.000000 24.100000 rpoC2 gene rpoC2 rpoC2 17821 21987 -1 4167 LSC 0.009839 41 0 300 171 no 1.000000 2 1.000000 NA 1.000000 57.300000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 21988 22164 0 177 LSC 0.005650 1 0 9 191 no 1.000000 2 1.000000 NA 1.000000 41.400000 rpoC1 gene rpoC1 rpoC1 22165 24984 -1 2820 LSC 0.008916 25 16 5 198 no 1.000000 2 1.000000 NA 0.994326 47.000000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 24985 25010 0 26 LSC 0.000000 0 0 50 172 no 0.000000 1 0.000000 NA 1.000000 22.500000 rpoB gene rpoB rpoB 25011 28223 -1 3213 LSC 0.007158 23 0 76 3 no 1.000000 2 1.000000 NA 1.000000 44.600000 IGS_023 igs rpoB|trnC-GCA rpoB-trnC-GCA 28224 29347 0 1124 LSC 0.027580 31 0 85 92 no 1.000000 2 1.000000 NA 1.000000 66.000000 trnC-GCA tRNA trnC-GCA trnC-GCA 29348 29418 1 71 LSC 0.000000 0 0 22 21 no 0.000000 1 0.000000 NA 1.000000 20.300000 IGS_024 igs trnC-GCA|petN trnC-GCA-petN 29419 30308 0 890 LSC 0.018301 14 125 93 119 no 1.000000 2 1.000000 NA 0.859551 63.200000 petN gene petN petN 30309 30398 1 90 LSC 0.000000 0 0 0 29 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_025 igs petN|psbM petN-psbM 30399 31642 0 1244 LSC 0.013093 16 22 90 184 no 1.000000 2 1.000000 NA 0.982315 59.700000 psbM gene psbM psbM 31643 31747 -1 105 LSC 0.000000 0 0 300 79 no 0.000000 1 0.000000 NA 1.000000 24.700000 IGS_026 igs psbM|trnD-GUC psbM-trnD-GUC 31748 32870 0 1123 LSC 0.023381 26 11 300 106 no 1.000000 2 1.000000 NA 0.990205 66.100000 trnD-GUC tRNA trnD-GUC trnD-GUC 32871 32944 -1 74 LSC 0.000000 0 0 63 32 no 0.000000 1 0.000000 NA 1.000000 21.100000 IGS_027 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 32945 33381 0 437 LSC 0.018349 8 1 137 300 no 1.000000 2 1.000000 NA 0.997712 61.400000 trnY-GUA tRNA trnY-GUA trnY-GUA 33382 33465 -1 84 LSC 0.000000 0 0 218 233 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_028 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 33466 33522 0 57 LSC 0.000000 0 0 300 176 no 0.000000 1 0.000000 NA 1.000000 31.900000 trnE-UUC tRNA trnE-UUC trnE-UUC 33523 33595 -1 73 LSC 0.000000 0 0 300 103 no 0.000000 1 0.000000 NA 1.000000 26.500000 IGS_029 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 33596 34442 0 847 LSC 0.035627 29 33 300 157 yes 1.000000 2 1.000000 NA 0.961039 79.600000 trnT-GGU tRNA trnT-GGU trnT-GGU 34443 34514 1 72 LSC 0.000000 0 0 77 85 no 0.000000 1 0.000000 NA 1.000000 24.500000 IGS_030 igs trnT-GGU|psbD trnT-GGU-psbD 34515 35441 0 927 LSC 0.012945 12 0 149 300 no 1.000000 2 1.000000 NA 1.000000 62.400000 psbD gene psbD psbD 35442 36503 1 1062 LSC 0.001883 2 0 147 60 no 1.000000 2 1.000000 NA 1.000000 49.300000 psbC gene psbC psbC 36487 37872 1 1386 LSC 0.003608 5 0 70 96 no 1.000000 2 1.000000 NA 1.000000 51.100000 IGS_032 igs psbC|trnS-UGA psbC-trnS-UGA 37873 38089 0 217 LSC 0.050691 11 0 105 99 yes 1.000000 2 1.000000 NA 1.000000 73.800000 trnS-UGA tRNA trnS-UGA trnS-UGA 38090 38182 -1 93 LSC 0.000000 0 0 15 6 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_033 igs trnS-UGA|psbZ trnS-UGA-psbZ 38183 38538 0 356 LSC 0.033898 12 2 108 285 no 1.000000 2 1.000000 NA 0.994382 66.800000 psbZ gene psbZ psbZ 38539 38727 1 189 LSC 0.000000 0 0 20 96 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_034 igs psbZ|trnG-GCC psbZ-trnG-GCC 38728 39101 0 374 LSC 0.034375 11 54 209 125 yes 1.000000 2 1.000000 NA 0.855615 69.800000 trnG-GCC tRNA trnG-GCC trnG-GCC 39102 39172 1 71 LSC 0.000000 0 0 0 54 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_035 igs trnG-GCC|trnfM-CAU trnG-GCC-trnfM-CAU 39173 39360 0 188 LSC 0.015957 3 0 71 84 no 1.000000 2 1.000000 NA 1.000000 52.000000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 39361 39434 -1 74 LSC 0.000000 0 0 21 10 no 0.000000 1 0.000000 NA 1.000000 19.500000 IGS_036 igs trnfM-CAU|rps14 trnfM-CAU-rps14 39435 39582 0 148 LSC 0.027027 4 0 95 300 no 1.000000 2 1.000000 NA 1.000000 60.200000 rps14 gene rps14 rps14 39583 39885 -1 303 LSC 0.000000 0 0 8 64 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_037 igs rps14|psaB rps14-psaB 39886 40023 0 138 LSC 0.014493 2 0 300 48 no 1.000000 2 1.000000 NA 1.000000 49.400000 psaB gene psaB psaB 40024 42228 -1 2205 LSC 0.005442 12 0 4 300 no 1.000000 2 1.000000 NA 1.000000 45.700000 IGS_038 igs psaB|psaA psaB-psaA 42229 42253 0 25 LSC 0.000000 0 0 155 300 no 0.000000 1 0.000000 NA 1.000000 30.400000 psaA gene psaA psaA 42254 44506 -1 2253 LSC 0.005770 13 0 180 47 no 1.000000 2 1.000000 NA 1.000000 49.000000 IGS_039 igs psaA|ycf3 psaA-ycf3 44507 45463 0 957 LSC 0.058754 50 106 29 220 yes 1.000000 2 1.000000 NA 0.889237 78.100000 ycf3 gene ycf3 ycf3 45464 47482 -1 2019 LSC 0.002985 6 9 23 126 no 1.000000 2 1.000000 NA 0.995542 46.500000 IGS_040 igs ycf3|trnS-GGA ycf3-trnS-GGA 47483 48627 0 1145 LSC 0.023184 15 498 300 189 yes 1.000000 2 1.000000 NA 0.565066 64.600000 trnS-GGA tRNA trnS-GGA trnS-GGA 48628 48714 1 87 LSC 0.000000 0 0 24 102 no 0.000000 1 0.000000 NA 1.000000 20.600000 IGS_041 igs trnS-GGA|rps4 trnS-GGA-rps4 48715 48878 0 164 LSC 0.042683 7 0 111 141 yes 1.000000 2 1.000000 NA 1.000000 70.400000 rps4 gene rps4 rps4 48879 49484 -1 606 LSC 0.004950 3 0 1 143 no 1.000000 2 1.000000 NA 1.000000 46.700000 IGS_042 igs rps4|trnT-UGU rps4-trnT-UGU 49485 49838 0 354 LSC 0.019886 7 2 224 165 no 1.000000 2 1.000000 NA 0.994350 63.000000 trnT-UGU tRNA trnT-UGU trnT-UGU 49839 49911 -1 73 LSC 0.000000 0 0 34 92 no 0.000000 1 0.000000 NA 1.000000 21.300000 IGS_043 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 49912 50831 0 920 LSC 0.014623 13 31 107 228 no 1.000000 2 1.000000 NA 0.966304 63.400000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 50832 50866 1 35 LSC 0.000000 0 0 79 193 no 0.000000 1 0.000000 NA 1.000000 24.700000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 51411 51460 1 50 LSC 0.000000 0 0 41 29 no 0.000000 1 0.000000 NA 1.000000 20.900000 IGS_046 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 51461 51848 0 388 LSC 0.020942 8 6 91 296 no 1.000000 2 1.000000 NA 0.984536 59.700000 trnF-GAA tRNA trnF-GAA trnF-GAA 51849 51921 1 73 LSC 0.000000 0 0 172 223 no 0.000000 1 0.000000 NA 1.000000 31.600000 IGS_047 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 51922 52817 0 896 LSC 0.021557 18 61 245 60 no 1.000000 2 1.000000 NA 0.931920 64.800000 ndhJ gene ndhJ ndhJ 52818 53234 -1 417 LSC 0.014493 6 3 17 150 no 1.000000 2 1.000000 NA 0.992806 50.200000 ndhK gene ndhK ndhK 53047 53540 -1 494 LSC 0.012220 6 3 62 27 no 1.000000 2 1.000000 NA 0.993927 51.200000 IGS_049 igs ndhK|ndhC ndhK-ndhC 53541 54047 0 507 LSC 0.031250 15 27 34 38 no 1.000000 2 1.000000 NA 0.946746 66.900000 ndhC gene ndhC ndhC 54048 54428 -1 381 LSC 0.029255 11 5 9 193 no 1.000000 2 1.000000 NA 0.986877 57.900000 IGS_050 igs ndhC|trnV-UAC ndhC-trnV-UAC 54429 55429 0 1001 LSC 0.030655 29 55 5 217 no 1.000000 2 1.000000 NA 0.945055 66.200000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 55430 55464 -1 35 LSC 0.000000 0 0 13 182 no 0.000000 1 0.000000 NA 1.000000 19.700000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 56076 56114 -1 39 LSC 0.000000 0 0 22 17 no 0.000000 1 0.000000 NA 1.000000 20.000000 IGS_053 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 56115 56287 0 173 LSC 0.023121 4 0 61 300 no 1.000000 2 1.000000 NA 1.000000 55.400000 trnM-CAU tRNA trnM-CAU trnM-CAU 56288 56360 1 73 LSC 0.000000 0 0 18 300 no 0.000000 1 0.000000 NA 1.000000 20.100000 IGS_054 igs trnM-CAU|atpE trnM-CAU-atpE 56361 56557 0 197 LSC 0.000000 0 8 91 300 no 1.000000 2 1.000000 NA 0.959391 48.300000 atpE gene atpE atpE 56558 56959 -1 402 LSC 0.000000 0 0 288 18 no 0.000000 1 0.000000 NA 1.000000 22.200000 atpB gene atpB atpB 56956 58452 -1 1497 LSC 0.005344 8 0 300 16 no 1.000000 2 1.000000 NA 1.000000 48.000000 IGS_056 igs atpB|rbcL atpB-rbcL 58453 59236 0 784 LSC 0.018158 14 13 92 110 no 1.000000 2 1.000000 NA 0.983418 62.700000 rbcL gene rbcL rbcL 59237 60664 1 1428 LSC 0.009804 14 0 33 254 no 1.000000 2 1.000000 NA 1.000000 51.900000 IGS_057 igs rbcL|accD rbcL-accD 60665 61330 0 666 LSC 0.019847 13 11 14 3 no 1.000000 2 1.000000 NA 0.983483 56.900000 accD gene accD accD 61331 62824 1 1494 LSC 0.014056 21 0 22 65 no 1.000000 2 1.000000 NA 1.000000 53.500000 IGS_058 igs accD|psaI accD-psaI 62825 63648 0 824 LSC 0.020645 16 49 17 23 no 1.000000 2 1.000000 NA 0.940534 61.300000 psaI gene psaI psaI 63649 63759 1 111 LSC 0.018018 2 0 20 38 no 1.000000 2 1.000000 NA 1.000000 49.400000 IGS_059 igs psaI|ycf4 psaI-ycf4 63760 64154 0 395 LSC 0.027848 11 0 52 230 no 1.000000 2 1.000000 NA 1.000000 59.400000 ycf4 gene ycf4 ycf4 64155 64709 1 555 LSC 0.009009 5 0 22 89 no 1.000000 2 1.000000 NA 1.000000 49.600000 IGS_060 igs ycf4|cemA ycf4-cemA 64710 65642 0 933 LSC 0.019459 18 8 186 134 no 1.000000 2 1.000000 NA 0.991426 65.800000 cemA gene cemA cemA 65643 66341 1 699 LSC 0.008584 6 0 262 70 no 1.000000 2 1.000000 NA 1.000000 53.900000 IGS_061 igs cemA|petA cemA-petA 66342 66564 0 223 LSC 0.009132 2 4 36 96 no 1.000000 2 1.000000 NA 0.982063 47.200000 petA gene petA petA 66565 67536 1 972 LSC 0.009346 9 9 127 125 no 1.000000 2 1.000000 NA 0.990741 59.400000 IGS_062 igs petA|psbJ petA-psbJ 67537 68477 0 941 LSC 0.024946 23 19 135 181 yes 1.000000 2 1.000000 NA 0.979809 70.100000 psbJ gene psbJ psbJ 68478 68600 -1 123 LSC 0.000000 0 0 2 58 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_063 igs psbJ|psbL psbJ-psbL 68601 68795 0 195 LSC 0.029070 5 23 125 18 no 1.000000 2 1.000000 NA 0.882051 58.100000 psbL gene psbL psbL 68796 68912 -1 117 LSC 0.008547 1 0 21 289 no 1.000000 2 1.000000 NA 1.000000 44.000000 IGS_064 igs psbL|psbF psbL-psbF 68913 68934 0 22 LSC 0.000000 0 0 98 267 no 0.000000 1 0.000000 NA 1.000000 26.100000 psbF gene psbF psbF 68935 69054 -1 120 LSC 0.000000 0 0 120 147 no 0.000000 1 0.000000 NA 1.000000 27.700000 IGS_065 igs psbF|psbE psbF-psbE 69055 69063 0 9 LSC 0.000000 0 0 240 138 no 0.000000 1 0.000000 NA 1.000000 29.100000 psbE gene psbE psbE 69064 69315 -1 252 LSC 0.003968 1 0 249 31 no 1.000000 2 1.000000 NA 1.000000 42.100000 IGS_066 igs psbE|petL psbE-petL 69316 70626 0 1311 LSC 0.021944 28 35 113 300 no 1.000000 2 1.000000 NA 0.973303 67.400000 petL gene petL petL 70627 70722 1 96 LSC 0.000000 0 0 18 230 no 0.000000 1 0.000000 NA 1.000000 20.100000 IGS_067 igs petL|petG petL-petG 70723 70908 0 186 LSC 0.000000 0 8 114 44 no 1.000000 2 1.000000 NA 0.956989 45.000000 petG gene petG petG 70909 71022 1 114 LSC 0.008772 1 0 300 284 no 1.000000 2 1.000000 NA 1.000000 57.500000 IGS_068 igs petG|trnW-CCA petG-trnW-CCA 71023 71155 0 133 LSC 0.000000 0 5 69 151 no 1.000000 2 1.000000 NA 0.962406 46.300000 trnW-CCA tRNA trnW-CCA trnW-CCA 71156 71229 -1 74 LSC 0.000000 0 0 202 77 no 0.000000 1 0.000000 NA 1.000000 24.500000 IGS_069 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 71230 71403 0 174 LSC 0.011494 2 0 276 89 no 1.000000 2 1.000000 NA 1.000000 50.800000 trnP-UGG tRNA trnP-UGG trnP-UGG 71404 71477 -1 74 LSC 0.000000 0 0 22 15 no 0.000000 1 0.000000 NA 1.000000 19.900000 IGS_070 igs trnP-UGG|psaJ trnP-UGG-psaJ 71478 71768 0 291 LSC 0.022059 6 19 96 45 no 1.000000 2 1.000000 NA 0.934708 57.800000 psaJ gene psaJ psaJ 71769 71903 1 135 LSC 0.022222 3 0 16 42 no 1.000000 2 1.000000 NA 1.000000 51.500000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 71904 72391 0 488 LSC 0.025751 12 22 33 60 no 1.000000 2 1.000000 NA 0.954918 62.900000 rpl33 gene rpl33 rpl33 72392 72598 1 207 LSC 0.009662 2 0 26 2 no 1.000000 2 1.000000 NA 1.000000 43.200000 IGS_072 igs rpl33|rps18 rpl33-rps18 72599 73003 0 405 LSC 0.037288 11 110 145 53 no 1.000000 2 1.000000 NA 0.728395 62.400000 rps18 gene rps18 rps18 73004 73309 1 306 LSC 0.003268 1 0 39 37 no 1.000000 2 1.000000 NA 1.000000 42.300000 IGS_073 igs rps18|rpl20 rps18-rpl20 73310 73612 0 303 LSC 0.033223 10 2 252 91 no 1.000000 2 1.000000 NA 0.993399 64.100000 rpl20 gene rpl20 rpl20 73613 73963 -1 351 LSC 0.005698 2 0 38 63 no 1.000000 2 1.000000 NA 1.000000 44.700000 IGS_074 igs rpl20|rps12 rpl20-rps12 73964 74793 0 830 LSC 0.016970 14 5 257 198 no 1.000000 2 1.000000 NA 0.993976 68.900000 rps12_part1 gene rps12 rps12 74794 74907 -1 114 LSC 0.000000 0 0 109 84 no 0.000000 1 0.000000 NA 1.000000 25.100000 IGS_075 igs rps12|clpP1 rps12-clpP1 74908 75052 0 145 LSC 0.006897 1 0 223 199 no 1.000000 2 1.000000 NA 1.000000 56.400000 clpP1 gene clpP1 clpP1 75053 77118 -1 2066 LSC 0.011770 24 27 60 56 no 1.000000 2 1.000000 NA 0.986931 54.800000 IGS_076 igs clpP1|psbB clpP1-psbB 77119 77593 0 475 LSC 0.023965 11 16 109 300 no 1.000000 2 1.000000 NA 0.966316 66.300000 psbB gene psbB psbB 77594 79120 1 1527 LSC 0.003929 6 0 14 10 no 1.000000 2 1.000000 NA 1.000000 46.700000 IGS_077 igs psbB|psbT psbB-psbT 79121 79298 0 178 LSC 0.016854 3 0 35 101 no 1.000000 2 1.000000 NA 1.000000 49.800000 psbT gene psbT psbT 79299 79406 1 108 LSC 0.009259 1 0 9 71 no 1.000000 2 1.000000 NA 1.000000 43.500000 IGS_078 igs psbT|pbf1 psbT-pbf1 79407 79471 0 65 LSC 0.000000 0 0 6 6 no 0.000000 1 0.000000 NA 1.000000 19.200000 pbf1 gene pbf1 pbf1 79472 79603 -1 132 LSC 0.007576 1 0 71 4 no 1.000000 2 1.000000 NA 1.000000 42.200000 IGS_079 igs pbf1|psbH pbf1-psbH 79604 79721 0 118 LSC 0.016949 2 0 125 144 no 1.000000 2 1.000000 NA 1.000000 56.600000 psbH gene psbH psbH 79722 79943 1 222 LSC 0.009009 2 0 94 64 no 1.000000 2 1.000000 NA 1.000000 47.500000 IGS_080 igs psbH|petB psbH-petB 79944 80068 0 125 LSC 0.008000 1 0 69 50 no 1.000000 2 1.000000 NA 1.000000 45.900000 petB gene petB petB 80069 81482 1 1414 LSC 0.006406 9 9 60 39 no 1.000000 2 1.000000 NA 0.993635 51.000000 IGS_081 igs petB|petD petB-petD 81483 81693 0 211 LSC 0.014925 3 10 300 103 no 1.000000 2 1.000000 NA 0.952607 58.300000 petD gene petD petD 81694 82942 1 1249 LSC 0.005632 7 6 19 31 no 1.000000 2 1.000000 NA 0.995196 48.900000 IGS_082 igs petD|rpoA petD-rpoA 82943 83104 0 162 LSC 0.024845 4 1 300 7 no 1.000000 2 1.000000 NA 0.993827 52.900000 rpoA gene rpoA rpoA 83105 84124 -1 1020 LSC 0.012745 13 0 2 8 no 1.000000 2 1.000000 NA 1.000000 51.200000 IGS_083 igs rpoA|rps11 rpoA-rps11 84125 84183 0 59 LSC 0.033898 2 0 50 21 no 1.000000 2 1.000000 NA 1.000000 58.600000 rps11 gene rps11 rps11 84184 84600 -1 417 LSC 0.014388 6 0 37 58 no 1.000000 2 1.000000 NA 1.000000 51.000000 IGS_084 igs rps11|rpl36 rps11-rpl36 84601 84713 0 113 LSC 0.035398 4 0 35 81 no 1.000000 2 1.000000 NA 1.000000 60.500000 rpl36 gene rpl36 rpl36 84714 84827 -1 114 LSC 0.017544 2 0 13 35 no 1.000000 2 1.000000 NA 1.000000 48.600000 IGS_085 igs rpl36|infA rpl36-infA 84828 84948 0 121 LSC 0.024793 3 0 17 46 no 1.000000 2 1.000000 NA 1.000000 53.000000 infA gene infA infA 84949 85182 -1 234 LSC 0.012821 3 0 2 2 no 1.000000 2 1.000000 NA 1.000000 45.000000 IGS_086 igs infA|rps8 infA-rps8 85183 85300 0 118 LSC 0.016949 2 0 63 96 no 1.000000 2 1.000000 NA 1.000000 52.000000 rps8 gene rps8 rps8 85301 85708 -1 408 LSC 0.004902 2 0 73 32 no 1.000000 2 1.000000 NA 1.000000 45.000000 IGS_087 igs rps8|rpl14 rps8-rpl14 85709 85915 0 207 LSC 0.020725 4 14 69 60 no 1.000000 2 1.000000 NA 0.932367 58.100000 rpl14 gene rpl14 rpl14 85916 86284 -1 369 LSC 0.002710 1 0 98 28 no 1.000000 2 1.000000 NA 1.000000 42.600000 IGS_088 igs rpl14|rpl16 rpl14-rpl16 86285 86410 0 126 LSC 0.023810 3 0 300 102 no 1.000000 2 1.000000 NA 1.000000 58.800000 rpl16 gene rpl16 rpl16 86411 87865 -1 1455 LSC 0.018638 26 60 19 133 no 1.000000 2 1.000000 NA 0.958763 59.800000 IGS_089 igs rpl16|rps3 rpl16-rps3 87866 88064 0 199 LSC 0.027624 5 18 40 41 no 1.000000 2 1.000000 NA 0.909548 59.800000 rps3 gene rps3 rps3 88065 88721 -1 657 LSC 0.015221 10 0 34 21 no 1.000000 2 1.000000 NA 1.000000 54.100000 IGS_090 igs rps3|rpl22 rps3-rpl22 88722 88818 0 97 LSC 0.020619 2 0 29 141 no 1.000000 2 1.000000 NA 1.000000 51.500000 rpl22 gene rpl22 rpl22 88819 89181 -1 363 LSC 0.005510 2 0 32 46 no 1.000000 2 1.000000 NA 1.000000 44.400000 IGS_091 igs rpl22|rps19 rpl22-rps19 89182 89254 0 73 LSC 0.018868 1 20 165 29 no 1.000000 2 1.000000 NA 0.726027 48.400000 rps19 gene rps19 rps19 89255 89533 -1 279 LSC 0.014337 4 0 26 7 no 1.000000 2 1.000000 NA 1.000000 46.300000 IGS_092 igs rps19|rpl2 rps19-rpl2 89534 89594 0 61 IRb 0.032787 2 0 23 300 no 1.000000 2 1.000000 NA 1.000000 58.100000 rpl2 gene rpl2 rpl2 89595 91087 -1 1493 IRb 0.000670 1 0 0 106 no 1.000000 2 1.000000 NA 1.000000 44.100000 IGS_093 igs rpl2|rpl23 rpl2-rpl23 91088 91105 0 18 IRb 0.000000 0 0 126 88 no 0.000000 1 0.000000 NA 1.000000 25.400000 rpl23 gene rpl23 rpl23 91106 91390 -1 285 IRb 0.003509 1 0 144 300 no 1.000000 2 1.000000 NA 1.000000 50.300000 IGS_094 igs rpl23|trnI-CAU rpl23-trnI-CAU 91391 91546 0 156 IRb 0.000000 0 0 196 300 no 0.000000 1 0.000000 NA 1.000000 33.500000 trnI-CAU tRNA trnI-CAU trnI-CAU 91547 91620 -1 74 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_095 igs trnI-CAU|ycf2 trnI-CAU-ycf2 91621 91708 0 88 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 ycf2 gene ycf2 ycf2 91709 98527 1 6819 IRb 0.001908 13 6 300 300 no 1.000000 2 1.000000 NA 0.999120 53.700000 IGS_096 igs ycf2|trnL-CAA ycf2-trnL-CAA 98528 99445 0 918 IRb 0.001089 1 0 79 300 no 1.000000 2 1.000000 NA 1.000000 50.300000 trnL-CAA tRNA trnL-CAA trnL-CAA 99446 99526 -1 81 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_097 igs trnL-CAA|ndhB trnL-CAA-ndhB 99527 100086 0 560 IRb 0.000000 0 4 300 300 no 1.000000 2 1.000000 NA 0.992857 58.600000 ndhB gene ndhB ndhB 100087 102309 -1 2223 IRb 0.000900 2 0 300 86 no 1.000000 2 1.000000 NA 1.000000 49.200000 IGS_098 igs ndhB|rps7 ndhB-rps7 102310 102597 0 288 IRb 0.003472 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 54.500000 rps7 gene rps7 rps7 102598 103065 -1 468 IRb 0.000000 0 0 201 3 no 0.000000 1 0.000000 NA 1.000000 22.500000 IGS_099 igs rps7|rps12 rps7-rps12 103066 103117 0 52 IRb 0.019231 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 63.600000 rps12_part2 gene rps12 rps12 103118 103916 -1 799 IRb 0.000000 0 0 48 128 no 0.000000 1 0.000000 NA 1.000000 28.600000 IGS_100 igs rps12|trnV-GAC rps12-trnV-GAC 103917 105789 0 1873 IRb 0.003203 6 0 300 110 no 1.000000 2 1.000000 NA 1.000000 53.100000 trnV-GAC tRNA trnV-GAC trnV-GAC 105790 105861 1 72 IRb 0.000000 0 0 6 38 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_101 igs trnV-GAC|rrn16 trnV-GAC-rrn16 105862 106088 0 227 IRb 0.004405 1 0 78 300 no 1.000000 2 1.000000 NA 1.000000 45.900000 rrn16 rRNA rrn16 rrn16 106089 107579 1 1491 IRb 0.000671 1 0 188 300 no 1.000000 2 1.000000 NA 1.000000 58.200000 IGS_102 igs rrn16|trnI-GAU rrn16-trnI-GAU 107580 107879 0 300 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 107880 107916 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 108864 108898 1 35 IRb 0.000000 0 0 300 97 no 0.000000 1 0.000000 NA 1.000000 26.000000 IGS_105 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 108899 108967 0 69 IRb 0.000000 0 0 300 28 no 0.000000 1 0.000000 NA 1.000000 20.900000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 108968 109005 1 38 IRb 0.026316 1 0 300 262 no 1.000000 2 1.000000 NA 1.000000 67.600000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 109831 109865 1 35 IRb 0.000000 0 0 168 300 no 0.000000 1 0.000000 NA 1.000000 31.400000 IGS_108 igs trnA-UGC|rrn23 trnA-UGC-rrn23 109866 110028 0 163 IRb 0.000000 0 0 203 195 no 0.000000 1 0.000000 NA 1.000000 33.400000 rrn23 rRNA rrn23 rrn23 110029 112838 1 2810 IRb 0.000712 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 56.400000 IGS_109 igs rrn23|rrn4.5 rrn23-rrn4.5 112839 112936 0 98 IRb 0.000000 0 0 300 204 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn4.5 rRNA rrn4.5 rrn4.5 112937 113039 1 103 IRb 0.000000 0 0 300 101 no 0.000000 1 0.000000 NA 1.000000 26.300000 IGS_110 igs rrn4.5|rrn5 rrn4.5-rrn5 113040 113245 0 206 IRb 0.024272 5 0 300 112 no 1.000000 2 1.000000 NA 1.000000 59.900000 rrn5 rRNA rrn5 rrn5 113246 113366 1 121 IRb 0.008264 1 0 40 130 no 1.000000 2 1.000000 NA 1.000000 45.300000 IGS_111 igs rrn5|rpl32 rrn5-rpl32 113367 113634 0 268 IRb 0.045455 11 26 8 47 no 1.000000 2 1.000000 NA 0.902985 67.200000 rpl32 gene rpl32 rpl32 113635 113802 1 168 SSC 0.049080 8 5 1 5 no 1.000000 2 1.000000 NA 0.970238 68.500000 IGS_112 igs rpl32|trnL-UAG rpl32-trnL-UAG 113803 114589 0 787 SSC 0.097101 67 97 14 82 yes 1.000000 2 1.000000 NA 0.876747 80.700000 trnL-UAG tRNA trnL-UAG trnL-UAG 114590 114669 1 80 SSC 0.000000 0 0 100 2 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_113 igs trnL-UAG|ccsA trnL-UAG-ccsA 114670 114785 0 116 SSC 0.056075 6 9 180 11 yes 1.000000 2 1.000000 NA 0.922414 71.400000 ccsA gene ccsA ccsA 114786 115757 1 972 SSC 0.027778 27 0 7 1 no 1.000000 2 1.000000 NA 1.000000 59.800000 IGS_114 igs ccsA|ndhD ccsA-ndhD 115758 115758 0 1 SSC 0.000000 0 0 69 0 no 0.000000 1 0.000000 NA 1.000000 18.800000 ndhD gene ndhD ndhD 115759 116311 -1 553 SSC 0.036697 20 8 70 38 no 1.000000 2 1.000000 NA 0.985533 68.100000 IGS_115 igs ndhD|psaC ndhD-psaC 116312 116514 0 203 SSC 0.054348 10 19 0 21 yes 1.000000 2 1.000000 NA 0.906404 69.800000 psaC gene psaC psaC 116515 116760 -1 246 SSC 0.008130 2 0 68 2 no 1.000000 2 1.000000 NA 1.000000 42.300000 IGS_116 igs psaC|ndhI psaC-ndhI 116761 117295 0 535 SSC 0.051527 27 11 179 38 yes 1.000000 2 1.000000 NA 0.979439 76.000000 ndhI gene ndhI ndhI 117296 117434 -1 139 SSC 0.043165 6 0 0 26 no 1.000000 2 1.000000 NA 1.000000 62.300000 ndhA gene ndhA ndhA 117434 117835 -1 402 SSC 0.039370 15 21 7 16 no 1.000000 2 1.000000 NA 0.947761 67.300000 IGS_118 igs ndhA|ndhH ndhA-ndhH 117836 118054 0 219 SSC 0.050228 11 0 86 24 no 1.000000 2 1.000000 NA 1.000000 68.100000 ndhH gene ndhH ndhH 118055 118670 -1 616 SSC 0.057947 35 12 2 4 yes 1.000000 2 1.000000 NA 0.980519 75.400000 IGS_119 igs ndhH|rps15 ndhH-rps15 118671 118788 0 118 SSC 0.042373 5 0 24 79 no 1.000000 2 1.000000 NA 1.000000 63.700000 rps15 gene rps15 rps15 118789 119061 -1 273 SSC 0.021978 6 0 5 11 no 1.000000 2 1.000000 NA 1.000000 50.500000 IGS_120 igs rps15|ycf1 rps15-ycf1 119062 119494 0 433 SSC 0.045714 16 83 35 67 no 1.000000 2 1.000000 NA 0.808314 68.900000 ycf1 gene ycf1 ycf1 119495 125056 -1 5562 SSC 0.026667 148 12 34 14 no 1.000000 2 1.000000 NA 0.997843 54.100000 IGS_121 igs ycf1|trnN-GUU ycf1-trnN-GUU 125057 125356 0 300 SSC 0.062069 18 10 8 57 yes 1.000000 2 1.000000 NA 0.966667 71.300000 trnN-GUU tRNA trnN-GUU trnN-GUU 125357 125428 1 72 SSC 0.013889 1 0 7 15 no 1.000000 2 1.000000 NA 1.000000 46.000000 IGS_122 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 125429 125740 0 312 SSC 0.073718 23 0 14 9 yes 1.000000 2 1.000000 NA 1.000000 70.100000 trnR-ACG tRNA trnR-ACG trnR-ACG 125741 125814 -1 74 SSC 0.013514 1 0 9 45 no 1.000000 2 1.000000 NA 1.000000 45.900000 IGS_123 igs trnR-ACG|rrn5 trnR-ACG-rrn5 125815 126099 0 285 IRa 0.122271 28 56 64 8 yes 1.000000 2 1.000000 NA 0.803509 73.600000 rrn5 rRNA rrn5 rrn5 126100 126220 -1 121 IRa 0.008264 1 0 130 40 no 1.000000 2 1.000000 NA 1.000000 45.300000 IGS_124 igs rrn5|rrn4.5 rrn5-rrn4.5 126221 126426 0 206 IRa 0.024272 5 0 112 300 no 1.000000 2 1.000000 NA 1.000000 59.900000 rrn4.5 rRNA rrn4.5 rrn4.5 126427 126529 -1 103 IRa 0.000000 0 0 97 300 no 0.000000 1 0.000000 NA 1.000000 26.000000 IGS_125 igs rrn4.5|rrn23 rrn4.5-rrn23 126530 126627 0 98 IRa 0.000000 0 0 200 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn23 rRNA rrn23 rrn23 126628 129437 -1 2810 IRa 0.000712 2 0 298 300 no 1.000000 2 1.000000 NA 1.000000 56.400000 IGS_126 igs rrn23|trnA-UGC rrn23-trnA-UGC 129438 129600 0 163 IRa 0.000000 0 0 195 203 no 0.000000 1 0.000000 NA 1.000000 33.400000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 129601 129635 -1 35 IRa 0.000000 0 0 300 168 no 0.000000 1 0.000000 NA 1.000000 31.400000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 130461 130498 -1 38 IRa 0.026316 1 0 262 300 no 1.000000 2 1.000000 NA 1.000000 67.600000 IGS_129 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 130499 130567 0 69 IRa 0.000000 0 0 28 300 no 0.000000 1 0.000000 NA 1.000000 20.900000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 130568 130602 -1 35 IRa 0.000000 0 0 97 300 no 0.000000 1 0.000000 NA 1.000000 26.000000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 131550 131586 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_132 igs trnI-GAU|rrn16 trnI-GAU-rrn16 131587 131886 0 300 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn16 rRNA rrn16 rrn16 131887 133377 -1 1491 IRa 0.000671 1 0 300 188 no 1.000000 2 1.000000 NA 1.000000 58.200000 IGS_133 igs rrn16|trnV-GAC rrn16-trnV-GAC 133378 133604 0 227 IRa 0.004405 1 0 300 78 no 1.000000 2 1.000000 NA 1.000000 45.900000 trnV-GAC tRNA trnV-GAC trnV-GAC 133605 133676 -1 72 IRa 0.000000 0 0 38 6 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_134 igs trnV-GAC|rps12 trnV-GAC-rps12 133677 135549 0 1873 IRa 0.003203 6 0 110 300 no 1.000000 2 1.000000 NA 1.000000 53.100000 rps12_part2 gene rps12 rps12 135550 136348 1 799 IRa 0.000000 0 0 128 48 no 0.000000 1 0.000000 NA 1.000000 28.600000 IGS_135 igs rps12|rps7 rps12-rps7 136349 136400 0 52 IRa 0.019231 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 63.600000 rps7 gene rps7 rps7 136401 136868 1 468 IRa 0.000000 0 0 3 201 no 0.000000 1 0.000000 NA 1.000000 22.500000 IGS_136 igs rps7|ndhB rps7-ndhB 136869 137193 0 325 IRa 0.003077 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 54.800000 ndhB gene ndhB ndhB 137194 139379 1 2186 IRa 0.000915 2 0 123 300 no 1.000000 2 1.000000 NA 1.000000 52.100000 IGS_137 igs ndhB|trnL-CAA ndhB-trnL-CAA 139380 139939 0 560 IRa 0.000000 0 4 300 300 no 1.000000 2 1.000000 NA 0.992857 58.600000 trnL-CAA tRNA trnL-CAA trnL-CAA 139940 140020 1 81 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_138 igs trnL-CAA|ycf2 trnL-CAA-ycf2 140021 140938 0 918 IRa 0.001089 1 0 300 79 no 1.000000 2 1.000000 NA 1.000000 50.300000 ycf2 gene ycf2 ycf2 140939 147757 -1 6819 IRa 0.001908 13 6 300 300 no 1.000000 2 1.000000 NA 0.999120 53.700000 IGS_139 igs ycf2|trnI-CAU ycf2-trnI-CAU 147758 147845 0 88 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-CAU tRNA trnI-CAU trnI-CAU 147846 147919 1 74 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_140 igs trnI-CAU|rpl23 trnI-CAU-rpl23 147920 148075 0 156 IRa 0.000000 0 0 300 196 no 0.000000 1 0.000000 NA 1.000000 33.500000 rpl23 gene rpl23 rpl23 148076 148360 1 285 IRa 0.003509 1 0 300 144 no 1.000000 2 1.000000 NA 1.000000 50.300000 IGS_141 igs rpl23|rpl2 rpl23-rpl2 148361 148378 0 18 IRa 0.000000 0 0 88 126 no 0.000000 1 0.000000 NA 1.000000 25.400000 rpl2 gene rpl2 rpl2 148379 149871 1 1493 IRa 0.000670 1 0 106 0 no 1.000000 2 1.000000 NA 1.000000 44.100000 IGS_142 igs rpl2|trnH-GUG rpl2-trnH-GUG 149872 46 0 99 IRa 0.058824 4 31 300 25 no 1.000000 2 1.000000 NA 0.686869 64.400000