feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score ndhB_part1 gene ndhB ndhB 440 1165 -1 726 LSC 0.172865 249 0 1 0 no 1.000000 5 1.000000 0.172865 0.997245 78.700000 IGS_001 igs ndhB|matK ndhB-matK 1166 1378 0 213 LSC 0.289202 109 23 10 1 no 1.000000 5 1.000000 0.279648 0.985915 77.800000 matK gene matK matK 1379 2818 -1 1440 LSC 0.188518 526 9 0 0 no 1.000000 5 1.000000 0.188281 0.995833 79.400000 IGS_002 igs matK|rps16 matK-rps16 2819 3620 0 802 LSC 0.248836 376 55 1 0 yes 1.000000 5 1.000000 0.253585 0.981297 84.000000 rps16 gene rps16 rps16 3621 4283 -1 663 LSC 0.238462 298 224 2 1 yes 1.000000 5 1.000000 0.233260 0.996983 82.800000 IGS_003 igs rps16|chlB rps16-chlB 4284 4440 0 157 LSC 0.255839 76 17 1 3 no 1.000000 5 1.000000 0.250714 0.993631 77.900000 chlB gene chlB chlB 4441 6070 -1 1630 LSC 0.083640 275 15 1 1 no 1.000000 5 1.000000 0.083009 0.994479 79.500000 IGS_004 igs chlB|trnG chlB-trnG 6071 6163 0 93 LSC 0.231900 41 5 8 27 no 1.000000 5 1.000000 0.228458 1.000000 78.700000 IGS_005 igs trnG|psbK trnG-psbK 6236 6599 0 364 LSC 0.230805 158 31 44 6 no 1.000000 5 1.000000 0.226574 0.972527 79.000000 psbK gene psbK psbK 6600 6776 1 177 LSC 0.107345 39 0 5 0 no 1.000000 5 1.000000 0.107345 1.000000 72.500000 IGS_006 igs psbK|psbI psbK-psbI 6777 7013 0 237 LSC 0.273136 117 7 18 11 no 1.000000 5 1.000000 0.270601 1.000000 76.800000 psbI gene psbI psbI 7014 7124 1 111 LSC 0.075676 17 0 0 0 no 1.000000 5 1.000000 0.075676 1.000000 72.500000 IGS_007 igs psbI|trnS psbI-trnS 7125 7202 0 78 LSC 0.266667 41 0 7 0 no 1.000000 5 1.000000 0.266667 1.000000 72.500000 trnS tRNA trnS trnS 7203 7290 -1 88 LSC 0.027273 5 0 0 0 no 1.000000 5 1.000000 0.027273 1.000000 56.900000 IGS_008 igs trnS|ycf12 trnS-ycf12 7291 8065 0 775 LSC 0.210973 205 634 15 6 no 1.000000 5 1.000000 0.272326 0.339355 70.900000 ycf12 gene ycf12 ycf12 8066 8167 1 102 LSC 0.107843 21 0 0 7 no 1.000000 5 1.000000 0.107843 1.000000 72.500000 IGS_009 igs ycf12|trnG ycf12-trnG 8168 8360 0 193 LSC 0.243005 84 38 3 29 no 1.000000 5 1.000000 0.258215 0.875648 74.400000 trnG_part1 tRNA trnG trnG 8361 8383 1 23 LSC 0.000000 0 0 0 6 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 trnG_part2 tRNA trnG trnG 9321 9368 1 48 LSC 0.014583 1 0 12 1 no 0.400000 3 0.666667 0.014583 1.000000 35.500000 IGS_012 igs trnG|trnR trnG-trnR 9369 9577 0 209 LSC 0.350654 126 64 45 14 no 1.000000 5 1.000000 0.348855 0.952153 75.900000 trnR tRNA trnR trnR 9578 9649 1 72 LSC 0.030556 5 0 2 3 no 0.600000 4 0.750000 0.030556 1.000000 52.600000 IGS_013 igs trnR|atpA trnR-atpA 9650 9743 0 94 LSC 0.316288 50 20 27 1 no 1.000000 5 1.000000 0.310212 0.925532 74.800000 atpA gene atpA atpA 9744 11267 -1 1524 LSC 0.071194 223 0 0 7 no 1.000000 5 1.000000 0.071194 1.000000 78.700000 IGS_014 igs atpA|atpF atpA-atpF 11268 11348 0 81 LSC 0.140741 23 0 14 3 no 1.000000 5 1.000000 0.140741 1.000000 72.700000 atpF gene atpF atpF 11349 12613 -1 1265 LSC 0.121389 304 44 1 4 no 1.000000 5 1.000000 0.120084 0.990514 82.700000 IGS_015 igs atpF|atpH atpF-atpH 12614 12946 0 333 LSC 0.250716 147 89 3 7 no 1.000000 5 1.000000 0.245246 0.966967 76.200000 atpH gene atpH atpH 12947 13192 -1 246 LSC 0.050813 27 0 2 20 no 1.000000 5 1.000000 0.050813 1.000000 72.600000 IGS_016 igs atpH|atpI atpH-atpI 13193 14001 0 809 LSC 0.246388 362 167 1 0 yes 1.000000 5 1.000000 0.240442 0.970334 82.700000 atpI gene atpI atpI 14002 14748 -1 747 LSC 0.063722 98 0 3 0 no 1.000000 5 1.000000 0.063722 1.000000 78.800000 IGS_017 igs atpI|rps2 atpI-rps2 14749 14954 0 206 LSC 0.203167 76 37 6 1 no 1.000000 5 1.000000 0.204215 0.966019 76.300000 rps2 gene rps2 rps2 14955 15662 -1 708 LSC 0.074294 112 0 0 3 no 1.000000 5 1.000000 0.074294 1.000000 78.800000 IGS_018 igs rps2|rpoC2 rps2-rpoC2 15663 15783 0 121 LSC 0.139669 35 0 15 0 no 1.000000 5 1.000000 0.139669 1.000000 72.500000 rpoC2 gene rpoC2 rpoC2 15784 20046 -1 4263 LSC 0.128048 1103 15 7 15 no 1.000000 5 1.000000 0.127623 0.998358 74.600000 IGS_019 igs rpoC2|rpoC1 rpoC2-rpoC1 20047 20189 0 143 LSC 0.208029 52 15 4 6 no 1.000000 5 1.000000 0.215813 0.923077 76.300000 rpoC1 gene rpoC1 rpoC1 20190 23008 -1 2819 LSC 0.100958 579 119 0 1 no 1.000000 5 1.000000 0.098597 0.986520 80.700000 IGS_020 igs rpoC1|rpoB rpoC1-rpoB 23009 23053 0 45 LSC 0.211111 19 5 37 1 no 1.000000 5 1.000000 0.213889 1.000000 78.100000 rpoB gene rpoB rpoB 23054 26269 -1 3216 LSC 0.087718 581 0 2 1 no 1.000000 5 1.000000 0.087718 0.999689 75.400000 IGS_021 igs rpoB|trnD rpoB-trnD 26270 27213 0 944 LSC 0.314011 513 255 9 3 yes 1.000000 5 1.000000 0.305846 0.932203 81.100000 trnD tRNA trnD trnD 27214 27287 1 74 LSC 0.013514 2 0 0 5 no 0.200000 3 0.333333 0.013514 1.000000 32.000000 IGS_022 igs trnD|trnY trnD-trnY 27288 27401 0 114 LSC 0.394444 80 11 26 16 no 1.000000 5 1.000000 0.392700 0.991228 79.200000 trnY tRNA trnY trnY 27402 27483 -1 82 LSC 0.021951 3 0 1 0 no 0.600000 4 0.750000 0.021951 1.000000 44.500000 IGS_023 igs trnY|trnE trnY-trnE 27484 27644 0 161 LSC 0.266453 80 10 15 76 no 1.000000 5 1.000000 0.265321 0.968944 78.400000 trnE tRNA trnE trnE 27645 27717 -1 73 LSC 0.000000 0 0 2 3 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_024 igs trnE|psbM trnE-psbM 27718 28135 0 418 LSC 0.207257 165 51 75 17 no 1.000000 5 1.000000 0.206478 0.992823 81.500000 psbM gene psbM psbM 28136 28243 1 108 LSC 0.075000 16 0 3 0 no 1.000000 5 1.000000 0.075000 1.000000 72.500000 IGS_025 igs psbM|petN psbM-petN 28244 29156 0 913 LSC 0.282156 456 302 12 22 yes 1.000000 5 1.000000 0.282930 0.927711 81.600000 petN gene petN petN 29157 29249 -1 93 LSC 0.081720 14 0 1 2 no 1.000000 5 1.000000 0.081720 1.000000 72.600000 IGS_026 igs petN|trnC petN-trnC 29250 29693 0 444 LSC 0.202252 175 19 1 6 no 1.000000 5 1.000000 0.202074 0.988739 80.400000 trnC tRNA trnC trnC 29694 29765 -1 72 LSC 0.047222 7 0 1 0 no 1.000000 5 1.000000 0.047222 1.000000 70.900000 IGS_027 igs trnC|trnG trnC-trnG 29766 30075 0 310 LSC 0.304057 171 72 8 41 no 1.000000 5 1.000000 0.302739 0.977419 77.400000 IGS_028 igs trnG|psbZ trnG-psbZ 30147 30406 0 260 LSC 0.237286 114 16 24 0 no 1.000000 5 1.000000 0.237162 0.957692 77.100000 psbZ gene psbZ psbZ 30407 30595 -1 189 LSC 0.082011 32 0 0 1 no 1.000000 5 1.000000 0.082011 1.000000 72.500000 IGS_029 igs psbZ|trnS psbZ-trnS 30596 30978 0 383 LSC 0.185379 134 43 7 15 no 1.000000 5 1.000000 0.186737 0.973890 79.500000 trnS tRNA trnS trnS 30979 31067 1 89 LSC 0.029963 5 4 8 8 no 0.600000 4 0.750000 0.027495 1.000000 56.400000 IGS_030 igs trnS|psbC trnS-psbC 31068 31364 0 297 LSC 0.233910 130 47 34 18 no 1.000000 5 1.000000 0.236952 0.949495 77.300000 psbC gene psbC psbC 31365 32750 -1 1386 LSC 0.061472 176 0 3 46 no 1.000000 5 1.000000 0.061472 1.000000 79.000000 psbD gene psbD psbD 32734 33795 -1 1062 LSC 0.059322 132 0 2 3 no 1.000000 5 1.000000 0.059322 1.000000 78.900000 IGS_032 igs psbD|trnT psbD-trnT 33796 34944 0 1149 LSC 0.234507 492 190 35 5 yes 1.000000 5 1.000000 0.227286 0.967798 83.200000 IGS_033 igs trnT|trnfM trnT-trnfM 35017 35200 0 184 LSC 0.320109 106 38 4 31 no 1.000000 5 1.000000 0.311321 0.994565 77.700000 trnfM tRNA trnfM trnfM 35201 35274 -1 74 LSC 0.010811 2 0 3 0 no 0.400000 3 0.666667 0.010811 1.000000 34.500000 IGS_034 igs trnfM|rps14 trnfM-rps14 35275 35483 0 209 LSC 0.248485 96 67 39 9 no 1.000000 5 1.000000 0.248203 0.990431 76.900000 rps14 gene rps14 rps14 35484 35786 -1 303 LSC 0.091419 57 0 1 3 no 1.000000 5 1.000000 0.091419 1.000000 72.600000 IGS_035 igs rps14|psaB rps14-psaB 35787 35919 0 133 LSC 0.199744 53 6 5 0 no 1.000000 5 1.000000 0.197859 0.977444 77.200000 psaB gene psaB psaB 35920 38124 -1 2205 LSC 0.070068 325 0 1 5 no 1.000000 5 1.000000 0.070068 0.999546 77.400000 IGS_036 igs psaB|psaA psaB-psaA 38125 38149 0 25 LSC 0.024000 1 0 1 78 no 0.000000 2 0.000000 0.024000 1.000000 34.600000 psaA gene psaA psaA 38150 40402 -1 2253 LSC 0.067643 313 0 19 54 no 1.000000 5 1.000000 0.067643 1.000000 78.600000 IGS_037 igs psaA|ycf3 psaA-ycf3 40403 40702 0 300 LSC 0.155518 93 20 53 3 no 1.000000 5 1.000000 0.151951 0.980000 78.100000 ycf3 gene ycf3 ycf3 40703 42608 -1 1906 LSC 0.114423 435 65 7 3 no 1.000000 5 1.000000 0.112334 0.993704 82.000000 IGS_038 igs ycf3|trnS ycf3-trnS 42609 42896 0 288 LSC 0.184570 103 30 11 3 no 1.000000 5 1.000000 0.183366 0.979167 77.700000 trnS tRNA trnS trnS 42897 42983 1 87 LSC 0.048276 10 0 0 4 no 1.000000 5 1.000000 0.048276 1.000000 71.700000 IGS_039 igs trnS|rps4 trnS-rps4 42984 43445 0 462 LSC 0.250073 217 98 0 0 no 1.000000 5 1.000000 0.249653 0.976190 80.000000 rps4 gene rps4 rps4 43446 44039 -1 594 LSC 0.104082 127 6 1 1 no 1.000000 5 1.000000 0.104082 0.989899 79.600000 IGS_040 igs rps4|trnL rps4-trnL 44040 44774 0 735 LSC 0.218407 309 53 11 38 yes 1.000000 5 1.000000 0.219606 0.975510 84.600000 trnL_part1 tRNA trnL trnL 44775 44808 1 34 LSC 0.000000 0 0 2 4 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 trnL_part2 tRNA trnL trnL 45389 45435 1 47 LSC 0.042553 4 0 1 0 no 0.400000 3 0.666667 0.042553 1.000000 56.000000 IGS_043 igs trnL|trnF trnL-trnF 45436 45735 0 300 LSC 0.240111 139 33 16 6 no 1.000000 5 1.000000 0.230801 0.960000 77.300000 trnF tRNA trnF trnF 45736 45808 1 73 LSC 0.030137 4 0 6 4 no 1.000000 5 1.000000 0.030137 1.000000 58.200000 IGS_044 igs trnF|ndhJ trnF-ndhJ 45809 46013 0 205 LSC 0.262764 95 160 5 24 no 1.000000 5 1.000000 0.264545 0.951220 72.600000 ndhJ gene ndhJ ndhJ 46014 46496 -1 483 LSC 0.071843 76 0 2 9 no 1.000000 5 1.000000 0.071843 1.000000 76.500000 IGS_045 igs ndhJ|ndhK ndhJ-ndhK 46497 46583 0 87 LSC 0.209195 37 5 1 1 no 1.000000 5 1.000000 0.212658 0.988506 78.300000 ndhK gene ndhK ndhK 46584 47255 -1 672 LSC 0.109127 146 6 1 3 no 1.000000 5 1.000000 0.108429 1.000000 79.800000 IGS_046 igs ndhK|ndhC ndhK-ndhC 47256 47326 0 71 LSC 0.215493 30 0 0 2 no 1.000000 5 1.000000 0.215493 1.000000 72.500000 ndhC gene ndhC ndhC 47327 47689 -1 363 LSC 0.095592 67 0 7 1 no 1.000000 5 1.000000 0.095592 0.997245 73.900000 IGS_047 igs ndhC|trnV ndhC-trnV 47690 48137 0 448 LSC 0.251843 199 123 6 16 no 1.000000 5 1.000000 0.244189 0.939732 78.500000 trnV_part2 tRNA trnV trnV 48138 48177 -1 40 LSC 0.030000 3 0 1 7 no 0.600000 4 0.750000 0.030000 1.000000 52.900000 trnV_part1 tRNA trnV trnV 48808 48841 -1 34 LSC 0.041176 3 1 3 3 no 0.600000 4 0.750000 0.041800 1.000000 63.300000 IGS_050 igs trnV|trnM trnV-trnM 48842 49114 0 273 LSC 0.277778 137 47 7 8 no 1.000000 5 1.000000 0.275213 0.978022 77.600000 trnM tRNA trnM trnM 49115 49187 1 73 LSC 0.032877 5 0 0 1 no 1.000000 5 1.000000 0.032877 1.000000 60.900000 IGS_051 igs trnM|atpE trnM-atpE 49188 49378 0 191 LSC 0.183838 59 54 16 4 no 1.000000 5 1.000000 0.182311 0.858639 72.700000 atpE gene atpE atpE 49379 49777 -1 399 LSC 0.066667 55 0 1 1 no 1.000000 5 1.000000 0.066667 1.000000 74.600000 IGS_052 igs atpE|atpB atpE-atpB 49778 49782 0 5 LSC 0.200000 2 0 3 1 no 0.200000 3 0.333333 NA 1.000000 57.600000 atpB gene atpB atpB 49783 51264 -1 1482 LSC 0.055533 168 0 0 8 no 1.000000 5 1.000000 0.055533 1.000000 78.800000 IGS_053 igs atpB|rbcL atpB-rbcL 51265 51893 0 629 LSC 0.164544 200 21 7 92 no 1.000000 5 1.000000 0.164580 0.990461 83.000000 rbcL gene rbcL rbcL 51894 53321 1 1428 LSC 0.058053 168 0 16 4 no 1.000000 5 1.000000 0.058053 0.998599 79.000000 IGS_054 igs rbcL|trnSeC rbcL-trnSeC 53322 53448 0 127 LSC 0.214876 48 23 5 8 no 1.000000 5 1.000000 0.219823 0.913386 75.500000 trnSeC tRNA trnSeC trnSeC 53449 53522 1 74 LSC 0.094595 14 0 0 0 no 1.000000 5 1.000000 0.094595 1.000000 72.500000 IGS_055 igs trnSeC|accD trnSeC-accD 53523 53835 0 313 LSC 0.195101 117 25 1 4 no 1.000000 5 1.000000 0.197610 0.993610 78.500000 accD gene accD accD 53836 54768 1 933 LSC 0.069561 135 0 8 0 no 1.000000 5 1.000000 0.069561 1.000000 78.800000 IGS_056 igs accD|psaI accD-psaI 54769 55026 0 258 LSC 0.211757 103 8 6 8 no 1.000000 5 1.000000 0.212346 0.996124 76.600000 psaI gene psaI psaI 55027 55137 1 111 LSC 0.078378 19 0 0 3 no 1.000000 5 1.000000 0.078378 1.000000 72.500000 IGS_057 igs psaI|ycf4 psaI-ycf4 55138 55539 0 402 LSC 0.202005 159 23 6 4 no 1.000000 5 1.000000 0.204615 0.980100 80.200000 ycf4 gene ycf4 ycf4 55540 56094 1 555 LSC 0.095495 110 4 0 4 no 1.000000 5 1.000000 0.095576 1.000000 78.600000 IGS_058 igs ycf4|cemA ycf4-cemA 56095 56427 0 333 LSC 0.212093 138 22 1 0 no 1.000000 5 1.000000 0.208970 0.981982 78.500000 cemA gene cemA cemA 56428 57822 1 1395 LSC 0.143605 405 30 2 3 no 1.000000 5 1.000000 0.144300 0.991398 81.200000 IGS_059 igs cemA|petA cemA-petA 57823 58031 0 209 LSC 0.201307 81 17 12 6 no 1.000000 5 1.000000 0.197234 0.956938 77.200000 petA gene petA petA 58032 58997 1 966 LSC 0.083540 166 0 2 0 no 1.000000 5 1.000000 0.083540 1.000000 78.800000 IGS_060 igs petA|psbJ petA-psbJ 58998 59740 0 743 LSC 0.246902 348 94 3 0 yes 1.000000 5 1.000000 0.243325 0.983849 83.700000 psbJ gene psbJ psbJ 59741 59863 -1 123 LSC 0.052033 15 0 0 0 no 1.000000 5 1.000000 0.052033 1.000000 72.500000 IGS_061 igs psbJ|psbL psbJ-psbL 59864 59983 0 120 LSC 0.083761 21 3 3 3 no 1.000000 5 1.000000 0.083761 0.975000 74.900000 psbL gene psbL psbL 59984 60100 -1 117 LSC 0.066667 16 0 2 1 no 1.000000 5 1.000000 0.066667 1.000000 72.600000 IGS_062 igs psbL|psbF psbL-psbF 60101 60121 0 21 LSC 0.066667 2 0 11 12 no 0.200000 3 0.333333 0.066667 1.000000 57.700000 psbF gene psbF psbF 60122 60241 -1 120 LSC 0.056667 13 0 13 17 no 1.000000 5 1.000000 0.056667 1.000000 73.500000 IGS_063 igs psbF|psbE psbF-psbE 60242 60250 0 9 LSC 0.000000 0 0 23 8 no 0.000000 1 0.000000 NA 1.000000 19.400000 psbE gene psbE psbE 60251 60502 -1 252 LSC 0.045238 24 0 32 18 no 1.000000 5 1.000000 0.045238 1.000000 71.100000 IGS_064 igs psbE|petL psbE-petL 60503 61242 0 740 LSC 0.198892 262 250 11 5 no 1.000000 5 1.000000 0.185440 0.941892 81.400000 petL gene petL petL 61243 61452 1 210 LSC 0.166032 71 24 7 2 no 1.000000 5 1.000000 0.162903 1.000000 78.200000 IGS_065 igs petL|petG petL-petG 61453 61505 0 53 LSC 0.101887 12 4 4 15 no 1.000000 5 1.000000 0.109588 0.924528 76.700000 petG gene petG petG 61506 61622 1 117 LSC 0.063248 16 0 14 0 no 1.000000 5 1.000000 0.063248 1.000000 72.500000 IGS_066 igs petG|trnW petG-trnW 61623 61863 0 241 LSC 0.275556 122 42 1 23 no 1.000000 5 1.000000 0.269734 0.933610 76.100000 trnW tRNA trnW trnW 61864 61937 -1 74 LSC 0.024324 3 0 0 0 no 1.000000 5 1.000000 0.024324 1.000000 53.500000 IGS_067 igs trnW|trnP trnW-trnP 61938 62123 0 186 LSC 0.301832 103 73 15 25 no 1.000000 5 1.000000 0.300650 0.956989 76.000000 trnP tRNA trnP trnP 62124 62197 -1 74 LSC 0.035135 5 0 3 0 no 0.600000 4 0.750000 0.035135 1.000000 54.300000 IGS_068 igs trnP|psaJ trnP-psaJ 62198 62529 0 332 LSC 0.251321 156 54 0 9 no 1.000000 5 1.000000 0.247291 0.984940 78.000000 psaJ gene psaJ psaJ 62530 62658 1 129 LSC 0.078295 22 0 0 3 no 1.000000 5 1.000000 0.078295 1.000000 72.500000 IGS_069 igs psaJ|rpl33 psaJ-rpl33 62659 62888 0 230 LSC 0.218261 92 15 3 7 no 1.000000 5 1.000000 0.209255 0.956522 77.500000 rpl33 gene rpl33 rpl33 62889 63089 1 201 LSC 0.135678 55 2 1 6 no 1.000000 5 1.000000 0.135678 0.990050 73.400000 IGS_070 igs rpl33|rps18 rpl33-rps18 63090 63170 0 81 LSC 0.181818 29 7 3 9 no 1.000000 5 1.000000 0.184609 0.925926 76.300000 rps18 gene rps18 rps18 63171 63398 1 228 LSC 0.084649 39 0 0 1 no 1.000000 5 1.000000 0.084649 1.000000 72.500000 IGS_071 igs rps18|rpl20 rps18-rpl20 63399 63659 0 261 LSC 0.266802 122 47 6 0 no 1.000000 5 1.000000 0.262254 0.931034 75.400000 rpl20 gene rpl20 rpl20 63660 64016 -1 357 LSC 0.121008 87 2 1 15 no 1.000000 5 1.000000 0.120142 1.000000 74.400000 IGS_072 igs rpl20|rps12 rpl20-rps12 64017 64967 0 951 LSC 0.153333 283 56 1 9 yes 1.000000 5 1.000000 0.150807 0.988433 84.300000 rps12_part1 gene rps12 rps12 64968 65081 -1 114 LSC 0.093860 23 0 11 1 no 1.000000 5 1.000000 0.093860 1.000000 72.600000 IGS_073 igs rps12|clpP rps12-clpP 65082 65308 0 227 LSC 0.223379 95 55 0 3 no 1.000000 5 1.000000 0.223183 0.955947 75.900000 clpP gene clpP clpP 65309 67295 -1 1987 LSC 0.145206 541 183 0 0 no 1.000000 5 1.000000 0.139521 0.964771 82.400000 IGS_074 igs clpP|psbB clpP-psbB 67296 67791 0 496 LSC 0.181694 174 37 23 20 no 1.000000 5 1.000000 0.179980 0.977823 83.100000 psbB gene psbB psbB 67792 69318 1 1527 LSC 0.072430 223 0 24 0 no 1.000000 5 1.000000 0.072430 0.999345 78.700000 IGS_075 igs psbB|psbT psbB-psbT 69319 69568 0 250 LSC 0.214113 103 14 0 24 no 1.000000 5 1.000000 0.209614 0.968000 77.500000 psbT gene psbT psbT 69569 69673 1 105 LSC 0.083810 18 0 2 1 no 1.000000 5 1.000000 0.083810 1.000000 72.600000 IGS_076 igs psbT|psbN psbT-psbN 69674 69804 0 131 LSC 0.295385 68 14 0 0 no 1.000000 5 1.000000 0.284353 0.977099 77.300000 psbN gene psbN psbN 69805 69942 -1 138 LSC 0.076812 22 0 1 0 no 1.000000 5 1.000000 0.076812 1.000000 72.500000 IGS_077 igs psbN|psbH psbN-psbH 69943 70020 0 78 LSC 0.073077 12 0 5 15 no 1.000000 5 1.000000 0.073077 1.000000 72.900000 psbH gene psbH psbH 70021 70245 1 225 LSC 0.062222 28 0 1 0 no 1.000000 5 1.000000 0.062222 1.000000 72.500000 IGS_078 igs psbH|petB psbH-petB 70246 70467 0 222 LSC 0.192390 75 23 0 17 no 1.000000 5 1.000000 0.190256 0.981982 77.500000 petB gene petB petB 70468 71820 1 1353 LSC 0.144888 374 61 0 1 yes 1.000000 5 1.000000 0.140508 0.996305 84.000000 IGS_079 igs petB|petD petB-petD 71821 72027 0 207 LSC 0.205155 67 84 2 19 no 1.000000 5 1.000000 0.183324 0.903382 73.400000 petD gene petD petD 72028 73148 1 1121 LSC 0.113500 251 26 5 0 no 1.000000 5 1.000000 0.111632 0.996432 81.400000 IGS_080 igs petD|rpoA petD-rpoA 73149 73493 0 345 LSC 0.225325 141 48 21 0 no 1.000000 5 1.000000 0.223081 0.939130 77.100000 rpoA gene rpoA rpoA 73494 74531 -1 1038 LSC 0.128356 263 16 0 2 no 1.000000 5 1.000000 0.127595 0.998073 80.500000 IGS_081 igs rpoA|rps11 rpoA-rps11 74532 74573 0 42 LSC 0.234921 19 3 3 3 no 1.000000 5 1.000000 0.230839 0.976190 78.200000 rps11 gene rps11 rps11 74574 74966 -1 393 LSC 0.084733 68 0 0 4 no 1.000000 5 1.000000 0.084733 1.000000 74.400000 IGS_082 igs rps11|rpl36 rps11-rpl36 74967 75033 0 67 LSC 0.160199 20 3 7 1 no 1.000000 5 1.000000 0.158092 1.000000 77.900000 rpl36 gene rpl36 rpl36 75034 75147 -1 114 LSC 0.085965 21 0 0 5 no 1.000000 5 1.000000 0.085965 1.000000 72.500000 IGS_083 igs rpl36|infA rpl36-infA 75148 75280 0 133 LSC 0.233073 58 19 8 3 no 1.000000 5 1.000000 0.227191 0.954887 76.500000 infA gene infA infA 75281 75523 -1 243 LSC 0.058848 30 0 2 4 no 1.000000 5 1.000000 0.058848 1.000000 72.600000 IGS_084 igs infA|rps8 infA-rps8 75524 75638 0 115 LSC 0.262798 55 27 5 12 no 1.000000 5 1.000000 0.266195 0.965217 76.500000 rps8 gene rps8 rps8 75639 76037 -1 399 LSC 0.134586 109 0 2 0 no 1.000000 5 1.000000 0.134586 0.997494 74.500000 IGS_085 igs rps8|rpl14 rps8-rpl14 76038 76366 0 329 LSC 0.263437 132 202 1 1 no 1.000000 5 1.000000 0.246002 0.948328 72.500000 rpl14 gene rpl14 rpl14 76367 76735 -1 369 LSC 0.095122 72 0 0 0 no 1.000000 5 1.000000 0.095122 1.000000 73.900000 IGS_086 igs rpl14|rpl16 rpl14-rpl16 76736 77180 0 445 LSC 0.345929 259 141 35 5 yes 1.000000 5 1.000000 0.341092 0.896629 76.600000 rpl16 gene rpl16 rpl16 77181 78274 -1 1094 LSC 0.146363 307 71 1 1 yes 1.000000 5 1.000000 0.143026 0.977148 83.900000 IGS_087 igs rpl16|rps3 rpl16-rps3 78275 78506 0 232 LSC 0.202464 88 29 0 0 no 1.000000 5 1.000000 0.201055 0.991379 77.600000 rps3 gene rps3 rps3 78507 79160 -1 654 LSC 0.095413 129 0 0 4 no 1.000000 5 1.000000 0.095413 0.998471 78.700000 IGS_088 igs rps3|rpl22 rps3-rpl22 79161 79253 0 93 LSC 0.221864 40 6 8 1 no 1.000000 5 1.000000 0.216129 1.000000 78.400000 rpl22 gene rpl22 rpl22 79254 79622 -1 369 LSC 0.129539 99 0 1 5 no 1.000000 5 1.000000 0.129539 1.000000 74.000000 IGS_089 igs rpl22|rps19 rpl22-rps19 79623 79652 0 30 LSC 0.115385 5 13 3 21 no 0.600000 4 0.750000 0.128205 0.866667 63.600000 rps19 gene rps19 rps19 79653 79931 -1 279 LSC 0.095341 52 0 6 18 no 1.000000 5 1.000000 0.095341 0.996416 72.900000 IGS_090 igs rps19|rpl2 rps19-rpl2 79932 79965 0 34 LSC 0.090196 6 5 1 4 no 0.600000 4 0.750000 0.088945 1.000000 70.400000 rpl2 gene rpl2 rpl2 79966 81530 -1 1565 LSC 0.182212 544 111 0 7 yes 1.000000 5 1.000000 0.178805 0.990415 84.200000 IGS_091 igs rpl2|rpl23 rpl2-rpl23 81531 81625 0 95 LSC 0.374157 57 25 3 0 no 1.000000 5 1.000000 0.357823 0.936842 74.900000 rpl23 gene rpl23 rpl23 81626 81907 -1 282 LSC 0.189716 102 0 0 1 yes 1.000000 5 1.000000 0.189716 0.996454 72.500000 IGS_092 igs rpl23|trnI rpl23-trnI 81908 82160 0 253 LSC 0.355733 156 79 1 51 no 1.000000 5 1.000000 0.357553 0.976285 76.100000 IGS_093 igs trnI|trnT trnI-trnT 82235 83675 0 1441 IRb 0.068900 167 1396 22 8 no 1.000000 5 1.000000 0.136757 0.978487 79.100000 trnT_part1 tRNA trnT trnT 83676 83709 1 34 IRb 0.029412 2 34 21 6 no 0.600000 4 0.750000 0.029412 1.000000 51.000000 trnT_part2 tRNA trnT trnT 84218 84260 1 43 IRb 0.099225 8 8 2 6 no 1.000000 5 1.000000 0.092962 1.000000 77.200000 IGS_096 igs trnT|trnR trnT-trnR 84261 85172 0 912 IRb 0.124853 232 173 6 75 yes 1.000000 5 1.000000 0.123753 0.984649 83.800000 trnR tRNA trnR trnR 85173 85246 -1 74 IRb 0.000000 0 0 3 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_097 igs trnR|rrn5 trnR-rrn5 85247 85501 0 255 IRb 0.138562 71 8 77 2 no 1.000000 5 1.000000 0.133466 1.000000 76.400000 rrn5 rRNA rrn5 rrn5 85502 85624 -1 123 IRb 0.014634 4 0 0 6 no 0.600000 4 0.750000 0.014634 1.000000 40.700000 IGS_098 igs rrn5|rrn4.5 rrn5-rrn4.5 85625 85916 0 292 IRb 0.076736 46 4 5 51 no 1.000000 5 1.000000 0.076736 0.986301 74.100000 rrn4.5 rRNA rrn4.5 rrn4.5 85917 86019 -1 103 IRb 0.022330 4 0 7 9 no 0.600000 4 0.750000 0.022330 1.000000 45.400000 IGS_099 igs rrn4.5|rrn23 rrn4.5-rrn23 86020 86120 0 101 IRb 0.043750 9 6 26 0 no 1.000000 5 1.000000 0.044178 0.940594 72.400000 rrn23 rRNA rrn23 rrn23 86121 88931 -1 2811 IRb 0.009783 56 1 10 4 no 1.000000 5 1.000000 0.009784 1.000000 48.300000 IGS_100 igs rrn23|trnA rrn23-trnA 88932 89111 0 180 IRb 0.066852 27 14 10 54 no 1.000000 5 1.000000 0.063968 0.972222 78.100000 trnA_part2 tRNA trnA trnA 89112 89147 -1 36 IRb 0.000000 0 0 19 18 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 trnA_part1 tRNA trnA trnA 89952 89988 -1 37 IRb 0.000000 0 0 26 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_103 igs trnA|trnI trnA-trnI 89989 90055 0 67 IRb 0.049254 6 0 63 42 no 0.600000 4 0.750000 0.049254 1.000000 66.500000 trnI_part2 tRNA trnI trnI 90056 90091 -1 36 IRb 0.000000 0 0 4 6 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 trnI_part1 tRNA trnI trnI 91088 91123 -1 36 IRb 0.000000 0 0 12 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_106 igs trnI|rrn16 trnI-rrn16 91124 91405 0 282 IRb 0.115523 67 20 48 83 no 1.000000 5 1.000000 0.114884 0.982270 81.300000 rrn16 rRNA rrn16 rrn16 91406 92905 -1 1500 IRb 0.013200 42 0 0 9 no 1.000000 5 1.000000 0.013200 1.000000 53.200000 IGS_107 igs rrn16|rps7 rrn16-rps7 92906 95425 0 2520 IRb 0.075818 370 405 65 4 no 1.000000 5 1.000000 0.070608 0.984921 80.900000 rps7 gene rps7 rps7 95426 95869 1 444 IRb 0.020721 20 0 7 2 no 1.000000 5 1.000000 0.020721 1.000000 55.600000 IGS_108 igs rps7|psbA rps7-psbA 95870 96367 0 498 IRb 0.084979 91 38 3 71 no 1.000000 5 1.000000 0.085338 0.965863 81.600000 psbA gene psbA psbA 96368 97429 1 1062 IRb 0.024859 57 0 2 0 no 1.000000 5 1.000000 0.024859 1.000000 61.600000 IGS_109 igs psbA|trnH psbA-trnH 97430 97858 0 429 IRb 0.094484 82 17 8 78 no 1.000000 5 1.000000 0.093889 0.986014 80.100000 trnH tRNA trnH trnH 97859 97932 1 74 IRb 0.000000 0 0 6 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_110 igs trnH|ycf2 trnH-ycf2 97933 98197 0 265 IRb 0.109057 58 6 80 3 no 1.000000 5 1.000000 0.107832 1.000000 75.400000 ycf2 gene ycf2 ycf2 98198 104512 1 6315 IRb 0.064782 871 57 2 15 no 1.000000 5 1.000000 0.064644 0.999050 73.700000 IGS_111 igs ycf2|trnN ycf2-trnN 104513 105170 0 658 IRb 0.154480 175 334 7 67 no 1.000000 5 1.000000 0.129729 0.934650 80.100000 trnN tRNA trnN trnN 105171 105232 -1 62 IRb 0.000000 0 0 2 5 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_112 igs trnN|ndhF trnN-ndhF 105233 105717 0 485 IRb 0.091890 91 39 64 3 no 1.000000 5 1.000000 0.092592 1.000000 82.300000 ndhF gene ndhF ndhF 105718 107907 -1 2190 SSC 0.182731 768 43 22 3 yes 1.000000 5 1.000000 0.181875 0.992694 79.700000 IGS_113 igs ndhF|rpl21 ndhF-rpl21 107908 108214 0 307 SSC 0.287364 155 22 8 0 no 1.000000 5 1.000000 0.273888 0.957655 77.400000 rpl21 gene rpl21 rpl21 108215 108571 1 357 SSC 0.159664 116 0 1 1 no 1.000000 5 1.000000 0.159664 1.000000 73.800000 IGS_114 igs rpl21|rpl32 rpl21-rpl32 108572 108761 0 190 SSC 0.263845 92 19 3 8 no 1.000000 5 1.000000 0.261152 0.984211 78.100000 rpl32 gene rpl32 rpl32 108762 108938 1 177 SSC 0.161017 54 0 1 0 no 1.000000 5 1.000000 0.161017 1.000000 72.500000 IGS_115 igs rpl32|trnP rpl32-trnP 108939 109599 0 661 SSC 0.324747 380 114 1 8 yes 1.000000 5 1.000000 0.319797 0.942511 82.500000 trnP tRNA trnP trnP 109600 109673 -1 74 SSC 0.018919 3 0 1 1 no 0.600000 4 0.750000 0.018919 1.000000 43.700000 IGS_116 igs trnP|trnL trnP-trnL 109674 109897 0 224 SSC 0.342152 136 41 11 49 no 1.000000 5 1.000000 0.328597 0.946429 77.000000 IGS_117 igs trnL|ccsA trnL-ccsA 109978 110128 0 151 SSC 0.332671 87 24 30 4 no 1.000000 5 1.000000 0.323273 0.887417 75.500000 ccsA gene ccsA ccsA 110129 111079 1 951 SSC 0.164353 313 6 4 3 no 1.000000 5 1.000000 0.164354 0.997897 79.700000 IGS_118 igs ccsA|ndhD ccsA-ndhD 111080 111495 0 416 SSC 0.287945 217 71 0 0 no 1.000000 5 1.000000 0.279888 0.980769 79.300000 ndhD gene ndhD ndhD 111496 112986 -1 1491 SSC 0.129309 384 0 0 5 no 1.000000 5 1.000000 0.129309 0.999329 78.700000 IGS_119 igs ndhD|psaC ndhD-psaC 112987 113124 0 138 SSC 0.201208 55 2 18 0 no 1.000000 5 1.000000 0.199432 1.000000 74.200000 psaC gene psaC psaC 113125 113370 -1 246 SSC 0.060569 29 0 0 3 no 1.000000 5 1.000000 0.060569 1.000000 72.500000 IGS_120 igs psaC|ndhE psaC-ndhE 113371 113707 0 337 SSC 0.275224 172 49 14 18 no 1.000000 5 1.000000 0.275517 0.973294 78.800000 ndhE gene ndhE ndhE 113708 114010 -1 303 SSC 0.105611 64 4 5 0 no 1.000000 5 1.000000 0.106167 1.000000 74.100000 IGS_121 igs ndhE|ndhG ndhE-ndhG 114011 114112 0 102 SSC 0.254575 48 17 4 1 no 1.000000 5 1.000000 0.250289 1.000000 77.100000 ndhG gene ndhG ndhG 114113 114706 -1 594 SSC 0.155051 186 3 0 2 no 1.000000 5 1.000000 0.154346 0.998316 79.200000 IGS_122 igs ndhG|ndhI ndhG-ndhI 114707 114891 0 185 SSC 0.335495 100 39 6 0 no 1.000000 5 1.000000 0.296448 0.864865 74.100000 ndhI gene ndhI ndhI 114892 115395 -1 504 SSC 0.105302 106 10 0 0 no 1.000000 5 1.000000 0.101937 0.984127 78.700000 IGS_123 igs ndhI|ndhA ndhI-ndhA 115396 115528 0 133 SSC 0.256140 61 8 4 4 no 1.000000 5 1.000000 0.246629 1.000000 78.500000 ndhA gene ndhA ndhA 115529 117497 -1 1969 SSC 0.160848 607 76 0 1 no 1.000000 5 1.000000 0.158724 0.991874 82.200000 IGS_124 igs ndhA|ndhH ndhA-ndhH 117498 117498 0 1 SSC 0.000000 0 0 4 0 no 0.000000 1 0.000000 NA 1.000000 18.800000 ndhH gene ndhH ndhH 117499 118720 -1 1222 SSC 0.090344 218 6 5 2 no 1.000000 5 1.000000 0.089710 1.000000 79.500000 IGS_125 igs ndhH|rps15 ndhH-rps15 118721 118805 0 85 SSC 0.288235 51 3 0 0 no 1.000000 5 1.000000 0.290488 1.000000 76.700000 rps15 gene rps15 rps15 118806 119081 -1 276 SSC 0.147101 79 6 0 0 no 1.000000 5 1.000000 0.143470 0.974638 74.500000 IGS_126 igs rps15|ycf1 rps15-ycf1 119082 119371 0 290 SSC 0.262690 137 32 1 1 no 1.000000 5 1.000000 0.264808 0.982759 77.500000 ycf1 gene ycf1 ycf1 119372 124462 -1 5091 SSC 0.192241 1894 66 0 0 no 1.000000 5 1.000000 0.191885 0.996268 74.000000 IGS_127 igs ycf1|chlN ycf1-chlN 124463 124804 0 342 SSC 0.309454 188 47 2 4 no 1.000000 5 1.000000 0.311284 0.959064 77.900000 chlN gene chlN chlN 124805 126187 -1 1383 SSC 0.129619 348 11 0 1 no 1.000000 5 1.000000 0.129142 0.995662 79.600000 IGS_128 igs chlN|chlL chlN-chlL 126188 126265 0 78 SSC 0.216667 34 0 7 1 no 1.000000 5 1.000000 0.216667 1.000000 72.600000 chlL gene chlL chlL 126266 127148 -1 883 SSC 0.116459 207 9 0 7 no 1.000000 5 1.000000 0.115438 0.998867 79.900000 IGS_129 igs chlL|trnN chlL-trnN 127149 127618 0 470 IRa 0.096667 92 38 18 64 no 1.000000 5 1.000000 0.096453 1.000000 83.100000 trnN tRNA trnN trnN 127619 127681 1 63 IRa 0.000000 0 0 5 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_130 igs trnN|ycf2 trnN-ycf2 127682 128338 0 657 IRa 0.147363 170 343 68 7 no 1.000000 5 1.000000 0.123591 0.939117 80.100000 ycf2 gene ycf2 ycf2 128339 134653 -1 6315 IRa 0.064656 869 57 15 2 no 1.000000 5 1.000000 0.064453 0.999050 73.700000 IGS_131 igs ycf2|trnH ycf2-trnH 134654 134918 0 265 IRa 0.109811 58 6 3 80 no 1.000000 5 1.000000 0.108589 1.000000 75.400000 trnH tRNA trnH trnH 134919 134992 -1 74 IRa 0.000000 0 0 4 6 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_132 igs trnH|psbA trnH-psbA 134993 135421 0 429 IRa 0.095902 84 17 78 8 no 1.000000 5 1.000000 0.095322 0.986014 80.100000 psbA gene psbA psbA 135422 136483 -1 1062 IRa 0.024859 57 0 0 2 no 1.000000 5 1.000000 0.024859 1.000000 61.600000 IGS_133 igs psbA|rps7 psbA-rps7 136484 136981 0 498 IRa 0.084979 91 38 71 3 no 1.000000 5 1.000000 0.085338 0.965863 81.600000 rps7 gene rps7 rps7 136982 137425 -1 444 IRa 0.020721 20 0 2 7 no 1.000000 5 1.000000 0.020721 1.000000 55.600000 IGS_134 igs rps7|rps12 rps7-rps12 137426 138048 0 623 IRa 0.055056 70 23 4 9 yes 1.000000 5 1.000000 0.053750 0.998395 83.400000 rps12_part2 gene rps12 rps12 138049 138345 -1 297 IRa 0.024242 16 0 24 14 no 1.000000 5 1.000000 0.024242 1.000000 56.200000 IGS_135 igs rps12|rrn16 rps12-rrn16 138346 139945 0 1600 IRa 0.093468 283 382 0 65 no 1.000000 5 1.000000 0.086321 0.976875 81.400000 rrn16 rRNA rrn16 rrn16 139946 141445 1 1500 IRa 0.013200 42 0 9 0 no 1.000000 5 1.000000 0.013200 1.000000 53.200000 IGS_136 igs rrn16|trnI rrn16-trnI 141446 141727 0 282 IRa 0.113718 66 21 83 48 no 1.000000 5 1.000000 0.114574 0.982270 81.200000 trnI_part1 tRNA trnI trnI 141728 141763 1 36 IRa 0.000000 0 0 4 12 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 trnI_part2 tRNA trnI trnI 142760 142795 1 36 IRa 0.000000 0 0 6 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_139 igs trnI|trnA trnI-trnA 142796 142862 0 67 IRa 0.049254 6 0 42 63 no 0.600000 4 0.750000 0.049254 1.000000 66.500000 trnA_part1 tRNA trnA trnA 142863 142899 1 37 IRa 0.000000 0 0 0 26 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 trnA_part2 tRNA trnA trnA 143704 143739 1 36 IRa 0.000000 0 0 18 19 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_142 igs trnA|rrn23 trnA-rrn23 143740 143919 0 180 IRa 0.062222 26 13 54 10 no 1.000000 5 1.000000 0.063134 0.961111 78.100000 rrn23 rRNA rrn23 rrn23 143920 146730 1 2811 IRa 0.009783 56 1 4 10 no 1.000000 5 1.000000 0.009784 1.000000 48.300000 IGS_143 igs rrn23|rrn4.5 rrn23-rrn4.5 146731 146831 0 101 IRa 0.043750 9 6 0 26 no 1.000000 5 1.000000 0.044178 0.940594 72.400000 rrn4.5 rRNA rrn4.5 rrn4.5 146832 146934 1 103 IRa 0.022330 4 0 9 7 no 0.600000 4 0.750000 0.022330 1.000000 45.400000 IGS_144 igs rrn4.5|rrn5 rrn4.5-rrn5 146935 147226 0 292 IRa 0.076736 46 4 51 5 no 1.000000 5 1.000000 0.076736 0.986301 74.100000 rrn5 rRNA rrn5 rrn5 147227 147349 1 123 IRa 0.014634 4 0 6 0 no 0.600000 4 0.750000 0.014634 1.000000 40.700000 IGS_145 igs rrn5|trnR rrn5-trnR 147350 147604 0 255 IRa 0.149673 75 8 2 77 no 1.000000 5 1.000000 0.143370 1.000000 76.400000 trnR tRNA trnR trnR 147605 147678 1 74 IRa 0.000000 0 0 1 3 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_146 igs trnR|trnT trnR-trnT 147679 148590 0 912 IRa 0.124596 232 175 75 6 yes 1.000000 5 1.000000 0.123589 0.986842 83.800000 trnT_part2 tRNA trnT trnT 148591 148633 -1 43 IRa 0.095349 8 12 6 2 no 1.000000 5 1.000000 0.096632 1.000000 77.200000 trnT_part1 tRNA trnT trnT 149142 149175 -1 34 IRa 0.094118 8 18 6 21 no 0.600000 4 0.750000 0.029412 1.000000 68.400000 IGS_149 igs trnT|ndhB trnT-ndhB 149176 149409 0 234 IRa 0.171884 78 154 6 20 no 1.000000 5 1.000000 0.266625 0.970085 73.200000 ndhB_part2 gene ndhB ndhB 149410 150180 -1 771 IRa 0.077389 135 539 8 14 no 1.000000 5 1.000000 0.189123 1.000000 81.200000 IGS_150 igs ndhB|ndhB ndhB-ndhB 150181 439 0 827 LSC 0.191310 277 381 20 11 no 1.000000 5 1.000000 0.216441 0.928658 80.400000